pycom16g03810

Ubiquitin receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0005958
Physical Location & Seq
Forward (+)
2363970 .. 2367835
3866 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g03810.3

Sequence Viewer

Length: 1023 bp
ATGCTAATTCATCAAGGAAAAGTGCTTAAAGATGACACAACGTTGGACGCAAATAAAGTTGCGGAAAATAGCTTTGTTGTGATAATGTTGACTAAGAGTAAGAGCCCAACTGGCGGTGAAGGTTCAGGTGCATCAACAGCGGCGACAACTGAGGCACCACAGCCAAGTGCACATACTGGTGCTCCAACTGCGACATTAACGGCAACTCCGGCCCCTGCAGCAGCCTCAGCACTGCCTGCATCTGTTACCACACCTGCTCCTGTCGCTTCGCCTACCACGGATTCACAAACTGATTCTTACGGCCAAGCAGCATCTGATCTGGTAGCTGGAACTAACTTGGAGGGAACAATTCAGCAAATTCTAGATATGGGTGGAGGGACGTGGGACAGGGATACTGTTGTACGTGCTCTCCGTGCTGCATTCAACAACCCAGCAAGAGCTATTGACTATCTTTATTCTGGTATCCCTGAGCAACCTGAAGCTCCACCTGCAGTCCCTATTCCTGTGAGTGAGCAAGTCGCAAACCCTCCAGCACAACCTCCACAGTCAGCACAACCAGCATCCGCTCCTCCAAGCAGACCTAATGCCGATCCTTTAAACCTGTTTCCACAGGGCCTTCCAAACATGGGTGCTGGTGGTGCAGGCAATCTTGATTTTCTTCGTGACAACCAACAGTTCCAAGCCTTGCGATCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTTCAAGAGTTGGGGAAACAAAACCCTAATCTAGTGAGGCTAATTGGCGCGCATCAGGCTGACTTCCTTCGCCTGATTAACGAACCTGCTGAAGGTGGAGAAGGGAATGTACTGGGGGATGCAGCAGTGCCACAGGCAATAACTATCACTCGTGAGGAGCGTGAAGCTATAGAACGTCTTGAAGCAATGGGGTTCGCTCGAGCAATTGTATTGCAGGTGTTCTTTGCCTGCAACAAGAACGAAGAATTGGCCGCCAACTACCTCTTAGACCACATGCATGAATTTGAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03420 ko04141 map03420 map04141
Pfam Domains
Protein Families
UBA XPC-binding ubiquitin

Protein Analysis

341

Amino Acids

35.66

Weight (kDa)

4.62

Isoelectric Point (pI)

