MD13G1043000.v1.1

Ubiquitin receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0005958
Physical Location & Seq
Forward (+)
3009266 .. 3013445
4180 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1043000.v1.1.491

Sequence Viewer

Length: 1164 bp
ATGAAGATCTTCGTCAAGACTCTCAAGGGCTCCCACTTCGACGTCGAAGTGAAGCCTGAGGACACGGTTGCTGATGTGAAGAAACATATAGAAGCTTGCAAGGGTTCAGATGTATACCCTGCTCCACAACAGATGCTAATTCATCAAGGAAAAGTGCTTAAAGATGACACAACATTGGACGAAAATAAAGTTGCGGAAAATAGCTTTGTTGTGATAATGTTGACTAAGAGTAAGAGCCCACCCGGTGAAGGTTCAGGTGCATCAACTGCAGCTACAACTAAGGCACCACAGCCAAGTGCACATACTGGTCCTCCAACTGTGACATTCACAGCAAGTCCAGCTCCAGCAGCAGCCTCAACACTGCCCGCATCTGTTGCCATGCCTGCTCCTGTTGCTTCGGCTACCACGGATTCACAAGCTGATTCTTACGGCCAAGCAGCATCTGATCTGGTAGCTGGAACTAACTTGGAGGGAACAATTCAGCAAATTCTAGATATGGGTGGAGGGACATGGGACAGGGATACTGTTGTACGTGCTCTTCGTGCTGCATTCAACAACCCAGCAAGAGCTATTGACTATCTTTATTCTGGTATCCCTGAGCAACCTGAAGCTCCACCTGCAGTCCGTATTCCTGTCGGTGGGCAAGTCACAAACCCTCCACCACAACCTCCACAGTCAGCACAACCAGCATCTGCTCCTCCAAGCAGACCTAATGCCAATCCTTTAAACCTTTTTCCACAGGGCCTTCCGAATGTGGGTGCTGGTGCTGGTGCTGGTGCTGCAGGCAATCTTGATTTTCTACGCGACAACCAACAGTTCCAAGCATTGCGATCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTTCAAGAGTTGGGGAAACAAAACCCTAATCTAGTGAGGCTAATTGGTGAGCATCAGGCTGACTTCCTTCGCCTGATTAATGAACCTGCTGAAGGTGGAGAAGGGAACGCACTGGGGGATGCAGCAGTGCCACAGGCAATAGCTATCACTCCTGAGGAGCGTGAAGCTATAGAACGTCTTGAAGCAATGGGGTTCGCTCGAGCAATTGTATTGCAGGTGTTCTTTGCCTGCAACAAGAACGAAGAATTGACCGCCAACTACCTCTTAGACCACATGCATGAATTTGAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03420 ko04141 map03420 map04141
Pfam Domains
Protein Families
UBA XPC-binding ubiquitin

Protein Analysis

388

Amino Acids

40.82

Weight (kDa)

4.92

Isoelectric Point (pI)

