Rw4G029680

Ubiquitin receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0005958
Physical Location & Seq
Forward (+)
56411860 .. 56416491
4632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G029680.1

Sequence Viewer

Length: 1164 bp
ATGAAGATCTTCGTGAAGACTCTCAAGGGGACTCACTTCGAAGTCGAAGTCAAGCCTCAGGACTCGGTTGCTGATGTGAAGAAGTCGATAGAAACTTCTCAAGGTTCGGATGTATATCCTGCTACACAACAGATGCTAATCCATCAAGGAAAAGTACTTAAGGATGGGACGACATTGGAAGAAAACAAAGTTGTGGAAAATAGCTTTGTTGTGATAATGTTGACGAAGAGTAAGAGCTCATCCAGTGAGGGCTCAAGTGCATCAACTGCAACTACGACTAAGGCACCACAGCCCAGTACACCTTCAGCTGCTCCAACTGCAACATCCACGACACCTCAGGCTCCTGTCTCAACATCAGCACCGCCAGCATCTGTTACCACGCCAGCTCCCGTCTCTTCGGCAACAACAGATTTAGATTCCTATGGCCAAGCAGCATCTGATCTAGTAGCTGGAAACAACTTGGAGGGAACAATTCAGCAAATTCTGGATATGGGTGGAGGAACCTGGGACAGGGATACTGTTGTACGTGCTCTTCGTGCTGCGTTCAACAACCCAGCTAGAGCAATTGATTACTTATATTCAGGTATCCCTGAGCAACCTGAAGCTCCTGTAGCTCGTATCCCTGTGAGTGGTGATGCTGCAAACCTTCCAGCACAACCTCGTCAGTCAGCACAGCCAGCATCCACTCCTTCAACAGGACCTAATGCCAATCCTTTAGACCTCTTTCCACAGGGCCTTCCGAACCTAGGTGCCGGAGCTGGAGCTGGTGCGGGTGCGGGTAATCTTGATTTTCTGCGTGACAGCCCACAGTTCCAAGCCTTGCGAGCTATGGTGCAAGCTAATCCACAAATATTGCAGCCTATGCTTCAAGAGTTGGGAAAACAAAATCCTCAGCTTGTAAGGTTAATTCAACAACATCAGGCTGATTTCCTTCGCCTAATTAATGAACCTGTCGAAGGAGGAGAAGGGGATGTGTTGGGACAACTGGATGCAGCAATGCCACAGGCAATAACTGTCACTCCCGAGGAGCGTGAAGCCATAGAACGTCTTGAAGCAATGGGCTTTGATAGAGCACTTGTATTGGAGGTGTTCGTTGCCTGCAACAGGAATGAAGAATTGGCTGCAAACTACCTCTTAGATCACATGCACGAGTTTGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03420 ko04141 map03420 map04141
Pfam Domains
Protein Families
UBA XPC-binding ubiquitin

Protein Analysis

387

Amino Acids

40.96

Weight (kDa)

