Rmu_sc0001940.1_g000019

Ubiquitin receptor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001940.1
Physical Location & Seq
Forward (+)
59457 .. 64409
4953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001940.1_g000019.1.cds

Sequence Viewer

Length: 1479 bp
atgaagatcttcgtgaagactctcaaggggactcacttcgaagtcgaagtcaagcctcaggactcggttgctgatgtgaagaagtcgatagaaacttctcaaggttcggatgtatatcctgctacacaacagatgctaatccatcaaggaaaagtacttaaggatgggacgacattggaagaaaacaaagttgtggaaaatagctttgttgtgataatgttgacgaagagtaagagctcatccagtgaaggctcaagtgcatcaactgcaactacgactaaggcaccacagcccagtacaccttcagctgctccaactgcaacatccacgacacctcaggctcctgtctcaacatcagcaccgccagcatctgttaccacgccagctcccgtctcttcggccacaacagatttagattcctatggccaagcagcatctgatctagtagctggaaacaacttggagggaacaattcagcaaattctggatatgggtggaggaacctgggacagggatactgttgtacgtgctcttcgtgctgcgttcaacaacccagctagagcaattgattacttatattcaggtatccctgagcaacctgaagctcctgtagctcgtatccctgtgagtggtgatgctgcaaaccttccagcacaacctcctcagtcagcacagccagcatccactccttcaacaggacctaatgccaatcctttagacctctttccacagggtatccctgagcaacctgaagctcctgtagctcgtatccctgtgagtggtgatgctgcaaaccttccagcacaacctcctcagtcagcacagccagcatccactccttcaacaggacctaatgccaatcctttagacctctttccacagggccttccgaacctaggtgccggagctggagcgggtgcgggtgcgggtaatcttgattttctgcgtgacagcccacagttccaagccttgcgagctatggtgcaagctaatccacaaatattgcagcctatgcttcaagagttgggaaaacaaaatcctcagcttggccttccgaacctaggtgccggagctggagcgggtgcgggtgcgggtaatcttgattttctgcgtgacagcccacagttccaagccttgcgagctatggtgcaagctaatccacaaatattgcagcctatgcttcaagagttgggaaaacaaaatcctcagcttgtaaggttaattcaacaacatcaggctgacttccttcgcctaattaatgaacctgtcgaaggaggagaaggggatgtgttgggacaactggatgcagcaatgccacaggcaataactgtcactcccgaggagcgtgaagccatagaacgtcttgaagcaatgggctttgatagagcacttgtattggaggtgttcgttgcctgcaacaggaatgaagaattggctgcaaactacctcttagatcacatgcacgagtttgaggattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

492

Amino Acids

51.56

Weight (kDa)