50.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 73 2.6e-06 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 76 3.3e-19 Ubiquitin family
UBA PF00627 159 - 194 2.2e-09 UBA/TS-N domain
XPC-binding PF09280 264 - 320 4.9e-23 XPC-binding domain
UBA PF00627 343 - 378 1e-08 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 625, 1075
AatII GACGTC 1 cut(s) 45
Acc36I ACCTGC 3 cut(s) 625, 964, 1075
AccB1I GGYRCC 1 cut(s) 283
AccI GTMKAC 1 cut(s) 114
AccII CGCG 1 cut(s) 804
AciI CCGC 3 cut(s) 194, 366, 1122
AcoI YGGCCR 1 cut(s) 430
AcsI RAATTY 2 cut(s) 486, 1151
AcuI CTGAAG 2 cut(s) 627, 981
AcyI GRCGYC 1 cut(s) 42
AdeI CACNNNGTG 1 cut(s) 245
AfaI GTAC 1 cut(s) 531
AfiI CCNNNNNNNGG 4 cut(s) 248, 638, 755, 962
AgsI TTSAA 3 cut(s) 553, 875, 1052
Alw21I GWGCWC 2 cut(s) 301, 538
Alw44I GTGCAC 1 cut(s) 297
AlwNI CAGNNNCTG 2 cut(s) 443, 692
Ama87I CYCGRG 1 cut(s) 1068
AoxI GGCC 2 cut(s) 430, 742
ApaLI GTGCAC 1 cut(s) 297
ApeKI GCWGC 8 cut(s) 269, 347, 350, 437, 545, 779, 862, 992
ApoI RAATTY 2 cut(s) 486, 1151
AseI ATTAAT 1 cut(s) 948
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 308, 742
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 2 cut(s) 257, 929
AvaI CYCGRG 1 cut(s) 1068
AvaII GGWCC 1 cut(s) 308
AxyI CCTNAGG 2 cut(s) 57, 1023
BaeGI GKGCMC 1 cut(s) 301
BaeI ACNNNNGTAYC 2 cut(s) 513, 546
BanI GGYRCC 1 cut(s) 283
BanII GRGCYC 2 cut(s) 32, 239
BarI GAAGNNNNNNTAC 2 cut(s) 522, 554
Bbv12I GWGCWC 2 cut(s) 301, 538
BbvI GCAGC 8 cut(s) 281, 359, 362, 449, 532, 766, 874, 1004
BceAI ACGGC 1 cut(s) 445
BciVI GTATCC 2 cut(s) 514, 602
BcnI CCSGG 1 cut(s) 243
BfaI CTAG 2 cut(s) 491, 902
BfmI CTRYAG 4 cut(s) 267, 618, 780, 1038
BfuAI ACCTGC 3 cut(s) 625, 964, 1075
BfuI GTATCC 2 cut(s) 514, 602
BglII AGATCT 1 cut(s) 6
BisI GCNGC 8 cut(s) 270, 348, 351, 438, 546, 780, 863, 993
BlsI GCNGC 8 cut(s) 271, 349, 352, 439, 547, 781, 864, 994
Bme1390I CCNGG 1 cut(s) 243
Bme18I GGWCC 1 cut(s) 308
BmeT110I CYCGRG 1 cut(s) 1068
BmgT120I GGNCC 2 cut(s) 308, 742
BmiI GGNNCC 2 cut(s) 31, 285
BmrFI CCNGG 1 cut(s) 243
BmrI ACTGGG 1 cut(s) 992
BmsI GCATC 7 cut(s) 123, 269, 377, 449, 698, 931, 979
BmuI ACTGGG 1 cut(s) 992
BpmI CTGGAG 1 cut(s) 327
Bpu10I CCTNAGC 1 cut(s) 597
BpuEI CTTGAG 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 243
BsaAI YACGTR 1 cut(s) 533
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 405
BsaXI ACNNNNNCTCC 4 cut(s) 295, 325, 640, 670
Bsc4I CCNNNNNNNGG 4 cut(s) 248, 638, 755, 962
Bse1I ACTGG 2 cut(s) 310, 987
Bse21I CCTNAGG 2 cut(s) 57, 1023
Bse3DI GCAATG 2 cut(s) 824, 1062
BseDI CCNNGG 1 cut(s) 405
BseGI GGATG 1 cut(s) 994
