FvH4_4g27550

Ubiquitin receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0005958
Physical Location & Seq
Forward (+)
28504412 .. 28508781
4370 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g27550.t2

Sequence Viewer

Length: 1203 bp
ATGAAGATCTTCGTGAAGACTCTCAAGGGGACTCACTTCGAAATCCAAGTCCAGCCTCAGGACTCGGTTGTTGATGTGAAGAAGTCAATAGAAACTTCTCAAGGTTTGACTGTGTATCCCGCTGCACAACAGATGCTAATCCATCAAGGGAAAGTACTTAAGGATGACACAACATTGGAAGAAAACAAAGTTTCGGAGAATAGCTTTGTTGTGATAATGTTGACGAAGAGTAAGAGCTCATCTAGTGAGGGTTCAAGTGCGTCAACTGCGGCTACGACTAAGGCCCCACAGCCCAGTACACCTTCACCTGCTCCAACTGTGACATCCACGACACCTCAGGCTCCTGTCTTAACGCCGGCATCAGTTACCACACCAGTTTCTGGCCCTTCGGCAGCAACAGAGCCGGCATCAGTTACCACGCCAGTTTCTGTCCCTTCGGCGGCAACAGATTTGGACTATGGCCAAGCAGCATCTGATCTGGTAGCTGGAAACAATTTGGAGGGAACAATTCAGCACATTCTGGACATGGGTGGAGGAACCTGGGACAGAGATACTGTTGTACGTGCTCTTCGTGCTGCGTTCAACAACCCAGCTAGAGCAATTGATTACTTGTATTCAGGTATCCCTGAGCAACCTGAAGCTCCAGCTGCAGCTCCTACTCGTGTGAGTGGTGAAGCTGCAAACGTTTCAGCTCCCCAATCAGCACAACCAGCATCTGTTCCTTCAACAGGACCTAATGCCAACCCTTTAGACCTCTTCCCACAGGGTCTTCCGAACCTGGGTGCTGCTGCCGGCGCTGGTGCCGGCACAGGTGTAGGTGATCTTGATTTTCTGCGTGACAGCCCACAGTTCCAAGCATTGCGAGCTATGGTGCAGGCTAATCCACATATACTGCAGCCTATGCTTCAAGAGTTGGGAAAACAAAATCCTCAGCTTGTAAGGTTAATTCAACAACATCAAGCTGACTTCCTTCGCCTGATTAATGAACCTGTAGAAGGTGGAGAAGGGGATGTGTTGGGACAACTGGATGCAGCAATGCCACAAGCAATAACTGTCACTCCCGAGGAGCGTGAAGCCATAGAACGTCTTGAAGCGATGGGCTTTGATAGAGCACTTGTATTGGAGGTGTTCGTTGCATGCAACAGGAACGAAGAATTGGCTGCAAACTACCTCTTAGATCACATGCACGAGTTTGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03420 ko04141 map03420 map04141
Pfam Domains
Protein Families
UBA XPC-binding ubiquitin

Protein Analysis

401

Amino Acids

42.14

Weight (kDa)

4.65

Isoelectric Point (pI)

