Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8381849.1

Orthogroup ID

OG0005958

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 654

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8381849.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atgtatgtgtatattttggcacaggcaccacagcccagtacaccttcagctgctccaactgcaacatccacgacacctcaggctcctgtctcaacatcagcaccgccagcatctgttaccacgccagctcccgtctcttcggccacaacagatttagattcctatggccaagcagcatctgatctagtagctggaaacaacttggagggaacaattcagcaaattctggatatgggtggaggaacctgggacagggatactgttgtacgtgctcttcgtgctgcgttcaacaacccagctagagcaattgattacttatattca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

108

Amino Acids

11.12

Weight (kDa)

4.14

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02540 AT3G02540 AT3G02540
fragaria_vesca	FvH4_4g27550 FvH4_4g27550
malus_domestica	MD13G1043000.v1.1 MD16G1043900.v1.1
prunus_persica	Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309600_v2.0.a1 Prupe.1G309600_v2.0.a1
pyrus_communis	pycom13g03780 pycom16g03810
rosa_chinensis	RchiOBHm_Chr4g0435391
rosa_multiflora	Rmu_co8381849.1_g000001 Rmu_co8396387.1_g000001 Rmu_sc0001940.1_g000019
rosa_roxburghii	Rroxscaffold_5G00376630
rosa_rugosa	Rorug04G0284600
rosa_samantha	Rh4AG340200 Rh4BG348700 Rh4CG363200 Rh4DG342800
rosa_wichuraiana	Rw4G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AciI	CCGC	1 cut(s)	104
AcoI	YGGCCR	2 cut(s)	141, 166
AcsI	RAATTY	1 cut(s)	222
AcuI	CTGAAG	1 cut(s)	30
AfaI	GTAC	2 cut(s)	40, 267
AfiI	CCNNNNNNNGG	1 cut(s)	252
AgsI	TTSAA	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	245
AluBI	AGCT	4 cut(s)	50, 128, 191, 299
AluI	AGCT	4 cut(s)	50, 128, 191, 299
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	2 cut(s)	94, 139
AlwNI	CAGNNNCTG	2 cut(s)	113, 179
AoxI	GGCC	2 cut(s)	141, 166
ApeKI	GCWGC	3 cut(s)	50, 173, 281
ApoI	RAATTY	1 cut(s)	222
AxyI	CCTNAGG	1 cut(s)	78
BaeI	ACNNNNGTAYC	2 cut(s)	249, 282
BalI	TGGCCA	1 cut(s)	168
BanI	GGYRCC	1 cut(s)	25
BarI	GAAGNNNNNNTAC	2 cut(s)	258, 290
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	3 cut(s)	37, 185, 268
BciT130I	CCWGG	1 cut(s)	247
BciVI	GTATCC	1 cut(s)	250
BcoDI	GTCTC	2 cut(s)	94, 139
BfaI	CTAG	2 cut(s)	185, 300
BfuI	GTATCC	1 cut(s)	250
BisI	GCNGC	3 cut(s)	51, 174, 282
BlsI	GCNGC	3 cut(s)	52, 175, 283
Bme1390I	CCNGG	1 cut(s)	247
BmiI	GGNNCC	3 cut(s)	27, 84, 244
BmrFI	CCNGG	1 cut(s)	247
BmrI	ACTGGG	1 cut(s)	30
BmsI	GCATC	2 cut(s)	119, 185
BmuI	ACTGGG	1 cut(s)	30
BsaAI	YACGTR	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	246
BsaXI	ACNNNNNCTCC	2 cut(s)	112, 142
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse1I	ACTGG	1 cut(s)	36
Bse21I	CCTNAGG	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	65
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	36
BseXI	GCAGC	3 cut(s)	37, 185, 268
BseYI	CCCAGC	1 cut(s)	295
BshFI	GGCC	2 cut(s)	143, 168
BshNI	GGYRCC	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	274
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	2 cut(s)	94, 139
BsmBI	CGTCTC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	2 cut(s)	143, 168
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	2 cut(s)	143, 168
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	3 cut(s)	27, 84, 244
BspQI	GCTCTTC	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	247
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	2 cut(s)	142, 279
BstBAI	YACGTR	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	108, 126