51.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 262, 496, 934
Acc36I ACCTGC 4 cut(s) 262, 496, 823, 934
AccB1I GGYRCC 1 cut(s) 154
AccBSI CCGCTC 1 cut(s) 566
AccII CGCG 1 cut(s) 779
AciI CCGC 5 cut(s) 62, 114, 140, 564, 981
AclI AACGTT 1 cut(s) 41
AclWI GGATC 1 cut(s) 584
AcoI YGGCCR 2 cut(s) 301, 978
AcsI RAATTY 2 cut(s) 357, 1010
AcuI CTGAAG 2 cut(s) 498, 840
AfaI GTAC 2 cut(s) 402, 840
AfiI CCNNNNNNNGG 3 cut(s) 113, 626, 821
AgsI TTSAA 3 cut(s) 424, 734, 911
AjiI CACGTC 1 cut(s) 381
AjuI GAANNNNNNNTTGG 2 cut(s) 959, 991
AluBI AGCT 5 cut(s) 72, 326, 440, 482, 896
AluI AGCT 5 cut(s) 72, 326, 440, 482, 896
Alw21I GWGCWC 3 cut(s) 172, 184, 409
Alw44I GTGCAC 1 cut(s) 168
AlwI GGATC 1 cut(s) 584
AlwNI CAGNNNCTG 1 cut(s) 314
Ama87I CYCGRG 1 cut(s) 927
AoxI GGCC 4 cut(s) 210, 301, 613, 978
ApaLI GTGCAC 1 cut(s) 168
ApeKI GCWGC 6 cut(s) 218, 221, 308, 416, 721, 851
ApoI RAATTY 2 cut(s) 357, 1010
AspLEI GCGC 2 cut(s) 779, 781
AspS9I GGNCC 2 cut(s) 211, 613
AsuHPI GGTGA 1 cut(s) 128
AvaI CYCGRG 1 cut(s) 927
BaeGI GKGCMC 1 cut(s) 172
BaeI ACNNNNGTAYC 2 cut(s) 384, 417
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 107
BarI GAAGNNNNNNTAC 2 cut(s) 822, 854
BauI CACGAG 1 cut(s) 879
Bbv12I GWGCWC 3 cut(s) 172, 184, 409
BbvCI CCTCAGC 1 cut(s) 226
BbvI GCAGC 6 cut(s) 230, 233, 320, 403, 733, 863
BceAI ACGGC 2 cut(s) 216, 316
BciVI GTATCC 2 cut(s) 385, 473
BfaI CTAG 2 cut(s) 362, 761
BfmI CTRYAG 3 cut(s) 216, 489, 897
BfuAI ACCTGC 4 cut(s) 262, 496, 823, 934
BfuI GTATCC 2 cut(s) 385, 473
BglI GCCNNNNNGGC 1 cut(s) 111
BisI GCNGC 8 cut(s) 141, 219, 222, 309, 417, 722, 852, 981
BlsI GCNGC 8 cut(s) 142, 220, 223, 310, 418, 723, 853, 982
BmeT110I CYCGRG 1 cut(s) 927
BmgBI CACGTC 1 cut(s) 381
BmgT120I GGNCC 2 cut(s) 211, 613
BmiI GGNNCC 2 cut(s) 156, 213
BmrI ACTGGG 1 cut(s) 851
BmsI GCATC 6 cut(s) 140, 248, 320, 569, 790, 838
BmuI ACTGGG 1 cut(s) 851
BpmI CTGGAG 1 cut(s) 513
Bpu10I CCTNAGC 2 cut(s) 226, 468
BsaAI YACGTR 1 cut(s) 404
BsaJI CCNNGG 1 cut(s) 276
BsaXI ACNNNNNCTCC 8 cut(s) 166, 190, 196, 220, 241, 271, 393, 423
Bsc4I CCNNNNNNNGG 3 cut(s) 113, 626, 821
Bse1I ACTGG 3 cut(s) 115, 181, 846
Bse3DI GCAATG 1 cut(s) 921
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 2 cut(s) 560, 853
BseLI CCNNNNNNNGG 3 cut(s) 113, 626, 821
BseMI GCAATG 1 cut(s) 921