51.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 73 2.9e-06 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 76 1.2e-16 Ubiquitin family
UBA PF00627 170 - 205 8.7e-09 UBA/TS-N domain
XPC-binding PF09280 276 - 331 3.6e-24 XPC-binding domain
UBA PF00627 357 - 392 8.3e-10 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 316
Acc36I ACCTGC 1 cut(s) 316
AccB1I GGYRCC 1 cut(s) 800
AccB7I CCANNNNNTGG 1 cut(s) 380
AciI CCGC 3 cut(s) 120, 269, 440
AclI AACGTT 1 cut(s) 684
AcoI YGGCCR 1 cut(s) 460
AcuI CTGAAG 1 cut(s) 657
AfaI GTAC 3 cut(s) 156, 298, 561
AfiI CCNNNNNNNGG 6 cut(s) 58, 380, 439, 728, 779, 995
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 6 cut(s) 255, 583, 726, 908, 950, 1091
AjnI CCWGG 2 cut(s) 539, 777
AjuI GAANNNNNNNTTGG 2 cut(s) 1139, 1171
Alw21I GWGCWC 3 cut(s) 239, 568, 1114
AlwNI CAGNNNCTG 4 cut(s) 380, 428, 473, 716
Ama87I CYCGRG 1 cut(s) 1061
AoxI GGCC 3 cut(s) 282, 382, 460
ArsI GACNNNNNNTTYG 2 cut(s) 33, 65
AseI ATTAAT 1 cut(s) 981
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 797
AspS9I GGNCC 3 cut(s) 283, 383, 731
AsuHPI GGTGA 3 cut(s) 297, 683, 830
AsuII TTCGAA 1 cut(s) 39
AvaI CYCGRG 1 cut(s) 1061
AvaII GGWCC 1 cut(s) 731
AxyI CCTNAGG 2 cut(s) 57, 336
BaeI ACNNNNGTAYC 2 cut(s) 543, 576
BalI TGGCCA 1 cut(s) 462
BanI GGYRCC 1 cut(s) 800
BanII GRGCYC 1 cut(s) 239
BarI GAAGNNNNNNTAC 2 cut(s) 552, 584
BauI CACGAG 2 cut(s) 660, 1187
BbsI GAAGAC 2 cut(s) 23, 761
Bbv12I GWGCWC 3 cut(s) 239, 568, 1114
BbvCI CCTCAGC 1 cut(s) 930
BccI CCATC 2 cut(s) 150, 1090
BciT130I CCWGG 2 cut(s) 541, 779
BciVI GTATCC 2 cut(s) 126, 632
BfaI CTAG 2 cut(s) 243, 594
BfmI CTRYAG 3 cut(s) 648, 893, 990
BfoI RGCGCY 1 cut(s) 798
BfrI CTTAAG 1 cut(s) 158
BfuAI ACCTGC 1 cut(s) 316
BfuI GTATCC 2 cut(s) 126, 632
BglII AGATCT 1 cut(s) 6
BmcAI AGTACT 1 cut(s) 156
Bme1390I CCNGG 2 cut(s) 541, 779
Bme18I GGWCC 1 cut(s) 731
BmeT110I CYCGRG 1 cut(s) 1061
BmgT120I GGNCC 3 cut(s) 283, 383, 731
BmiI GGNNCC 4 cut(s) 285, 342, 538, 802
BmrFI CCNGG 2 cut(s) 541, 779
BmrI ACTGGG 1 cut(s) 288
BmsI GCATC 6 cut(s) 123, 368, 416, 479, 722, 1018
BmuI ACTGGG 1 cut(s) 288
BpiI GAAGAC 2 cut(s) 23, 761
BpmI CTGGAG 1 cut(s) 627
Bpu10I CCTNAGC 2 cut(s) 627, 930
Bpu14I TTCGAA 1 cut(s) 39
BpuEI CTTGAG 2 cut(s) 8, 84
BsaAI YACGTR 1 cut(s) 563
BsaBI GATNNNNATC 1 cut(s) 137
BsaJI CCNNGG 3 cut(s) 540, 778, 1062
BsaXI ACNNNNNCTCC 2 cut(s) 1042, 1072
Bsc4I CCNNNNNNNGG 6 cut(s) 58, 380, 439, 728, 779, 995
Bse118I RCCGGY 4 cut(s) 355, 403, 791, 803
Bse1I ACTGG 4 cut(s) 294, 374, 422, 1029
Bse21I CCTNAGG 2 cut(s) 57, 336
Bse3DI GCAATG 2 cut(s) 857, 1041
Bse8I GATNNNNATC 1 cut(s) 137
BseBI CCWGG 2 cut(s) 541, 779
BseDI CCNNGG 3 cut(s) 540, 778, 1062
BseGI GGATG 4 cut(s) 169, 323, 1015, 1033