4.6

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 283, 899, 1064
AccBSI CCGCTC 2 cut(s) 914, 1079
AciI CCGC 7 cut(s) 362, 914, 920, 926, 1079, 1085, 1091
AcoI YGGCCR 2 cut(s) 399, 424
AcsI RAATTY 1 cut(s) 480
AcuI CTGAAG 3 cut(s) 288, 621, 771
AfaI GTAC 3 cut(s) 156, 298, 525
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 7 cut(s) 547, 693, 843, 1019, 1184, 1226, 1367
AjnI CCWGG 1 cut(s) 503
AjuI GAANNNNNNNTTGG 2 cut(s) 1415, 1447
Alw21I GWGCWC 3 cut(s) 239, 532, 1390
Alw26I GTCTC 2 cut(s) 352, 397
AlwNI CAGNNNCTG 2 cut(s) 371, 437
Ama87I CYCGRG 1 cut(s) 1337
AoxI GGCC 4 cut(s) 399, 424, 883, 1048
ApeKI GCWGC 9 cut(s) 308, 431, 539, 638, 788, 1006, 1171, 1307, 1436
ApoI RAATTY 1 cut(s) 480
ArsI GACNNNNNNTTYG 2 cut(s) 33, 65
AseI ATTAAT 1 cut(s) 1257
Asp700I GAANNNNTTC 1 cut(s) 8
AspA2I CCTAGG 2 cut(s) 895, 1060
AspS9I GGNCC 3 cut(s) 698, 848, 883
AsuHPI GGTGA 2 cut(s) 644, 794
AsuII TTCGAA 1 cut(s) 39
AvaI CYCGRG 1 cut(s) 1337
AvaII GGWCC 2 cut(s) 698, 848
AvrII CCTAGG 2 cut(s) 895, 1060
AxyI CCTNAGG 2 cut(s) 57, 336
BaeI ACNNNNGTAYC 2 cut(s) 507, 540
BalI TGGCCA 1 cut(s) 426
BanI GGYRCC 3 cut(s) 283, 899, 1064
BanII GRGCYC 1 cut(s) 239
BarI GAAGNNNNNNTAC 2 cut(s) 516, 548
BauI CACGAG 1 cut(s) 1463
BbsI GAAGAC 1 cut(s) 23
Bbv12I GWGCWC 3 cut(s) 239, 532, 1390
BbvCI CCTCAGC 2 cut(s) 1041, 1206
BbvI GCAGC 9 cut(s) 295, 443, 526, 625, 775, 1018, 1183, 1319, 1423
BccI CCATC 2 cut(s) 150, 158
BciT130I CCWGG 1 cut(s) 505
BciVI GTATCC 5 cut(s) 508, 596, 629, 746, 779
BcoDI GTCTC 2 cut(s) 352, 397
BfaI CTAG 4 cut(s) 443, 558, 896, 1061
BfmI CTRYAG 2 cut(s) 609, 759
BfrI CTTAAG 1 cut(s) 158
BfuI GTATCC 5 cut(s) 508, 596, 629, 746, 779
BglII AGATCT 1 cut(s) 6
BisI GCNGC 9 cut(s) 309, 432, 540, 639, 789, 1007, 1172, 1308, 1437
BlnI CCTAGG 2 cut(s) 895, 1060
BlsI GCNGC 9 cut(s) 310, 433, 541, 640, 790, 1008, 1173, 1309, 1438
BmcAI AGTACT 1 cut(s) 156
Bme1390I CCNGG 1 cut(s) 505
Bme18I GGWCC 2 cut(s) 698, 848
BmeT110I CYCGRG 1 cut(s) 1337
BmgT120I GGNCC 3 cut(s) 698, 848, 883
BmiI GGNNCC 5 cut(s) 285, 342, 502, 901, 1066
BmrFI CCNGG 1 cut(s) 505
BmrI ACTGGG 1 cut(s) 288
BmsI GCATC 9 cut(s) 123, 269, 377, 443, 625, 689, 775, 839, 1294
BmuI ACTGGG 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 23
BpmI CTGGAG 2 cut(s) 930, 1095
Bpu10I CCTNAGC 4 cut(s) 591, 741, 1041, 1206
Bpu14I TTCGAA 1 cut(s) 39
BpuEI CTTGAG 3 cut(s) 8, 84, 238
BsaAI YACGTR 1 cut(s) 527
BsaBI GATNNNNATC 2 cut(s) 114, 137
BsaJI CCNNGG 4 cut(s) 504, 895, 1060, 1338
BsaXI ACNNNNNCTCC 4 cut(s) 370, 400, 1318, 1348
Bse1I ACTGG 3 cut(s) 243, 294, 1305
Bse21I CCTNAGG 2 cut(s) 57, 336
Bse3DI GCAATG 2 cut(s) 1317, 1377
Bse8I GATNNNNATC 2 cut(s) 114, 137
BseBI CCWGG 1 cut(s) 505
BseDI CCNNGG 4 cut(s) 504, 895, 1060, 1338