BseMII CTCAG 3 cut(s) 141, 240, 459
BseNI ACTGG 3 cut(s) 115, 181, 846
BsePI GCGCGC 1 cut(s) 777
BseRI GAGGAG 2 cut(s) 558, 899
BseSI GKGCMC 1 cut(s) 172
BseXI GCAGC 6 cut(s) 230, 233, 320, 403, 733, 863
BseYI CCCAGC 1 cut(s) 430
BsgI GTGCAG 2 cut(s) 660, 719
Bsh1236I CGCG 1 cut(s) 779
BshFI GGCC 4 cut(s) 212, 303, 615, 980
BshNI GGYRCC 1 cut(s) 154
BsiHKAI GWGCWC 3 cut(s) 172, 184, 409
BsiHKCI CYCGRG 1 cut(s) 927
BsiSI CCGG 1 cut(s) 209
BslFI GGGAC 3 cut(s) 391, 398, 479
BslI CCNNNNNNNGG 3 cut(s) 113, 626, 821
BsmFI GGGAC 3 cut(s) 391, 398, 479
BsmI GAATGC 1 cut(s) 419
BsnI GGCC 4 cut(s) 212, 303, 615, 980
BsoBI CYCGRG 1 cut(s) 927
Bsp1286I GDGCHC 4 cut(s) 107, 172, 184, 409
Bsp143I GATC 3 cut(s) 316, 589, 689
BspACI CCGC 5 cut(s) 62, 114, 140, 564, 981
BspANI GGCC 4 cut(s) 212, 303, 615, 980
BspCNI CTCAG 3 cut(s) 142, 239, 460
BspFNI CGCG 1 cut(s) 779
BspLI GGNNCC 2 cut(s) 156, 213
BspMAI CTGCAG 2 cut(s) 220, 493
BspMI ACCTGC 4 cut(s) 262, 496, 823, 934
BspPI GGATC 1 cut(s) 584
BspT107I GGYRCC 1 cut(s) 154
BsrBI CCGCTC 1 cut(s) 566
BsrDI GCAATG 1 cut(s) 921
BsrI ACTGG 3 cut(s) 115, 181, 846
BssECI CCNNGG 1 cut(s) 276
BssHII GCGCGC 1 cut(s) 777
BssMI GATC 3 cut(s) 316, 589, 689
BssSI CACGAG 1 cut(s) 879
Bst2BI CACGAG 1 cut(s) 879
Bst4CI ACNGT 3 cut(s) 397, 546, 675
BstAPI GCANNNNNTGC 2 cut(s) 236, 727
BstBAI YACGTR 1 cut(s) 404
BstC8I GCNNGC 5 cut(s) 237, 643, 702, 779, 958
BstDEI CTNAG 5 cut(s) 93, 150, 226, 468, 994
BstDSI CCRYGG 1 cut(s) 276
BstENI CCTNNNNNAGG 1 cut(s) 819
BstF5I GGATG 2 cut(s) 560, 853
BstFNI CGCG 1 cut(s) 779
BstHHI GCGC 2 cut(s) 779, 781
BstKTI GATC 3 cut(s) 319, 592, 692
BstMBI GATC 3 cut(s) 316, 589, 689
BstNSI RCATGY 1 cut(s) 1006
BstSFI CTRYAG 3 cut(s) 216, 489, 897
BstSLI GKGCMC 1 cut(s) 172
BstUI CGCG 1 cut(s) 779
BstV1I GCAGC 6 cut(s) 230, 233, 320, 403, 733, 863
BsuI GTATCC 2 cut(s) 385, 473
BsuRI GGCC 4 cut(s) 212, 303, 615, 980
BtgI CCRYGG 1 cut(s) 276
BtrI CACGTC 1 cut(s) 381
BtsCI GGATG 2 cut(s) 560, 853
BtsI GCAGTG 2 cut(s) 230, 861
BtsIMutI CAGTG 2 cut(s) 230, 861
BveI ACCTGC 4 cut(s) 262, 496, 823, 934
Cac8I GCNNGC 5 cut(s) 237, 643, 702, 779, 958
CaiI CAGNNNCTG 1 cut(s) 314
CfoI GCGC 2 cut(s) 779, 781
Cfr13I GGNCC 2 cut(s) 211, 613
CseI GACGC 1 cut(s) 56
Csp6I GTAC 2 cut(s) 401, 839
CspCI CAANNNNNGTGG 2 cut(s) 699, 734
CviAII CATG 3 cut(s) 625, 1003, 1007