BseLI CCNNNNNNNGG 4 cut(s) 248, 638, 755, 962
BseMI GCAATG 2 cut(s) 824, 1062
BseMII CTCAG 3 cut(s) 48, 588, 1014
BseNI ACTGG 2 cut(s) 310, 987
BseRI GAGGAG 2 cut(s) 687, 1040
BseSI GKGCMC 1 cut(s) 301
BseXI GCAGC 8 cut(s) 281, 359, 362, 449, 532, 766, 874, 1004
BseYI CCCAGC 1 cut(s) 559
BsgI GTGCAG 1 cut(s) 860
Bsh1236I CGCG 1 cut(s) 804
BshFI GGCC 2 cut(s) 432, 744
BshNI GGYRCC 1 cut(s) 283
BsiHKAI GWGCWC 2 cut(s) 301, 538
BsiHKCI CYCGRG 1 cut(s) 1068
BsiSI CCGG 1 cut(s) 243
BslFI GGGAC 2 cut(s) 520, 527
BslI CCNNNNNNNGG 4 cut(s) 248, 638, 755, 962
BsmFI GGGAC 2 cut(s) 520, 527
BsmI GAATGC 1 cut(s) 548
BsnI GGCC 2 cut(s) 432, 744
BsoBI CYCGRG 1 cut(s) 1068
Bsp1286I GDGCHC 4 cut(s) 32, 239, 301, 538
Bsp143I GATC 3 cut(s) 6, 445, 830
BspACI CCGC 3 cut(s) 194, 366, 1122
BspANI GGCC 2 cut(s) 432, 744
BspCNI CTCAG 3 cut(s) 49, 589, 1015
BspFNI CGCG 1 cut(s) 804
BspLI GGNNCC 2 cut(s) 31, 285
BspMAI CTGCAG 3 cut(s) 271, 622, 784
BspMI ACCTGC 3 cut(s) 625, 964, 1075
BspQI GCTCTTC 1 cut(s) 543
BspT107I GGYRCC 1 cut(s) 283
BsrDI GCAATG 2 cut(s) 824, 1062
BsrI ACTGG 2 cut(s) 310, 987
BssECI CCNNGG 1 cut(s) 405
BssMI GATC 3 cut(s) 6, 445, 830
BssNAI GTATAC 1 cut(s) 115
BssNI GRCGYC 1 cut(s) 42
Bst1107I GTATAC 1 cut(s) 115
Bst4CI ACNGT 5 cut(s) 67, 319, 526, 675, 816
Bst6I CTCTTC 1 cut(s) 543
BstACI GRCGYC 1 cut(s) 42
BstAPI GCANNNNNTGC 3 cut(s) 266, 374, 868
BstBAI YACGTR 1 cut(s) 533
BstC8I GCNNGC 6 cut(s) 97, 366, 384, 784, 843, 1099
BstDEI CTNAG 6 cut(s) 57, 225, 279, 597, 1023, 1135
BstDSI CCRYGG 1 cut(s) 405
BstENI CCTNNNNNAGG 1 cut(s) 960
BstF5I GGATG 1 cut(s) 994
BstFNI CGCG 1 cut(s) 804
BstKTI GATC 3 cut(s) 9, 448, 833
BstMBI GATC 3 cut(s) 6, 445, 830
BstNSI RCATGY 1 cut(s) 1147
BstSCI CCNGG 1 cut(s) 241
BstSFI CTRYAG 4 cut(s) 267, 618, 780, 1038
BstSLI GKGCMC 1 cut(s) 301
BstUI CGCG 1 cut(s) 804
BstV1I GCAGC 8 cut(s) 281, 359, 362, 449, 532, 766, 874, 1004
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BstZ17I GTATAC 1 cut(s) 115
Bsu36I CCTNAGG 2 cut(s) 57, 1023
BsuI GTATCC 2 cut(s) 514, 602
BsuRI GGCC 2 cut(s) 432, 744
BtgI CCRYGG 1 cut(s) 405
BtsCI GGATG 1 cut(s) 994
BtsI GCAGTG 2 cut(s) 359, 1002
BtsIMutI CAGTG 3 cut(s) 359, 980, 1002
BveI ACCTGC 3 cut(s) 625, 964, 1075
Cac8I GCNNGC 6 cut(s) 97, 366, 384, 784, 843, 1099
CaiI CAGNNNCTG 2 cut(s) 443, 692
Cfr13I GGNCC 2 cut(s) 308, 742
Csp6I GTAC 1 cut(s) 530
CspCI CAANNNNNGTGG 2 cut(s) 840, 875
CviAII CATG 4 cut(s) 379, 510, 1144, 1148
CviQI GTAC 1 cut(s) 530
DdeI CTNAG 6 cut(s) 57, 225, 279, 597, 1023, 1135
DpnI GATC 3 cut(s) 8, 447, 832
DpnII GATC 3 cut(s) 6, 445, 830
DraI TTTAAA 1 cut(s) 726