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 6 cut(s) 58, 380, 439, 728, 779, 995
BseMI GCAATG 2 cut(s) 857, 1041
BseMII CTCAG 4 cut(s) 71, 350, 618, 944
BseNI ACTGG 4 cut(s) 294, 374, 422, 1029
BseRI GAGGAG 1 cut(s) 1079
BseYI CCCAGC 1 cut(s) 589
BsgI GTGCAG 2 cut(s) 108, 893
BshFI GGCC 3 cut(s) 284, 384, 462
BshNI GGYRCC 1 cut(s) 800
BsiHKAI GWGCWC 3 cut(s) 239, 568, 1114
BsiHKCI CYCGRG 1 cut(s) 1061
BsiSI CCGG 4 cut(s) 356, 404, 792, 804
BslFI GGGAC 4 cut(s) 43, 416, 557, 1032
BslI CCNNNNNNNGG 6 cut(s) 58, 380, 439, 728, 779, 995
BsmFI GGGAC 4 cut(s) 43, 416, 557, 1032
BsnI GGCC 3 cut(s) 284, 384, 462
BsoBI CYCGRG 1 cut(s) 1061
Bsp119I TTCGAA 1 cut(s) 39
Bsp1286I GDGCHC 3 cut(s) 239, 568, 1114
Bsp143I GATC 4 cut(s) 6, 475, 820, 1177
BspACI CCGC 3 cut(s) 120, 269, 440
BspANI GGCC 3 cut(s) 284, 384, 462
BspCNI CTCAG 4 cut(s) 70, 349, 619, 943
BspLI GGNNCC 4 cut(s) 285, 342, 538, 802
BspMAI CTGCAG 2 cut(s) 652, 897
BspMI ACCTGC 1 cut(s) 316
BspQI GCTCTTC 1 cut(s) 573
BspT104I TTCGAA 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 800
BspTI CTTAAG 1 cut(s) 158
BsrDI GCAATG 2 cut(s) 857, 1041
BsrFI RCCGGY 4 cut(s) 355, 403, 791, 803
BsrI ACTGG 4 cut(s) 294, 374, 422, 1029
BssAI RCCGGY 4 cut(s) 355, 403, 791, 803
BssECI CCNNGG 3 cut(s) 540, 778, 1062
BssMI GATC 4 cut(s) 6, 475, 820, 1177
BssSI CACGAG 2 cut(s) 660, 1187
Bst2BI CACGAG 2 cut(s) 660, 1187
Bst2UI CCWGG 2 cut(s) 541, 779
Bst4CI ACNGT 5 cut(s) 112, 319, 556, 849, 1054
Bst6I CTCTTC 3 cut(s) 221, 573, 761
BstAFI CTTAAG 1 cut(s) 158
BstAPI GCANNNNNTGC 1 cut(s) 901
BstBAI YACGTR 1 cut(s) 563
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 7 cut(s) 357, 405, 793, 805, 864, 876, 1138
BstDEI CTNAG 6 cut(s) 57, 279, 336, 627, 930, 1174
BstENI CCTNNNNNAGG 2 cut(s) 726, 993
BstF5I GGATG 4 cut(s) 169, 323, 1015, 1033
BstH2I RGCGCY 1 cut(s) 798
BstHHI GCGC 1 cut(s) 797
BstKTI GATC 4 cut(s) 9, 478, 823, 1180
BstMBI GATC 4 cut(s) 6, 475, 820, 1177
BstMWI GCNNNNNNNGC 7 cut(s) 266, 572, 647, 710, 794, 863, 901
BstNI CCWGG 2 cut(s) 541, 779
BstNSI RCATGY 2 cut(s) 1140, 1186
BstSCI CCNGG 2 cut(s) 539, 777
BstSFI CTRYAG 3 cut(s) 648, 893, 990
BstV2I GAAGAC 2 cut(s) 23, 761
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
Bsu36I CCTNAGG 2 cut(s) 57, 336
BsuI GTATCC 2 cut(s) 126, 632
BsuRI GGCC 3 cut(s) 284, 384, 462
BtgZI GCGATG 1 cut(s) 1109
BtsCI GGATG 4 cut(s) 169, 323, 1015, 1033
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 7 cut(s) 357, 405, 793, 805, 864, 876, 1138
CaiI CAGNNNCTG 4 cut(s) 380, 428, 473, 716
CfoI GCGC 1 cut(s) 797
Cfr10I RCCGGY 4 cut(s) 355, 403, 791, 803
Cfr13I GGNCC 3 cut(s) 283, 383, 731
CseI GACGC 1 cut(s) 249
Csp6I GTAC 3 cut(s) 155, 297, 560
CviAII CATG 3 cut(s) 526, 1137, 1183
CviQI GTAC 3 cut(s) 155, 297, 560
DdeI CTNAG 6 cut(s) 57, 279, 336, 627, 930, 1174
