Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005958

Physical Location & Seq

Genomic Coordinates Reverse (-)

30112153 .. 30117588

Gene Structure 5436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G309600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGAAGATTTTTGTCAAGACTCTCAAGGGCACTCACTTCGACGTCGAAGTGAAGCCTGAGGACACGGTTGCTGATGTGAAGAAACAGATAGAAACTAGTCAAGGTTCAGATGTATATCCTGCTTCACAACAGATGCTCATTCATCAAGGAAAAGTACTTAAAGATAGCACAACATTGGATGAAAACAAAGTTGCTGAAAACAGCTTTGTTGTGATAATGTTGACAAAGAGTAAGAGCTCGTCTGGTGAAGGTTCAGGTGCATCAACTGCTACTACAACTAAGGCACCACAGCCAAGTGCACCTTCTGCTGCTCCAACTGCGACATTAACAGCACCTCAGGCTCCAATACCAACCTCAGCACCGCCTGCTTCTGTTACCACACCTGCTCCTGTCTCTTCAGCTACCACAGAGGTAGAATCTGATCCCTACGGCCAAGCAGCATCTGATCTGGTAGCAGGAACTAACTTGGAGGGAACAATTCAGCAAATTCTGGATATGGGTGGAGGTACTTGGGACAGGGATACTGTTGTACGTGCTCTTCGTGCTGCTTTCAACAACCCAGCGAGAGCTATTGACTATCTTTATTCTGGTATCCCTGAGCAACCTGAAGTTCCACCTGCAGCCCGTATTCCTGTGAGTGGGGAAGTTGCAAACCTTCCGGCACAACCTCCACAATCAGCACAACCAGCAGCCACTCCACCAAGCGGACCTAATGCCAATCCTTTAAACCTTTTTCCACAGGGCCTTCCGAACGTGGGTGCTGGTGCTGGTGCTGCAGGCAATCTTGATTTTCTTCGTGACAGCCAACAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTTCAAGAGTTAGGGAAACAAAATCCTAATCTTATGAGGCTAATTCAACAGCATCAGGCTGACTTCCTTCGCCTGATTAATGAACCTGTGGAAGGTGGAGAAGGGAACATATTGGGCGATGCAGCGGTGCCGCAGTCAATAAGTGTCACTCCTGAGGAGCGTGAAGCTATAGAGCGTCTTGAAGCAATGGGATTTGATCGAGCAATTGTATTGGAGGTTTTCTTTGCCTGCAACAAGAACGAAGAGTTGGCTGCCAACTACCTCTTAGACCACATGCATGAATTTGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

386

Amino Acids

40.8

Weight (kDa)

4.67

Isoelectric Point (pI)