DraIII CACNNNGTG 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 430
Eam1104I CTCTTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 543
Eco24I GRGCYC 2 cut(s) 32, 239
Eco47I GGWCC 1 cut(s) 308
Eco57I CTGAAG 2 cut(s) 627, 981
Eco81I CCTNAGG 2 cut(s) 57, 1023
Eco88I CYCGRG 1 cut(s) 1068
EcoNI CCTNNNNNAGG 1 cut(s) 960
EcoO109I RGGNCCY 1 cut(s) 742
EcoT22I ATGCAT 1 cut(s) 1149
EcoT38I GRGCYC 2 cut(s) 32, 239
FaeI CATG 4 cut(s) 382, 513, 1147, 1151
FaqI GGGAC 2 cut(s) 520, 527
FatI CATG 4 cut(s) 378, 509, 1143, 1147
FauI CCCGC 1 cut(s) 373
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 8 cut(s) 270, 348, 351, 438, 546, 780, 863, 993
FokI GGATG 1 cut(s) 1001
FriOI GRGCYC 2 cut(s) 32, 239
Fsp4HI GCNGC 8 cut(s) 270, 348, 351, 438, 546, 780, 863, 993
FspBI CTAG 2 cut(s) 491, 902
GluI GCNGC 8 cut(s) 270, 348, 351, 438, 546, 780, 863, 993
GsaI CCCAGC 1 cut(s) 563
GsuI CTGGAG 1 cut(s) 327
HaeIII GGCC 2 cut(s) 432, 744
HapII CCGG 1 cut(s) 243
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 4 cut(s) 382, 513, 1147, 1151
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HindIII AAGCTT 1 cut(s) 93
HinfI GANTC 3 cut(s) 19, 410, 422
HpaII CCGG 1 cut(s) 243
HphI GGTGA 2 cut(s) 257, 929
Hpy166II GTNNAC 3 cut(s) 115, 222, 299
Hpy188I TCNGA 3 cut(s) 109, 445, 750
Hpy188III TCNNGA 6 cut(s) 16, 491, 791, 875, 1022, 1049
Hpy8I GTNNAC 3 cut(s) 115, 222, 299
Hpy99I CGWCG 2 cut(s) 44, 47
HpyAV CCTTC 5 cut(s) 242, 755, 947, 956, 965
HpyCH4III ACNGT 5 cut(s) 67, 319, 526, 675, 816
HpyCH4IV ACGT 3 cut(s) 42, 532, 1045
HpyF3I CTNAG 6 cut(s) 57, 225, 279, 597, 1023, 1135
HpySE526I ACGT 3 cut(s) 42, 532, 1045
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 4 cut(s) 382, 513, 1147, 1151
Kzo9I GATC 3 cut(s) 6, 445, 830
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 7 cut(s) 35, 127, 346, 391, 616, 700, 1027
Lsp1109I GCAGC 8 cut(s) 281, 359, 362, 449, 532, 766, 874, 1004
LweI GCATC 7 cut(s) 123, 269, 377, 449, 698, 931, 979
MaeI CTAG 2 cut(s) 491, 902
MaeII ACGT 3 cut(s) 42, 532, 1045
MaeIII GTNAC 2 cut(s) 319, 646
MalI GATC 3 cut(s) 8, 447, 832
MboI GATC 3 cut(s) 6, 445, 830
MboII GAAGA 4 cut(s) 16, 91, 530, 1124
MfeI CAATTG 1 cut(s) 1074
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 4 cut(s) 32, 239, 301, 538
MluCI AATT 7 cut(s) 138, 477, 486, 912, 1074, 1115, 1151
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 338
Mph1103I ATGCAT 1 cut(s) 1149
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 3 cut(s) 159, 725, 948
MslI CAYNNNNRTG 1 cut(s) 1146
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 1 cut(s) 243
MunI CAATTG 1 cut(s) 1074