BseGI GGATG 8 cut(s) 115, 169, 239, 323, 680, 830, 1291, 1309
BseJI GATNNNNATC 2 cut(s) 114, 137
BseMI GCAATG 2 cut(s) 1317, 1377
BseMII CTCAG 8 cut(s) 71, 350, 582, 677, 732, 827, 1055, 1220
BseNI ACTGG 3 cut(s) 243, 294, 1305
BseRI GAGGAG 4 cut(s) 651, 801, 1290, 1355
BseXI GCAGC 9 cut(s) 295, 443, 526, 625, 775, 1018, 1183, 1319, 1423
BseYI CCCAGC 1 cut(s) 553
BshFI GGCC 4 cut(s) 401, 426, 885, 1050
BshNI GGYRCC 3 cut(s) 283, 899, 1064
BsiHKAI GWGCWC 3 cut(s) 239, 532, 1390
BsiHKCI CYCGRG 1 cut(s) 1337
BsiSI CCGG 2 cut(s) 903, 1068
BslFI GGGAC 4 cut(s) 43, 181, 521, 1308
BsmAI GTCTC 2 cut(s) 352, 397
BsmBI CGTCTC 1 cut(s) 397
BsmFI GGGAC 4 cut(s) 43, 181, 521, 1308
BsnI GGCC 4 cut(s) 401, 426, 885, 1050
BsoBI CYCGRG 1 cut(s) 1337
Bsp119I TTCGAA 1 cut(s) 39
Bsp1286I GDGCHC 3 cut(s) 239, 532, 1390
Bsp143I GATC 3 cut(s) 6, 439, 1453
BspACI CCGC 7 cut(s) 362, 914, 920, 926, 1079, 1085, 1091
BspANI GGCC 4 cut(s) 401, 426, 885, 1050
BspCNI CTCAG 8 cut(s) 70, 349, 583, 676, 733, 826, 1054, 1219
BspLI GGNNCC 5 cut(s) 285, 342, 502, 901, 1066
BspQI GCTCTTC 1 cut(s) 537
BspT104I TTCGAA 1 cut(s) 39
BspT107I GGYRCC 3 cut(s) 283, 899, 1064
BspTI CTTAAG 1 cut(s) 158
BsrBI CCGCTC 2 cut(s) 914, 1079
BsrDI GCAATG 2 cut(s) 1317, 1377
BsrI ACTGG 3 cut(s) 243, 294, 1305
BssECI CCNNGG 4 cut(s) 504, 895, 1060, 1338
BssMI GATC 3 cut(s) 6, 439, 1453
BssSI CACGAG 1 cut(s) 1463
BssT1I CCWWGG 2 cut(s) 895, 1060
Bst2BI CACGAG 1 cut(s) 1463
Bst2UI CCWGG 1 cut(s) 505
Bst4CI ACNGT 4 cut(s) 520, 960, 1125, 1330
Bst6I CTCTTC 3 cut(s) 221, 400, 537
BstAFI CTTAAG 1 cut(s) 158
BstAPI GCANNNNNTGC 3 cut(s) 266, 1012, 1177
BstBAI YACGTR 1 cut(s) 527
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 9 cut(s) 366, 384, 678, 828, 975, 987, 1140, 1152, 1414
BstENI CCTNNNNNAGG 5 cut(s) 508, 693, 843, 1269, 1417
BstF5I GGATG 8 cut(s) 115, 169, 239, 323, 680, 830, 1291, 1309
BstKTI GATC 3 cut(s) 9, 442, 1456
BstMAI GTCTC 2 cut(s) 352, 397
BstMBI GATC 3 cut(s) 6, 439, 1453
BstNI CCWGG 1 cut(s) 505
BstNSI RCATGY 1 cut(s) 1462
BstSCI CCNGG 1 cut(s) 503
BstSFI CTRYAG 2 cut(s) 609, 759
BstV1I GCAGC 9 cut(s) 295, 443, 526, 625, 775, 1018, 1183, 1319, 1423
BstV2I GAAGAC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
Bsu36I CCTNAGG 2 cut(s) 57, 336
BsuI GTATCC 5 cut(s) 508, 596, 629, 746, 779
BsuRI GGCC 4 cut(s) 401, 426, 885, 1050
BtsCI GGATG 8 cut(s) 115, 169, 239, 323, 680, 830, 1291, 1309
BtsIMutI CAGTG 1 cut(s) 250
Cac8I GCNNGC 9 cut(s) 366, 384, 678, 828, 975, 987, 1140, 1152, 1414
CaiI CAGNNNCTG 2 cut(s) 371, 437
Cfr13I GGNCC 3 cut(s) 698, 848, 883
Csp6I GTAC 3 cut(s) 155, 297, 524
CspCI CAANNNNNGTGG 4 cut(s) 984, 1019, 1149, 1184
CviAII CATG 1 cut(s) 1459
CviQI GTAC 3 cut(s) 155, 297, 524
DpnI GATC 3 cut(s) 8, 441, 1455
DpnII GATC 3 cut(s) 6, 439, 1453