CviQI GTAC 2 cut(s) 401, 839
DdeI CTNAG 5 cut(s) 93, 150, 226, 468, 994
DpnI GATC 3 cut(s) 318, 591, 691
DpnII GATC 3 cut(s) 316, 589, 689
DraI TTTAAA 1 cut(s) 597
EaeI YGGCCR 2 cut(s) 301, 978
Eco24I GRGCYC 1 cut(s) 107
Eco57I CTGAAG 2 cut(s) 498, 840
Eco88I CYCGRG 1 cut(s) 927
EcoNI CCTNNNNNAGG 1 cut(s) 819
EcoO109I RGGNCCY 1 cut(s) 613
EcoT22I ATGCAT 1 cut(s) 1008
EcoT38I GRGCYC 1 cut(s) 107
FaeI CATG 3 cut(s) 628, 1006, 1010
FaiI YATR 8 cut(s) 174, 368, 626, 695, 728, 899, 1004, 1008
FaqI GGGAC 3 cut(s) 391, 398, 479
FatI CATG 3 cut(s) 624, 1002, 1006
Fnu4HI GCNGC 8 cut(s) 141, 219, 222, 309, 417, 722, 852, 981
FokI GGATG 2 cut(s) 547, 860
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 8 cut(s) 141, 219, 222, 309, 417, 722, 852, 981
FspBI CTAG 2 cut(s) 362, 761
GlaI GCGC 2 cut(s) 778, 780
GluI GCNGC 8 cut(s) 141, 219, 222, 309, 417, 722, 852, 981
GsaI CCCAGC 1 cut(s) 434
GsuI CTGGAG 1 cut(s) 513
HaeIII GGCC 4 cut(s) 212, 303, 615, 980
HapII CCGG 1 cut(s) 209
HgaI GACGC 1 cut(s) 56
HhaI GCGC 2 cut(s) 779, 781
Hin1II CATG 3 cut(s) 628, 1006, 1010
Hin6I GCGC 2 cut(s) 777, 779
HinP1I GCGC 2 cut(s) 777, 779
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 2 cut(s) 281, 293
HpaII CCGG 1 cut(s) 209
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 2 cut(s) 90, 170
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 6 cut(s) 362, 650, 662, 734, 881, 908
Hpy8I GTNNAC 2 cut(s) 90, 170
HpyAV CCTTC 5 cut(s) 113, 626, 806, 815, 824
HpyCH4III ACNGT 3 cut(s) 397, 546, 675
HpyCH4IV ACGT 4 cut(s) 41, 380, 403, 904
HpyF3I CTNAG 5 cut(s) 93, 150, 226, 468, 994
HpySE526I ACGT 4 cut(s) 41, 380, 403, 904
Hsp92II CATG 3 cut(s) 628, 1006, 1010
HspAI GCGC 2 cut(s) 777, 779
Kzo9I GATC 3 cut(s) 316, 589, 689
LmnI GCTCC 5 cut(s) 187, 262, 487, 571, 886
Lsp1109I GCAGC 6 cut(s) 230, 233, 320, 403, 733, 863
LweI GCATC 6 cut(s) 140, 248, 320, 569, 790, 838
MaeI CTAG 2 cut(s) 362, 761
MaeII ACGT 4 cut(s) 41, 380, 403, 904
MaeIII GTNAC 2 cut(s) 244, 662
MalI GATC 3 cut(s) 318, 591, 691
MbiI CCGCTC 1 cut(s) 566
MboI GATC 3 cut(s) 316, 589, 689
MboII GAAGA 2 cut(s) 650, 983
MfeI CAATTG 1 cut(s) 933
MhlI GDGCHC 4 cut(s) 107, 172, 184, 409
MluCI AATT 7 cut(s) 6, 348, 357, 771, 933, 974, 1010
MmeI TCCRAC 2 cut(s) 24, 209
Mph1103I ATGCAT 1 cut(s) 1008
MseI TTAA 4 cut(s) 27, 197, 596, 807