Mva1269I GAATGC 1 cut(s) 548
MvnI CGCG 1 cut(s) 804
NciI CCSGG 1 cut(s) 243
NdeII GATC 3 cut(s) 6, 445, 830
NlaIII CATG 4 cut(s) 382, 513, 1147, 1151
NlaIV GGNNCC 2 cut(s) 31, 285
NmuCI GTSAC 2 cut(s) 319, 646
NsiI ATGCAT 1 cut(s) 1149
NspI RCATGY 1 cut(s) 1147
PaeR7I CTCGAG 1 cut(s) 1068
PaqCI CACCTGC 2 cut(s) 625, 1075
PciSI GCTCTTC 1 cut(s) 543
PcsI WCGNNNNNNNCGW 1 cut(s) 538
PctI GAATGC 1 cut(s) 548
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 410, 422
PkrI GCNGC 8 cut(s) 271, 349, 352, 439, 547, 781, 864, 994
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Ppu21I YACGTR 1 cut(s) 533
PshBI ATTAAT 1 cut(s) 948
PspFI CCCAGC 1 cut(s) 559
PspN4I GGNNCC 2 cut(s) 31, 285
PspPI GGNCC 2 cut(s) 308, 742
PspXI VCTCGAGB 1 cut(s) 1068
PstI CTGCAG 3 cut(s) 271, 622, 784
PstNI CAGNNNCTG 2 cut(s) 443, 692
PsuI RGATCY 1 cut(s) 6
RsaI GTAC 1 cut(s) 531
RsaNI GTAC 1 cut(s) 530
RseI CAYNNNNRTG 1 cut(s) 1146
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 3 cut(s) 159, 725, 948
SatI GCNGC 8 cut(s) 270, 348, 351, 438, 546, 780, 863, 993
Sau3AI GATC 3 cut(s) 6, 445, 830
Sau96I GGNCC 2 cut(s) 308, 742
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 243
SduI GDGCHC 4 cut(s) 32, 239, 301, 538
SfaNI GCATC 7 cut(s) 123, 269, 377, 449, 698, 931, 979
SfcI CTRYAG 4 cut(s) 267, 618, 780, 1038
Sfr274I CTCGAG 1 cut(s) 1068
SinI GGWCC 1 cut(s) 308
SlaI CTCGAG 1 cut(s) 1068
SmiMI CAYNNNNRTG 1 cut(s) 1146
SmlI CTYRAG 2 cut(s) 23, 1068
SmoI CTYRAG 2 cut(s) 23, 1068
Sse9I AATT 7 cut(s) 138, 477, 486, 912, 1074, 1115, 1151
SsiI CCGC 3 cut(s) 194, 366, 1122
SspI AATATT 1 cut(s) 858
SspMI CTAG 2 cut(s) 491, 902
StyD4I CCNGG 1 cut(s) 241
TaaI ACNGT 5 cut(s) 67, 319, 526, 675, 816
TaiI ACGT 3 cut(s) 45, 535, 1048
TaqI TCGA 3 cut(s) 39, 45, 1069
TasI AATT 7 cut(s) 138, 477, 486, 912, 1074, 1115, 1151
TfiI GAWTC 2 cut(s) 410, 422
Tru1I TTAA 3 cut(s) 159, 725, 948
Tru9I TTAA 3 cut(s) 159, 725, 948
TscAI CASTG 3 cut(s) 366, 987, 1002
TseFI GTSAC 2 cut(s) 319, 646
TseI GCWGC 8 cut(s) 269, 347, 350, 437, 545, 779, 862, 992
Tsp45I GTSAC 2 cut(s) 319, 646
TspDTI ATGAA 4 cut(s) 17, 131, 966, 1164
TspGWI ACGGA 2 cut(s) 422, 614
TspRI CASTG 3 cut(s) 366, 987, 1002
VneI GTGCAC 1 cut(s) 297
VpaK11BI GGWCC 1 cut(s) 308
VspI ATTAAT 1 cut(s) 948
XagI CCTNNNNNAGG 1 cut(s) 960
XapI RAATTY 2 cut(s) 486, 1151
XbaI TCTAGA 1 cut(s) 490
XceI RCATGY 1 cut(s) 1147
XhoI CTCGAG 1 cut(s) 1068
XmiI GTMKAC 1 cut(s) 114
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 491, 902
ZraI GACGTC 1 cut(s) 43
Zsp2I ATGCAT 1 cut(s) 1149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.