50.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02540 AT3G02540 AT3G02540
fragaria_vesca	FvH4_4g27550 FvH4_4g27550
malus_domestica	MD13G1043000.v1.1 MD16G1043900.v1.1
prunus_persica	Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309600_v2.0.a1 Prupe.1G309600_v2.0.a1
pyrus_communis	pycom13g03780 pycom16g03810
rosa_chinensis	RchiOBHm_Chr4g0435391
rosa_multiflora	Rmu_co8381849.1_g000001 Rmu_co8396387.1_g000001 Rmu_sc0001940.1_g000019
rosa_roxburghii	Rroxscaffold_5G00376630
rosa_rugosa	Rorug04G0284600
rosa_samantha	Rh4AG340200 Rh4BG348700 Rh4CG363200 Rh4DG342800
rosa_wichuraiana	Rw4G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	391, 625
AatII	GACGTC	1 cut(s)	45
Acc36I	ACCTGC	2 cut(s)	391, 625
AccB1I	GGYRCC	2 cut(s)	283, 991
AciI	CCGC	4 cut(s)	362, 705, 989, 995
AclWI	GGATC	1 cut(s)	416
AcoI	YGGCCR	1 cut(s)	430
AcsI	RAATTY	2 cut(s)	486, 1145
AcuI	CTGAAG	2 cut(s)	381, 627
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	3 cut(s)	156, 508, 531
AfiI	CCNNNNNNNGG	4 cut(s)	638, 704, 755, 956
AgsI	TTSAA	4 cut(s)	553, 869, 911, 1046
AhlI	ACTAGT	1 cut(s)	95
AjuI	GAANNNNNNNTTGG	4 cut(s)	286, 318, 1094, 1126
AluBI	AGCT	6 cut(s)	204, 237, 401, 569, 827, 1031
AluI	AGCT	6 cut(s)	204, 237, 401, 569, 827, 1031
Alw21I	GWGCWC	3 cut(s)	239, 301, 538
Alw26I	GTCTC	1 cut(s)	397
Alw44I	GTGCAC	1 cut(s)	297
AlwI	GGATC	1 cut(s)	416
AlwNI	CAGNNNCTG	1 cut(s)	443
AoxI	GGCC	2 cut(s)	430, 742
ApaLI	GTGCAC	1 cut(s)	297
ApeKI	GCWGC	9 cut(s)	308, 437, 545, 620, 689, 773, 856, 986, 1115
ApoI	RAATTY	2 cut(s)	486, 1145
AseI	ATTAAT	1 cut(s)	942
AspS9I	GGNCC	2 cut(s)	707, 742
AsuHPI	GGTGA	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	707
AxyI	CCTNAGG	3 cut(s)	57, 336, 1017
BaeGI	GKGCMC	2 cut(s)	32, 301
BaeI	ACNNNNGTAYC	2 cut(s)	513, 546
BanI	GGYRCC	2 cut(s)	283, 991
BanII	GRGCYC	1 cut(s)	239
BarI	GAAGNNNNNNTAC	2 cut(s)	522, 554
Bbv12I	GWGCWC	3 cut(s)	239, 301, 538
BbvCI	CCTCAGC	1 cut(s)	355
BbvI	GCAGC	9 cut(s)	295, 449, 532, 632, 701, 760, 868, 998, 1102
BceAI	ACGGC	1 cut(s)	445
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciVI	GTATCC	2 cut(s)	514, 602
BcoDI	GTCTC	1 cut(s)	397
BcuI	ACTAGT	1 cut(s)	95
BfaI	CTAG	1 cut(s)	96
BfmI	CTRYAG	3 cut(s)	618, 774, 1032
BfuAI	ACCTGC	2 cut(s)	391, 625
BfuI	GTATCC	2 cut(s)	514, 602
BmcAI	AGTACT	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	707
BmgT120I	GGNCC	2 cut(s)	707, 742
BmiI	GGNNCC	3 cut(s)	285, 342, 993
BmsI	GCATC	5 cut(s)	123, 269, 449, 925, 973
Bpu10I	CCTNAGC	2 cut(s)	355, 597
BpuEI	CTTGAG	1 cut(s)	8
BsaAI	YACGTR	1 cut(s)	533
BsaBI	GATNNNNATC	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	42
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bsc4I	CCNNNNNNNGG	4 cut(s)	638, 704, 755, 956
Bse21I	CCTNAGG	3 cut(s)	57, 336, 1017
Bse3DI	GCAATG	1 cut(s)	1056
Bse8I	GATNNNNATC	1 cut(s)	114
BseGI	GGATG	1 cut(s)	184
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	4 cut(s)	638, 704, 755, 956
BseMI	GCAATG	1 cut(s)	1056
BseMII	CTCAG	5 cut(s)	48, 350, 369, 588, 1008
BseRI	GAGGAG	1 cut(s)	1034
BseSI	GKGCMC	2 cut(s)	32, 301
BseXI	GCAGC	9 cut(s)	295, 449, 532, 632, 701, 760, 868, 998, 1102
BseYI	CCCAGC	1 cut(s)	559
BsgI	GTGCAG	1 cut(s)	854
BshFI	GGCC	2 cut(s)	432, 744