EaeI YGGCCR 2 cut(s) 399, 424
Eam1104I CTCTTC 3 cut(s) 221, 400, 537
EarI CTCTTC 3 cut(s) 221, 400, 537
Ecl136II GAGCTC 1 cut(s) 237
Eco130I CCWWGG 2 cut(s) 895, 1060
Eco24I GRGCYC 1 cut(s) 239
Eco47I GGWCC 2 cut(s) 698, 848
Eco53kI GAGCTC 1 cut(s) 237
Eco57I CTGAAG 3 cut(s) 288, 621, 771
Eco81I CCTNAGG 2 cut(s) 57, 336
Eco88I CYCGRG 1 cut(s) 1337
EcoICRI GAGCTC 1 cut(s) 237
EcoNI CCTNNNNNAGG 5 cut(s) 508, 693, 843, 1269, 1417
EcoO109I RGGNCCY 3 cut(s) 698, 848, 883
EcoRII CCWGG 1 cut(s) 503
EcoT14I CCWWGG 2 cut(s) 895, 1060
EcoT38I GRGCYC 1 cut(s) 239
ErhI CCWWGG 2 cut(s) 895, 1060
Esp3I CGTCTC 1 cut(s) 397
FaeI CATG 1 cut(s) 1462
FaqI GGGAC 4 cut(s) 43, 181, 521, 1308
FatI CATG 1 cut(s) 1458
FauI CCCGC 6 cut(s) 907, 913, 919, 1072, 1078, 1084
Fnu4HI GCNGC 9 cut(s) 309, 432, 540, 639, 789, 1007, 1172, 1308, 1437
FokI GGATG 8 cut(s) 122, 176, 226, 310, 667, 817, 1298, 1316
FriOI GRGCYC 1 cut(s) 239
Fsp4HI GCNGC 9 cut(s) 309, 432, 540, 639, 789, 1007, 1172, 1308, 1437
FspBI CTAG 4 cut(s) 443, 558, 896, 1061
GluI GCNGC 9 cut(s) 309, 432, 540, 639, 789, 1007, 1172, 1308, 1437
GsaI CCCAGC 1 cut(s) 557
GsuI CTGGAG 2 cut(s) 930, 1095
HaeIII GGCC 4 cut(s) 401, 426, 885, 1050
HapII CCGG 2 cut(s) 903, 1068
Hin1II CATG 1 cut(s) 1462
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 4 cut(s) 19, 31, 62, 416
HpaII CCGG 2 cut(s) 903, 1068
HphI GGTGA 2 cut(s) 644, 794
Hpy166II GTNNAC 2 cut(s) 222, 299
Hpy188I TCNGA 4 cut(s) 109, 439, 891, 1056
Hpy188III TCNNGA 9 cut(s) 13, 59, 485, 935, 1019, 1100, 1184, 1337, 1364
Hpy8I GTNNAC 2 cut(s) 222, 299
HpyCH4III ACNGT 4 cut(s) 520, 960, 1125, 1330
HpyCH4IV ACGT 2 cut(s) 526, 1360
HpySE526I ACGT 2 cut(s) 526, 1360
Hsp92II CATG 1 cut(s) 1462
Kzo9I GATC 3 cut(s) 6, 439, 1453
LguI GCTCTTC 1 cut(s) 537
Lsp1109I GCAGC 9 cut(s) 295, 443, 526, 625, 775, 1018, 1183, 1319, 1423
LweI GCATC 9 cut(s) 123, 269, 377, 443, 625, 689, 775, 839, 1294
MaeI CTAG 4 cut(s) 443, 558, 896, 1061
MaeII ACGT 2 cut(s) 526, 1360
MaeIII GTNAC 4 cut(s) 373, 947, 1112, 1330
MalI GATC 3 cut(s) 8, 441, 1455
MbiI CCGCTC 2 cut(s) 914, 1079
MboI GATC 3 cut(s) 6, 439, 1453
MboII GAAGA 8 cut(s) 16, 28, 91, 191, 238, 387, 524, 1439
MfeI CAATTG 1 cut(s) 564
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 3 cut(s) 239, 532, 1390
MlsI TGGCCA 1 cut(s) 426
MluCI AATT 6 cut(s) 471, 480, 564, 1221, 1254, 1430
MluNI TGGCCA 1 cut(s) 426
MlyI GAGTC 3 cut(s) 13, 25, 56
MmeI TCCRAC 1 cut(s) 338
Mox20I TGGCCA 1 cut(s) 426
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 426
MseI TTAA 3 cut(s) 159, 1220, 1257
Msp20I TGGCCA 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 308
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 2 cut(s) 903, 1068
MspR9I CCNGG 1 cut(s) 505
MunI CAATTG 1 cut(s) 564