DpnI GATC 4 cut(s) 8, 477, 822, 1179
DpnII GATC 4 cut(s) 6, 475, 820, 1177
EaeI YGGCCR 1 cut(s) 460
Eam1104I CTCTTC 3 cut(s) 221, 573, 761
EarI CTCTTC 3 cut(s) 221, 573, 761
Ecl136II GAGCTC 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 731
Eco53kI GAGCTC 1 cut(s) 237
Eco57I CTGAAG 1 cut(s) 657
Eco81I CCTNAGG 2 cut(s) 57, 336
Eco88I CYCGRG 1 cut(s) 1061
EcoICRI GAGCTC 1 cut(s) 237
EcoNI CCTNNNNNAGG 2 cut(s) 726, 993
EcoO109I RGGNCCY 2 cut(s) 283, 731
EcoRII CCWGG 2 cut(s) 539, 777
EcoT38I GRGCYC 1 cut(s) 239
FaeI CATG 3 cut(s) 529, 1140, 1186
FaiI YATR 9 cut(s) 459, 527, 869, 888, 890, 902, 1079, 1138, 1184
FaqI GGGAC 4 cut(s) 43, 416, 557, 1032
FatI CATG 3 cut(s) 525, 1136, 1182
FauI CCCGC 1 cut(s) 127
FokI GGATG 4 cut(s) 176, 310, 1022, 1040
FriOI GRGCYC 1 cut(s) 239
FspBI CTAG 2 cut(s) 243, 594
GlaI GCGC 1 cut(s) 796
GsaI CCCAGC 1 cut(s) 593
GsuI CTGGAG 1 cut(s) 627
HaeII RGCGCY 1 cut(s) 798
HaeIII GGCC 3 cut(s) 284, 384, 462
HapII CCGG 4 cut(s) 356, 404, 792, 804
HgaI GACGC 1 cut(s) 249
HhaI GCGC 1 cut(s) 797
Hin1II CATG 3 cut(s) 529, 1140, 1186
Hin6I GCGC 1 cut(s) 795
HinP1I GCGC 1 cut(s) 795
HincII GTYRAC 2 cut(s) 222, 264
HindII GTYRAC 2 cut(s) 222, 264
HinfI GANTC 3 cut(s) 19, 31, 62
HpaII CCGG 4 cut(s) 356, 404, 792, 804
HphI GGTGA 3 cut(s) 297, 683, 830
Hpy166II GTNNAC 3 cut(s) 222, 264, 299
Hpy188I TCNGA 3 cut(s) 196, 475, 774
Hpy188III TCNNGA 7 cut(s) 13, 59, 521, 824, 908, 1061, 1088
Hpy8I GTNNAC 3 cut(s) 222, 264, 299
HpyAV CCTTC 7 cut(s) 312, 396, 444, 732, 980, 989, 998
HpyCH4III ACNGT 5 cut(s) 112, 319, 556, 849, 1054
HpyCH4IV ACGT 3 cut(s) 562, 684, 1084
HpyF10VI GCNNNNNNNGC 7 cut(s) 266, 572, 647, 710, 794, 863, 901
HpyF3I CTNAG 6 cut(s) 57, 279, 336, 627, 930, 1174
HpySE526I ACGT 3 cut(s) 562, 684, 1084
Hsp92II CATG 3 cut(s) 529, 1140, 1186
HspAI GCGC 1 cut(s) 795
KroI GCCGGC 4 cut(s) 355, 403, 791, 803
KroNI GCCGGC 4 cut(s) 357, 405, 793, 805
Kzo9I GATC 4 cut(s) 6, 475, 820, 1177
LguI GCTCTTC 1 cut(s) 573
LmnI GCTCC 6 cut(s) 316, 346, 646, 658, 697, 1066
LweI GCATC 6 cut(s) 123, 368, 416, 479, 722, 1018
MaeI CTAG 2 cut(s) 243, 594
MaeII ACGT 3 cut(s) 562, 684, 1084
MaeIII GTNAC 5 cut(s) 319, 364, 412, 836, 1054
MalI GATC 4 cut(s) 8, 477, 822, 1179
MboI GATC 4 cut(s) 6, 475, 820, 1177
MboII GAAGA 9 cut(s) 16, 28, 91, 191, 238, 560, 748, 761, 1163
MfeI CAATTG 1 cut(s) 600
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 3 cut(s) 239, 568, 1114
MlsI TGGCCA 1 cut(s) 462
MluCI AATT 5 cut(s) 493, 507, 600, 945, 1154
MluNI TGGCCA 1 cut(s) 462
MlyI GAGTC 3 cut(s) 13, 25, 56
MmeI TCCRAC 1 cut(s) 338
Mox20I TGGCCA 1 cut(s) 462
MroNI GCCGGC 4 cut(s) 355, 403, 791, 803
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 462
MseI TTAA 4 cut(s) 159, 350, 944, 981
Msp20I TGGCCA 1 cut(s) 462