BshNI	GGYRCC	2 cut(s)	283, 991
BsiHKAI	GWGCWC	3 cut(s)	239, 301, 538
BsiSI	CCGG	1 cut(s)	659
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	4 cut(s)	638, 704, 755, 956
BsmAI	GTCTC	1 cut(s)	397
BsmFI	GGGAC	1 cut(s)	527
BsnI	GGCC	2 cut(s)	432, 744
Bsp1286I	GDGCHC	4 cut(s)	32, 239, 301, 538
Bsp143I	GATC	3 cut(s)	421, 445, 1060
BspACI	CCGC	4 cut(s)	362, 705, 989, 995
BspANI	GGCC	2 cut(s)	432, 744
BspCNI	CTCAG	5 cut(s)	49, 349, 368, 589, 1009
BspLI	GGNNCC	3 cut(s)	285, 342, 993
BspMAI	CTGCAG	2 cut(s)	622, 778
BspMI	ACCTGC	2 cut(s)	391, 625
BspPI	GGATC	1 cut(s)	416
BspQI	GCTCTTC	1 cut(s)	543
BspT107I	GGYRCC	2 cut(s)	283, 991
BsrDI	GCAATG	1 cut(s)	1056
BssMI	GATC	3 cut(s)	421, 445, 1060
BssNI	GRCGYC	1 cut(s)	42
Bst4CI	ACNGT	3 cut(s)	67, 526, 810
Bst6I	CTCTTC	3 cut(s)	400, 543, 1101
BstACI	GRCGYC	1 cut(s)	42
BstAPI	GCANNNNNTGC	4 cut(s)	266, 305, 365, 862
BstBAI	YACGTR	1 cut(s)	533
BstC8I	GCNNGC	5 cut(s)	366, 778, 825, 837, 1093
BstDEI	CTNAG	7 cut(s)	57, 279, 336, 355, 597, 1017, 1129
BstENI	CCTNNNNNAGG	1 cut(s)	954
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	3 cut(s)	424, 448, 1063
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	3 cut(s)	421, 445, 1060
BstNSI	RCATGY	1 cut(s)	1141
BstSFI	CTRYAG	3 cut(s)	618, 774, 1032
BstSLI	GKGCMC	2 cut(s)	32, 301
BstV1I	GCAGC	9 cut(s)	295, 449, 532, 632, 701, 760, 868, 998, 1102
Bsu36I	CCTNAGG	3 cut(s)	57, 336, 1017
BsuI	GTATCC	2 cut(s)	514, 602
BsuRI	GGCC	2 cut(s)	432, 744
BtgZI	GCGATG	1 cut(s)	996
BtsCI	GGATG	1 cut(s)	184
BveI	ACCTGC	2 cut(s)	391, 625
Cac8I	GCNNGC	5 cut(s)	366, 778, 825, 837, 1093
CaiI	CAGNNNCTG	1 cut(s)	443
Cfr13I	GGNCC	2 cut(s)	707, 742
CseI	GACGC	1 cut(s)	1028
Csp6I	GTAC	3 cut(s)	155, 507, 530
CspCI	CAANNNNNGTGG	2 cut(s)	834, 869
CviAII	CATG	2 cut(s)	1138, 1142
CviQI	GTAC	3 cut(s)	155, 507, 530
DdeI	CTNAG	7 cut(s)	57, 279, 336, 355, 597, 1017, 1129
DpnI	GATC	3 cut(s)	423, 447, 1062
DpnII	GATC	3 cut(s)	421, 445, 1060
DraI	TTTAAA	1 cut(s)	726
EaeI	YGGCCR	1 cut(s)	430
Eam1104I	CTCTTC	3 cut(s)	400, 543, 1101
EarI	CTCTTC	3 cut(s)	400, 543, 1101
Ecl136II	GAGCTC	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	707
Eco53kI	GAGCTC	1 cut(s)	237
Eco57I	CTGAAG	2 cut(s)	381, 627
Eco81I	CCTNAGG	3 cut(s)	57, 336, 1017
EcoICRI	GAGCTC	1 cut(s)	237
EcoNI	CCTNNNNNAGG	1 cut(s)	954
EcoO109I	RGGNCCY	1 cut(s)	742
EcoT22I	ATGCAT	1 cut(s)	1143
EcoT38I	GRGCYC	1 cut(s)	239
FaeI	CATG	2 cut(s)	1141, 1145
FaiI	YATR	9 cut(s)	115, 497, 830, 863, 899, 974, 1034, 1139, 1143
FalI	AAGNNNNNCTT	2 cut(s)	286, 318
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	2 cut(s)	1137, 1141
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	1 cut(s)	239
FspBI	CTAG	1 cut(s)	96
GsaI	CCCAGC	1 cut(s)	563
HaeIII	GGCC	2 cut(s)	432, 744
HapII	CCGG	1 cut(s)	659
HgaI	GACGC	1 cut(s)	1028
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	1141, 1145
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HinfI	GANTC	2 cut(s)	19, 416
HpaII	CCGG	1 cut(s)	659
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	2 cut(s)	222, 299
Hpy188I	TCNGA	4 cut(s)	109, 421, 445, 750
Hpy188III	TCNNGA	7 cut(s)	16, 491, 785, 797, 869, 1016, 1043
Hpy8I	GTNNAC	2 cut(s)	222, 299
Hpy99I	CGWCG	2 cut(s)	44, 47
HpyAV	CCTTC	7 cut(s)	242, 312, 665, 755, 941, 950, 959