BstDEI	CTNAG	1 cut(s)	78
BstENI	CCTNNNNNAGG	1 cut(s)	250
BstF5I	GGATG	1 cut(s)	65
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	2 cut(s)	94, 139
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 107, 278
BstNI	CCWGG	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	245
BstV1I	GCAGC	3 cut(s)	37, 185, 268
Bsu36I	CCTNAGG	1 cut(s)	78
BsuI	GTATCC	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	143, 168
BtsCI	GGATG	1 cut(s)	65
Cac8I	GCNNGC	2 cut(s)	108, 126
CaiI	CAGNNNCTG	2 cut(s)	113, 179
Csp6I	GTAC	2 cut(s)	39, 266
CviJI	RGCY	8 cut(s)	34, 50, 83, 128, 143, 168, 191, 299
CviKI_1	RGCY	8 cut(s)	34, 50, 83, 128, 143, 168, 191, 299
CviQI	GTAC	2 cut(s)	39, 266
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
EaeI	YGGCCR	2 cut(s)	141, 166
Eam1104I	CTCTTC	2 cut(s)	142, 279
EarI	CTCTTC	2 cut(s)	142, 279
Eco57I	CTGAAG	1 cut(s)	30
Eco81I	CCTNAGG	1 cut(s)	78
EcoNI	CCTNNNNNAGG	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	245
Esp3I	CGTCTC	1 cut(s)	139
FaiI	YATR	5 cut(s)	6, 12, 165, 233, 319
FaqI	GGGAC	1 cut(s)	263
Fnu4HI	GCNGC	3 cut(s)	51, 174, 282
FokI	GGATG	1 cut(s)	52
Fsp4HI	GCNGC	3 cut(s)	51, 174, 282
FspBI	CTAG	2 cut(s)	185, 300
GluI	GCNGC	3 cut(s)	51, 174, 282
GsaI	CCCAGC	1 cut(s)	299
HaeIII	GGCC	2 cut(s)	143, 168
HinfI	GANTC	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	54
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 107, 278
HpyF3I	CTNAG	1 cut(s)	78
HpySE526I	ACGT	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	181
LguI	GCTCTTC	1 cut(s)	279
LmnI	GCTCC	3 cut(s)	58, 88, 133
Lsp1109I	GCAGC	3 cut(s)	37, 185, 268
LweI	GCATC	2 cut(s)	119, 185
MaeI	CTAG	2 cut(s)	185, 300
MaeII	ACGT	1 cut(s)	268
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	2 cut(s)	129, 266
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	274
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	3 cut(s)	213, 222, 306
MluNI	TGGCCA	1 cut(s)	168
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	3 cut(s)	87, 199, 233
Mox20I	TGGCCA	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	168
Msp20I	TGGCCA	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	247
MunI	CAATTG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	247
MwoI	GCNNNNNNNGC	3 cut(s)	59, 107, 278
NdeII	GATC	1 cut(s)	181
NlaIV	GGNNCC	3 cut(s)	27, 84, 244
PciSI	GCTCTTC	1 cut(s)	279
PcsI	WCGNNNNNNNCGW	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	3 cut(s)	52, 175, 283
Ppu21I	YACGTR	1 cut(s)	269
Psp6I	CCWGG	1 cut(s)	245
PspFI	CCCAGC	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	245
PspN4I	GGNNCC	3 cut(s)	27, 84, 244
PstNI	CAGNNNCTG	2 cut(s)	113, 179
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	2 cut(s)	40, 267
RsaNI	GTAC	2 cut(s)	39, 266
SapI	GCTCTTC	1 cut(s)	279
SatI	GCNGC	3 cut(s)	51, 174, 282
Sau3AI	GATC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	247
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	8 cut(s)	46, 52, 79, 130, 193, 248, 271, 301
SfaNI	GCATC	2 cut(s)	119, 185
Sse9I	AATT	3 cut(s)	213, 222, 306
SsiI	CCGC	1 cut(s)	104
SspMI	CTAG	2 cut(s)	185, 300
StyD4I	CCNGG	1 cut(s)	245
TaaI	ACNGT	1 cut(s)	262
TaiI	ACGT	1 cut(s)	271
TasI	AATT	3 cut(s)	213, 222, 306
TatI	WGTACW	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	158
TseI	GCWGC	3 cut(s)	50, 173, 281
XagI	CCTNNNNNAGG	1 cut(s)	250
XapI	RAATTY	1 cut(s)	222
XspI	CTAG	2 cut(s)	185, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.