4.68

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 73 3.1e-06 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 76 1.2e-17 Ubiquitin family
UBA PF00627 157 - 192 2.1e-09 UBA/TS-N domain
XPC-binding PF09280 262 - 317 4e-24 XPC-binding domain
UBA PF00627 343 - 378 7.9e-10 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 283, 749
AciI CCGC 3 cut(s) 362, 770, 776
AcoI YGGCCR 1 cut(s) 424
AcsI RAATTY 1 cut(s) 480
AcuI CTGAAG 2 cut(s) 288, 621
AfaI GTAC 3 cut(s) 156, 298, 525
AfiI CCNNNNNNNGG 6 cut(s) 510, 629, 695, 746, 956, 1104
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 5 cut(s) 547, 693, 869, 911, 1052
AjnI CCWGG 1 cut(s) 503
AjuI GAANNNNNNNTTGG 2 cut(s) 1100, 1132
Alw21I GWGCWC 3 cut(s) 239, 532, 1075
Alw26I GTCTC 2 cut(s) 352, 397
AlwNI CAGNNNCTG 2 cut(s) 371, 437
Ama87I CYCGRG 1 cut(s) 1022
AoxI GGCC 2 cut(s) 424, 733
ApeKI GCWGC 7 cut(s) 308, 431, 539, 638, 856, 992, 1121
ApoI RAATTY 1 cut(s) 480
ArsI GACNNNNNNTTYG 2 cut(s) 33, 65
AseI ATTAAT 1 cut(s) 942
Asp700I GAANNNNTTC 1 cut(s) 8
AspA2I CCTAGG 1 cut(s) 745
AspS9I GGNCC 2 cut(s) 698, 733
AsuHPI GGTGA 1 cut(s) 644
AsuII TTCGAA 1 cut(s) 39
AvaI CYCGRG 1 cut(s) 1022
AvaII GGWCC 1 cut(s) 698
AvrII CCTAGG 1 cut(s) 745
AxyI CCTNAGG 2 cut(s) 57, 336
BaeI ACNNNNGTAYC 2 cut(s) 507, 540
BalI TGGCCA 1 cut(s) 426
BanI GGYRCC 2 cut(s) 283, 749
BanII GRGCYC 2 cut(s) 239, 254
BarI GAAGNNNNNNTAC 2 cut(s) 516, 548
BauI CACGAG 1 cut(s) 1148
BbsI GAAGAC 1 cut(s) 23
Bbv12I GWGCWC 3 cut(s) 239, 532, 1075
BbvCI CCTCAGC 1 cut(s) 891
BbvI GCAGC 7 cut(s) 295, 443, 526, 625, 868, 1004, 1108
BccI CCATC 2 cut(s) 150, 158
BciT130I CCWGG 1 cut(s) 505
BciVI GTATCC 3 cut(s) 508, 596, 629
BcoDI GTCTC 2 cut(s) 352, 397
BfaI CTAG 3 cut(s) 443, 558, 746
BfmI CTRYAG 1 cut(s) 609
BfrI CTTAAG 1 cut(s) 158
BfuI GTATCC 3 cut(s) 508, 596, 629
BglII AGATCT 1 cut(s) 6
BisI GCNGC 7 cut(s) 309, 432, 540, 639, 857, 993, 1122
BlnI CCTAGG 1 cut(s) 745
BlsI GCNGC 7 cut(s) 310, 433, 541, 640, 858, 994, 1123
BmcAI AGTACT 1 cut(s) 156
Bme1390I CCNGG 1 cut(s) 505
Bme18I GGWCC 1 cut(s) 698
BmeT110I CYCGRG 1 cut(s) 1022
BmgT120I GGNCC 2 cut(s) 698, 733
BmiI GGNNCC 4 cut(s) 285, 342, 502, 751
BmrFI CCNGG 1 cut(s) 505
BmrI ACTGGG 1 cut(s) 288
BmsI GCATC 7 cut(s) 123, 269, 377, 443, 625, 689, 979
BmuI ACTGGG 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 23
BpmI CTGGAG 1 cut(s) 780
Bpu10I CCTNAGC 2 cut(s) 591, 891
Bpu14I TTCGAA 1 cut(s) 39
BpuEI CTTGAG 3 cut(s) 8, 84, 238
BsaAI YACGTR 1 cut(s) 527
BsaBI GATNNNNATC 2 cut(s) 114, 137
BsaJI CCNNGG 3 cut(s) 504, 745, 1023
BsaXI ACNNNNNCTCC 4 cut(s) 370, 400, 1003, 1033
Bsc4I CCNNNNNNNGG 6 cut(s) 510, 629, 695, 746, 956, 1104
Bse1I ACTGG 3 cut(s) 243, 294, 990
Bse21I CCTNAGG 2 cut(s) 57, 336
Bse3DI GCAATG 2 cut(s) 1002, 1062