MspA1I CMGCKG 2 cut(s) 122, 647
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 4 cut(s) 356, 404, 792, 804
MspR9I CCNGG 2 cut(s) 541, 779
MunI CAATTG 1 cut(s) 600
MvaI CCWGG 2 cut(s) 541, 779
MwoI GCNNNNNNNGC 7 cut(s) 266, 572, 647, 710, 794, 863, 901
NaeI GCCGGC 4 cut(s) 357, 405, 793, 805
NdeII GATC 4 cut(s) 6, 475, 820, 1177
NgoMIV GCCGGC 4 cut(s) 355, 403, 791, 803
NlaIII CATG 3 cut(s) 529, 1140, 1186
NlaIV GGNNCC 4 cut(s) 285, 342, 538, 802
NmuCI GTSAC 3 cut(s) 319, 836, 1054
NspI RCATGY 2 cut(s) 1140, 1186
NspV TTCGAA 1 cut(s) 39
PaeI GCATGC 1 cut(s) 1140
PaqCI CACCTGC 1 cut(s) 316
PciSI GCTCTTC 1 cut(s) 573
PcsI WCGNNNNNNNCGW 1 cut(s) 568
PdiI GCCGGC 4 cut(s) 357, 405, 793, 805
PdmI GAANNNNTTC 1 cut(s) 8
PflMI CCANNNNNTGG 1 cut(s) 380
PleI GAGTC 3 cut(s) 13, 25, 56
PpsI GAGTC 3 cut(s) 13, 25, 56
Ppu21I YACGTR 1 cut(s) 563
PpuMI RGGWCCY 1 cut(s) 731
PshBI ATTAAT 1 cut(s) 981
Psp124BI GAGCTC 1 cut(s) 239
Psp1406I AACGTT 1 cut(s) 684
Psp5II RGGWCCY 1 cut(s) 731
Psp6I CCWGG 2 cut(s) 539, 777
PspFI CCCAGC 1 cut(s) 589
PspGI CCWGG 2 cut(s) 539, 777
PspN4I GGNNCC 4 cut(s) 285, 342, 538, 802
PspPI GGNCC 3 cut(s) 283, 383, 731
PspPPI RGGWCCY 1 cut(s) 731
PstI CTGCAG 2 cut(s) 652, 897
PstNI CAGNNNCTG 4 cut(s) 380, 428, 473, 716
PsuI RGATCY 1 cut(s) 6
PvuII CAGCTG 1 cut(s) 647
RsaI GTAC 3 cut(s) 156, 298, 561
RsaNI GTAC 3 cut(s) 155, 297, 560
SacI GAGCTC 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 573
SaqAI TTAA 4 cut(s) 159, 350, 944, 981
Sau3AI GATC 4 cut(s) 6, 475, 820, 1177
Sau96I GGNCC 3 cut(s) 283, 383, 731
ScaI AGTACT 1 cut(s) 156
SchI GAGTC 3 cut(s) 13, 25, 56
ScrFI CCNGG 2 cut(s) 541, 779
SduI GDGCHC 3 cut(s) 239, 568, 1114
SfaNI GCATC 6 cut(s) 123, 368, 416, 479, 722, 1018
SfcI CTRYAG 3 cut(s) 648, 893, 990
SfuI TTCGAA 1 cut(s) 39
SinI GGWCC 1 cut(s) 731
SmlI CTYRAG 3 cut(s) 23, 99, 158
SmoI CTYRAG 3 cut(s) 23, 99, 158
SphI GCATGC 1 cut(s) 1140
Sse9I AATT 5 cut(s) 493, 507, 600, 945, 1154
SsiI CCGC 3 cut(s) 120, 269, 440
SspMI CTAG 2 cut(s) 243, 594
SstI GAGCTC 1 cut(s) 239
StyD4I CCNGG 2 cut(s) 539, 777
TaaI ACNGT 5 cut(s) 112, 319, 556, 849, 1054
TaiI ACGT 3 cut(s) 565, 687, 1087
TaqI TCGA 1 cut(s) 39
TasI AATT 5 cut(s) 493, 507, 600, 945, 1154
TatI WGTACW 2 cut(s) 154, 296
TauI GCSGC 2 cut(s) 272, 443
Tru1I TTAA 4 cut(s) 159, 350, 944, 981
Tru9I TTAA 4 cut(s) 159, 350, 944, 981
TseFI GTSAC 3 cut(s) 319, 836, 1054
Tsp45I GTSAC 3 cut(s) 319, 836, 1054
TspDTI ATGAA 2 cut(s) 17, 999
Van91I CCANNNNNTGG 1 cut(s) 380
Vha464I CTTAAG 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 731
VspI ATTAAT 1 cut(s) 981
XagI CCTNNNNNAGG 2 cut(s) 726, 993
XceI RCATGY 2 cut(s) 1140, 1186
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 243, 594
ZrmI AGTACT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.