MslI CAYNNNNRTG 2 cut(s) 177, 1005
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 1 cut(s) 209
MunI CAATTG 1 cut(s) 933
Mva1269I GAATGC 1 cut(s) 419
MvnI CGCG 1 cut(s) 779
NdeII GATC 3 cut(s) 316, 589, 689
NlaIII CATG 3 cut(s) 628, 1006, 1010
NlaIV GGNNCC 2 cut(s) 156, 213
NmuCI GTSAC 1 cut(s) 662
NsiI ATGCAT 1 cut(s) 1008
NspI RCATGY 1 cut(s) 1006
PaeR7I CTCGAG 1 cut(s) 927
PaqCI CACCTGC 3 cut(s) 262, 496, 934
PauI GCGCGC 1 cut(s) 777
PcsI WCGNNNNNNNCGW 2 cut(s) 409, 886
PctI GAATGC 1 cut(s) 419
PfeI GAWTC 2 cut(s) 281, 293
PkrI GCNGC 8 cut(s) 142, 220, 223, 310, 418, 723, 853, 982
Ppu21I YACGTR 1 cut(s) 404
Psp1406I AACGTT 1 cut(s) 41
PspFI CCCAGC 1 cut(s) 430
PspN4I GGNNCC 2 cut(s) 156, 213
PspPI GGNCC 2 cut(s) 211, 613
PspXI VCTCGAGB 1 cut(s) 927
PstI CTGCAG 2 cut(s) 220, 493
PstNI CAGNNNCTG 1 cut(s) 314
PteI GCGCGC 1 cut(s) 777
RsaI GTAC 2 cut(s) 402, 840
RsaNI GTAC 2 cut(s) 401, 839
RseI CAYNNNNRTG 2 cut(s) 177, 1005
SaqAI TTAA 4 cut(s) 27, 197, 596, 807
SatI GCNGC 8 cut(s) 141, 219, 222, 309, 417, 722, 852, 981
Sau3AI GATC 3 cut(s) 316, 589, 689
Sau96I GGNCC 2 cut(s) 211, 613
SduI GDGCHC 4 cut(s) 107, 172, 184, 409
SfaNI GCATC 6 cut(s) 140, 248, 320, 569, 790, 838
SfcI CTRYAG 3 cut(s) 216, 489, 897
Sfr274I CTCGAG 1 cut(s) 927
SlaI CTCGAG 1 cut(s) 927
SmiMI CAYNNNNRTG 2 cut(s) 177, 1005
SmlI CTYRAG 1 cut(s) 927
SmoI CTYRAG 1 cut(s) 927
Sse9I AATT 7 cut(s) 6, 348, 357, 771, 933, 974, 1010
SsiI CCGC 5 cut(s) 62, 114, 140, 564, 981
SspI AATATT 1 cut(s) 717
SspMI CTAG 2 cut(s) 362, 761
TaaI ACNGT 3 cut(s) 397, 546, 675
TaiI ACGT 4 cut(s) 44, 383, 406, 907
TaqI TCGA 1 cut(s) 928
TasI AATT 7 cut(s) 6, 348, 357, 771, 933, 974, 1010
TatI WGTACW 1 cut(s) 838
TauI GCSGC 2 cut(s) 143, 983
TfiI GAWTC 2 cut(s) 281, 293
Tru1I TTAA 4 cut(s) 27, 197, 596, 807
Tru9I TTAA 4 cut(s) 27, 197, 596, 807
TscAI CASTG 2 cut(s) 237, 861
TseFI GTSAC 1 cut(s) 662
TseI GCWGC 6 cut(s) 218, 221, 308, 416, 721, 851
Tsp45I GTSAC 1 cut(s) 662
TspDTI ATGAA 1 cut(s) 1023
TspGWI ACGGA 2 cut(s) 293, 401
TspRI CASTG 2 cut(s) 237, 861
VneI GTGCAC 1 cut(s) 168
XagI CCTNNNNNAGG 1 cut(s) 819
XapI RAATTY 2 cut(s) 357, 1010
XbaI TCTAGA 1 cut(s) 361
XceI RCATGY 1 cut(s) 1006
XhoI CTCGAG 1 cut(s) 927
XspI CTAG 2 cut(s) 362, 761
Zsp2I ATGCAT 1 cut(s) 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.