Bse8I GATNNNNATC 2 cut(s) 114, 137
BseBI CCWGG 1 cut(s) 505
BseDI CCNNGG 3 cut(s) 504, 745, 1023
BseGI GGATG 7 cut(s) 115, 169, 239, 323, 680, 976, 994
BseJI GATNNNNATC 2 cut(s) 114, 137
BseLI CCNNNNNNNGG 6 cut(s) 510, 629, 695, 746, 956, 1104
BseMI GCAATG 2 cut(s) 1002, 1062
BseMII CTCAG 4 cut(s) 71, 350, 582, 905
BseNI ACTGG 3 cut(s) 243, 294, 990
BseRI GAGGAG 2 cut(s) 975, 1040
BseXI GCAGC 7 cut(s) 295, 443, 526, 625, 868, 1004, 1108
BseYI CCCAGC 1 cut(s) 553
BshFI GGCC 2 cut(s) 426, 735
BshNI GGYRCC 2 cut(s) 283, 749
BsiHKAI GWGCWC 3 cut(s) 239, 532, 1075
BsiHKCI CYCGRG 1 cut(s) 1022
BsiSI CCGG 1 cut(s) 753
BslFI GGGAC 4 cut(s) 43, 181, 521, 993
BslI CCNNNNNNNGG 6 cut(s) 510, 629, 695, 746, 956, 1104
BsmAI GTCTC 2 cut(s) 352, 397
BsmBI CGTCTC 1 cut(s) 397
BsmFI GGGAC 4 cut(s) 43, 181, 521, 993
BsnI GGCC 2 cut(s) 426, 735
BsoBI CYCGRG 1 cut(s) 1022
Bsp119I TTCGAA 1 cut(s) 39
Bsp1286I GDGCHC 4 cut(s) 239, 254, 532, 1075
Bsp143I GATC 3 cut(s) 6, 439, 1138
BspACI CCGC 3 cut(s) 362, 770, 776
BspANI GGCC 2 cut(s) 426, 735
BspCNI CTCAG 4 cut(s) 70, 349, 583, 904
BspLI GGNNCC 4 cut(s) 285, 342, 502, 751
BspQI GCTCTTC 1 cut(s) 537
BspT104I TTCGAA 1 cut(s) 39
BspT107I GGYRCC 2 cut(s) 283, 749
BspTI CTTAAG 1 cut(s) 158
BsrDI GCAATG 2 cut(s) 1002, 1062
BsrI ACTGG 3 cut(s) 243, 294, 990
BssECI CCNNGG 3 cut(s) 504, 745, 1023
BssMI GATC 3 cut(s) 6, 439, 1138
BssSI CACGAG 1 cut(s) 1148
BssT1I CCWWGG 1 cut(s) 745
Bst2BI CACGAG 1 cut(s) 1148
Bst2UI CCWGG 1 cut(s) 505
Bst4CI ACNGT 3 cut(s) 520, 810, 1015
Bst6I CTCTTC 3 cut(s) 221, 400, 537
BstAFI CTTAAG 1 cut(s) 158
BstAPI GCANNNNNTGC 2 cut(s) 266, 862
BstBAI YACGTR 1 cut(s) 527
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 6 cut(s) 366, 384, 678, 825, 837, 1099
BstDEI CTNAG 6 cut(s) 57, 279, 336, 591, 891, 1135
BstENI CCTNNNNNAGG 4 cut(s) 508, 693, 954, 1102
BstF5I GGATG 7 cut(s) 115, 169, 239, 323, 680, 976, 994
BstKTI GATC 3 cut(s) 9, 442, 1141
BstMAI GTCTC 2 cut(s) 352, 397
BstMBI GATC 3 cut(s) 6, 439, 1138
BstMWI GCNNNNNNNGC 8 cut(s) 266, 317, 365, 536, 611, 677, 824, 862
BstNI CCWGG 1 cut(s) 505
BstNSI RCATGY 1 cut(s) 1147
BstSCI CCNGG 1 cut(s) 503
BstSFI CTRYAG 1 cut(s) 609
BstV1I GCAGC 7 cut(s) 295, 443, 526, 625, 868, 1004, 1108
BstV2I GAAGAC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
Bsu36I CCTNAGG 2 cut(s) 57, 336
BsuI GTATCC 3 cut(s) 508, 596, 629
BsuRI GGCC 2 cut(s) 426, 735
BtsCI GGATG 7 cut(s) 115, 169, 239, 323, 680, 976, 994
BtsIMutI CAGTG 1 cut(s) 250
Cac8I GCNNGC 6 cut(s) 366, 384, 678, 825, 837, 1099
CaiI CAGNNNCTG 2 cut(s) 371, 437
Cfr13I GGNCC 2 cut(s) 698, 733
Csp6I GTAC 3 cut(s) 155, 297, 524
CspCI CAANNNNNGTGG 2 cut(s) 834, 869
CviAII CATG 1 cut(s) 1144
CviQI GTAC 3 cut(s) 155, 297, 524
DdeI CTNAG 6 cut(s) 57, 279, 336, 591, 891, 1135