MvaI CCWGG 1 cut(s) 505
NdeII GATC 3 cut(s) 6, 439, 1453
NlaIII CATG 1 cut(s) 1462
NlaIV GGNNCC 5 cut(s) 285, 342, 502, 901, 1066
NmuCI GTSAC 3 cut(s) 947, 1112, 1330
NspI RCATGY 1 cut(s) 1462
NspV TTCGAA 1 cut(s) 39
PciSI GCTCTTC 1 cut(s) 537
PcsI WCGNNNNNNNCGW 1 cut(s) 532
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 416
PkrI GCNGC 9 cut(s) 310, 433, 541, 640, 790, 1008, 1173, 1309, 1438
PleI GAGTC 3 cut(s) 13, 25, 56
PpsI GAGTC 3 cut(s) 13, 25, 56
Ppu21I YACGTR 1 cut(s) 527
PpuMI RGGWCCY 2 cut(s) 698, 848
PshBI ATTAAT 1 cut(s) 1257
Psp124BI GAGCTC 1 cut(s) 239
Psp5II RGGWCCY 2 cut(s) 698, 848
Psp6I CCWGG 1 cut(s) 503
PspFI CCCAGC 1 cut(s) 553
PspGI CCWGG 1 cut(s) 503
PspN4I GGNNCC 5 cut(s) 285, 342, 502, 901, 1066
PspPI GGNCC 3 cut(s) 698, 848, 883
PspPPI RGGWCCY 2 cut(s) 698, 848
PstNI CAGNNNCTG 2 cut(s) 371, 437
PsuI RGATCY 1 cut(s) 6
PvuII CAGCTG 1 cut(s) 308
RsaI GTAC 3 cut(s) 156, 298, 525
RsaNI GTAC 3 cut(s) 155, 297, 524
SacI GAGCTC 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 537
SaqAI TTAA 3 cut(s) 159, 1220, 1257
SatI GCNGC 9 cut(s) 309, 432, 540, 639, 789, 1007, 1172, 1308, 1437
Sau3AI GATC 3 cut(s) 6, 439, 1453
Sau96I GGNCC 3 cut(s) 698, 848, 883
ScaI AGTACT 1 cut(s) 156
SchI GAGTC 3 cut(s) 13, 25, 56
ScrFI CCNGG 1 cut(s) 505
SduI GDGCHC 3 cut(s) 239, 532, 1390
SfaNI GCATC 9 cut(s) 123, 269, 377, 443, 625, 689, 775, 839, 1294
SfcI CTRYAG 2 cut(s) 609, 759
SfuI TTCGAA 1 cut(s) 39
SinI GGWCC 2 cut(s) 698, 848
SmlI CTYRAG 4 cut(s) 23, 99, 158, 253
SmoI CTYRAG 4 cut(s) 23, 99, 158, 253
Sse9I AATT 6 cut(s) 471, 480, 564, 1221, 1254, 1430
SsiI CCGC 7 cut(s) 362, 914, 920, 926, 1079, 1085, 1091
SspI AATATT 2 cut(s) 1002, 1167
SspMI CTAG 4 cut(s) 443, 558, 896, 1061
SstI GAGCTC 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 503
StyI CCWWGG 2 cut(s) 895, 1060
TaaI ACNGT 4 cut(s) 520, 960, 1125, 1330
TaiI ACGT 2 cut(s) 529, 1363
TaqI TCGA 4 cut(s) 39, 45, 86, 1269
TasI AATT 6 cut(s) 471, 480, 564, 1221, 1254, 1430
TatI WGTACW 2 cut(s) 154, 296
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 3 cut(s) 159, 1220, 1257
Tru9I TTAA 3 cut(s) 159, 1220, 1257
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 3 cut(s) 947, 1112, 1330
TseI GCWGC 9 cut(s) 308, 431, 539, 638, 788, 1006, 1171, 1307, 1436
Tsp45I GTSAC 3 cut(s) 947, 1112, 1330
TspDTI ATGAA 3 cut(s) 17, 1275, 1440
TspRI CASTG 1 cut(s) 250
Vha464I CTTAAG 1 cut(s) 158
VpaK11BI GGWCC 2 cut(s) 698, 848
VspI ATTAAT 1 cut(s) 1257
XagI CCTNNNNNAGG 5 cut(s) 508, 693, 843, 1269, 1417
XapI RAATTY 1 cut(s) 480
XceI RCATGY 1 cut(s) 1462
XmaJI CCTAGG 2 cut(s) 895, 1060
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 4 cut(s) 443, 558, 896, 1061
ZrmI AGTACT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.