HpyCH4III	ACNGT	3 cut(s)	67, 526, 810
HpyCH4IV	ACGT	3 cut(s)	42, 532, 753
HpyF3I	CTNAG	7 cut(s)	57, 279, 336, 355, 597, 1017, 1129
HpySE526I	ACGT	3 cut(s)	42, 532, 753
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	1141, 1145
Kzo9I	GATC	3 cut(s)	421, 445, 1060
LguI	GCTCTTC	1 cut(s)	543
LmnI	GCTCC	4 cut(s)	316, 346, 391, 1021
Lsp1109I	GCAGC	9 cut(s)	295, 449, 532, 632, 701, 760, 868, 998, 1102
LweI	GCATC	5 cut(s)	123, 269, 449, 925, 973
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	3 cut(s)	42, 532, 753
MaeIII	GTNAC	3 cut(s)	373, 797, 1009
MalI	GATC	3 cut(s)	423, 447, 1062
MboI	GATC	3 cut(s)	421, 445, 1060
MboII	GAAGA	6 cut(s)	16, 91, 387, 530, 785, 1118
MfeI	CAATTG	1 cut(s)	1068
MhlI	GDGCHC	4 cut(s)	32, 239, 301, 538
MluCI	AATT	5 cut(s)	477, 486, 906, 1068, 1145
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	338
Mph1103I	ATGCAT	1 cut(s)	1143
MseI	TTAA	4 cut(s)	159, 326, 725, 942
MslI	CAYNNNNRTG	1 cut(s)	1140
MspA1I	CMGCKG	1 cut(s)	989
MspI	CCGG	1 cut(s)	659
MunI	CAATTG	1 cut(s)	1068
NdeII	GATC	3 cut(s)	421, 445, 1060
NlaIII	CATG	2 cut(s)	1141, 1145
NlaIV	GGNNCC	3 cut(s)	285, 342, 993
NmuCI	GTSAC	2 cut(s)	797, 1009
NsiI	ATGCAT	1 cut(s)	1143
NspI	RCATGY	1 cut(s)	1141
PaqCI	CACCTGC	2 cut(s)	391, 625
PciSI	GCTCTTC	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	1 cut(s)	538
PfeI	GAWTC	1 cut(s)	416
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Ppu21I	YACGTR	1 cut(s)	533
PshBI	ATTAAT	1 cut(s)	942
Psp124BI	GAGCTC	1 cut(s)	239
PspFI	CCCAGC	1 cut(s)	559
PspN4I	GGNNCC	3 cut(s)	285, 342, 993
PspPI	GGNCC	2 cut(s)	707, 742
PstI	CTGCAG	2 cut(s)	622, 778
PstNI	CAGNNNCTG	1 cut(s)	443
RsaI	GTAC	3 cut(s)	156, 508, 531
RsaNI	GTAC	3 cut(s)	155, 507, 530
RseI	CAYNNNNRTG	1 cut(s)	1140
SacI	GAGCTC	1 cut(s)	239
SapI	GCTCTTC	1 cut(s)	543
SaqAI	TTAA	4 cut(s)	159, 326, 725, 942
Sau3AI	GATC	3 cut(s)	421, 445, 1060
Sau96I	GGNCC	2 cut(s)	707, 742
ScaI	AGTACT	1 cut(s)	156
SchI	GAGTC	1 cut(s)	13
SduI	GDGCHC	4 cut(s)	32, 239, 301, 538
SfaNI	GCATC	5 cut(s)	123, 269, 449, 925, 973
SfcI	CTRYAG	3 cut(s)	618, 774, 1032
SinI	GGWCC	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	1140
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SpeI	ACTAGT	1 cut(s)	95
Sse9I	AATT	5 cut(s)	477, 486, 906, 1068, 1145
SsiI	CCGC	4 cut(s)	362, 705, 989, 995
SspI	AATATT	1 cut(s)	852
SspMI	CTAG	1 cut(s)	96
SstI	GAGCTC	1 cut(s)	239
TaaI	ACNGT	3 cut(s)	67, 526, 810
TaiI	ACGT	3 cut(s)	45, 535, 756
TaqI	TCGA	3 cut(s)	39, 45, 1063
TasI	AATT	5 cut(s)	477, 486, 906, 1068, 1145
TatI	WGTACW	1 cut(s)	154
TauI	GCSGC	1 cut(s)	997
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	4 cut(s)	159, 326, 725, 942
Tru9I	TTAA	4 cut(s)	159, 326, 725, 942
TseFI	GTSAC	2 cut(s)	797, 1009
TseI	GCWGC	9 cut(s)	308, 437, 545, 620, 689, 773, 856, 986, 1115
Tsp45I	GTSAC	2 cut(s)	797, 1009
TspDTI	ATGAA	5 cut(s)	17, 131, 195, 960, 1158
VneI	GTGCAC	1 cut(s)	297
VpaK11BI	GGWCC	1 cut(s)	707
VspI	ATTAAT	1 cut(s)	942
XagI	CCTNNNNNAGG	1 cut(s)	954
XapI	RAATTY	2 cut(s)	486, 1145
XceI	RCATGY	1 cut(s)	1141
XspI	CTAG	1 cut(s)	96
ZraI	GACGTC	1 cut(s)	43
ZrmI	AGTACT	1 cut(s)	156
Zsp2I	ATGCAT	1 cut(s)	1143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.