DpnI GATC 3 cut(s) 8, 441, 1140
DpnII GATC 3 cut(s) 6, 439, 1138
EaeI YGGCCR 1 cut(s) 424
Eam1104I CTCTTC 3 cut(s) 221, 400, 537
EarI CTCTTC 3 cut(s) 221, 400, 537
Ecl136II GAGCTC 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 745
Eco24I GRGCYC 2 cut(s) 239, 254
Eco47I GGWCC 1 cut(s) 698
Eco53kI GAGCTC 1 cut(s) 237
Eco57I CTGAAG 2 cut(s) 288, 621
Eco81I CCTNAGG 2 cut(s) 57, 336
Eco88I CYCGRG 1 cut(s) 1022
EcoICRI GAGCTC 1 cut(s) 237
EcoNI CCTNNNNNAGG 4 cut(s) 508, 693, 954, 1102
EcoO109I RGGNCCY 2 cut(s) 698, 733
EcoRII CCWGG 1 cut(s) 503
EcoT14I CCWWGG 1 cut(s) 745
EcoT38I GRGCYC 2 cut(s) 239, 254
ErhI CCWWGG 1 cut(s) 745
Esp3I CGTCTC 1 cut(s) 397
FaeI CATG 1 cut(s) 1147
FaiI YATR 8 cut(s) 115, 423, 491, 577, 830, 863, 1040, 1145
FaqI GGGAC 4 cut(s) 43, 181, 521, 993
FatI CATG 1 cut(s) 1143
FauI CCCGC 2 cut(s) 763, 769
Fnu4HI GCNGC 7 cut(s) 309, 432, 540, 639, 857, 993, 1122
FokI GGATG 7 cut(s) 122, 176, 226, 310, 667, 983, 1001
FriOI GRGCYC 2 cut(s) 239, 254
Fsp4HI GCNGC 7 cut(s) 309, 432, 540, 639, 857, 993, 1122
FspBI CTAG 3 cut(s) 443, 558, 746
GluI GCNGC 7 cut(s) 309, 432, 540, 639, 857, 993, 1122
GsaI CCCAGC 1 cut(s) 557
GsuI CTGGAG 1 cut(s) 780
HaeIII GGCC 2 cut(s) 426, 735
HapII CCGG 1 cut(s) 753
Hin1II CATG 1 cut(s) 1147
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 4 cut(s) 19, 31, 62, 416
HpaII CCGG 1 cut(s) 753
HphI GGTGA 1 cut(s) 644
Hpy166II GTNNAC 2 cut(s) 222, 299
Hpy188I TCNGA 3 cut(s) 109, 439, 741
Hpy188III TCNNGA 7 cut(s) 13, 59, 485, 785, 869, 1022, 1049
Hpy8I GTNNAC 2 cut(s) 222, 299
HpyAV CCTTC 7 cut(s) 312, 656, 699, 746, 941, 950, 959
HpyCH4III ACNGT 3 cut(s) 520, 810, 1015
HpyCH4IV ACGT 2 cut(s) 526, 1045
HpyF10VI GCNNNNNNNGC 8 cut(s) 266, 317, 365, 536, 611, 677, 824, 862
HpyF3I CTNAG 6 cut(s) 57, 279, 336, 591, 891, 1135
HpySE526I ACGT 2 cut(s) 526, 1045
Hsp92II CATG 1 cut(s) 1147
Kzo9I GATC 3 cut(s) 6, 439, 1138
LguI GCTCTTC 1 cut(s) 537
LmnI GCTCC 7 cut(s) 316, 346, 391, 610, 755, 761, 1027
Lsp1109I GCAGC 7 cut(s) 295, 443, 526, 625, 868, 1004, 1108
LweI GCATC 7 cut(s) 123, 269, 377, 443, 625, 689, 979
MaeI CTAG 3 cut(s) 443, 558, 746
MaeII ACGT 2 cut(s) 526, 1045
MaeIII GTNAC 3 cut(s) 373, 797, 1015
MalI GATC 3 cut(s) 8, 441, 1140
MboI GATC 3 cut(s) 6, 439, 1138
MboII GAAGA 8 cut(s) 16, 28, 91, 191, 238, 387, 524, 1124
MfeI CAATTG 1 cut(s) 564
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 4 cut(s) 239, 254, 532, 1075
MlsI TGGCCA 1 cut(s) 426
MluCI AATT 6 cut(s) 471, 480, 564, 906, 939, 1115
MluNI TGGCCA 1 cut(s) 426
MlyI GAGTC 3 cut(s) 13, 25, 56
MmeI TCCRAC 1 cut(s) 338
Mox20I TGGCCA 1 cut(s) 426
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 426
MseI TTAA 3 cut(s) 159, 905, 942
Msp20I TGGCCA 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 308
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 1 cut(s) 753
MspR9I CCNGG 1 cut(s) 505
MunI CAATTG 1 cut(s) 564
MvaI CCWGG 1 cut(s) 505
MwoI GCNNNNNNNGC 8 cut(s) 266, 317, 365, 536, 611, 677, 824, 862
NdeII GATC 3 cut(s) 6, 439, 1138
NlaIII CATG 1 cut(s) 1147
NlaIV GGNNCC 4 cut(s) 285, 342, 502, 751
NmuCI GTSAC 2 cut(s) 797, 1015
NspI RCATGY 1 cut(s) 1147
NspV TTCGAA 1 cut(s) 39
PciSI GCTCTTC 1 cut(s) 537
PcsI WCGNNNNNNNCGW 1 cut(s) 532
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 416
PkrI GCNGC 7 cut(s) 310, 433, 541, 640, 858, 994, 1123
PleI GAGTC 3 cut(s) 13, 25, 56
PpsI GAGTC 3 cut(s) 13, 25, 56
Ppu21I YACGTR 1 cut(s) 527
PpuMI RGGWCCY 1 cut(s) 698
PshBI ATTAAT 1 cut(s) 942
Psp124BI GAGCTC 1 cut(s) 239
Psp5II RGGWCCY 1 cut(s) 698
Psp6I CCWGG 1 cut(s) 503
PspFI CCCAGC 1 cut(s) 553
PspGI CCWGG 1 cut(s) 503
PspN4I GGNNCC 4 cut(s) 285, 342, 502, 751
PspPI GGNCC 2 cut(s) 698, 733
PspPPI RGGWCCY 1 cut(s) 698
PstNI CAGNNNCTG 2 cut(s) 371, 437
PsuI RGATCY 1 cut(s) 6
PvuII CAGCTG 1 cut(s) 308
RsaI GTAC 3 cut(s) 156, 298, 525
RsaNI GTAC 3 cut(s) 155, 297, 524
SacI GAGCTC 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 537
SaqAI TTAA 3 cut(s) 159, 905, 942
SatI GCNGC 7 cut(s) 309, 432, 540, 639, 857, 993, 1122
Sau3AI GATC 3 cut(s) 6, 439, 1138
Sau96I GGNCC 2 cut(s) 698, 733
ScaI AGTACT 1 cut(s) 156
SchI GAGTC 3 cut(s) 13, 25, 56
ScrFI CCNGG 1 cut(s) 505
SduI GDGCHC 4 cut(s) 239, 254, 532, 1075
SfaNI GCATC 7 cut(s) 123, 269, 377, 443, 625, 689, 979
SfcI CTRYAG 1 cut(s) 609
SfuI TTCGAA 1 cut(s) 39
SinI GGWCC 1 cut(s) 698
SmlI CTYRAG 4 cut(s) 23, 99, 158, 253
SmoI CTYRAG 4 cut(s) 23, 99, 158, 253
Sse9I AATT 6 cut(s) 471, 480, 564, 906, 939, 1115
SsiI CCGC 3 cut(s) 362, 770, 776
SspI AATATT 1 cut(s) 852
SspMI CTAG 3 cut(s) 443, 558, 746
SstI GAGCTC 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 503
StyI CCWWGG 1 cut(s) 745
TaaI ACNGT 3 cut(s) 520, 810, 1015
TaiI ACGT 2 cut(s) 529, 1048
TaqI TCGA 4 cut(s) 39, 45, 86, 954
TasI AATT 6 cut(s) 471, 480, 564, 906, 939, 1115
TatI WGTACW 2 cut(s) 154, 296
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 3 cut(s) 159, 905, 942
Tru9I TTAA 3 cut(s) 159, 905, 942
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 2 cut(s) 797, 1015
TseI GCWGC 7 cut(s) 308, 431, 539, 638, 856, 992, 1121
Tsp45I GTSAC 2 cut(s) 797, 1015
TspDTI ATGAA 3 cut(s) 17, 960, 1125
TspRI CASTG 1 cut(s) 250
Vha464I CTTAAG 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 698
VspI ATTAAT 1 cut(s) 942
XagI CCTNNNNNAGG 4 cut(s) 508, 693, 954, 1102
XapI RAATTY 1 cut(s) 480
XceI RCATGY 1 cut(s) 1147
XmaJI CCTAGG 1 cut(s) 745
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 3 cut(s) 443, 558, 746
ZrmI AGTACT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.