Rroxscaffold_5G00376630

Ubiquitin receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0005958
Physical Location & Seq
Forward (+)
57302294 .. 57306715
4422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00376630.1

Sequence Viewer

Length: 1170 bp
ATGAAGATCTTCGTGAAGACTCTCAAGGGGACTCACTTCGAAATCGAAGTCAAGCCTCAGGACTCGGTTGCTGATGTGAAGAAGTCGATAGAAACTTCTCAAGGTTCGGATGTATATCCTGCTACGCAACAGATGCTAATCCATCAAGGAAAAGTACTTAAGGATGGGACAACATTGGAAGAAAACAAAGTTGTGGAAAATAGCTTTGTTGTGATAATGTTGACAAAGAGTAAGAGCTCATCCAGTGAGGGCTCAAGTGCGTCAACTGCAACTACGACTAAGGCACCACAGCCCAGTACACCTTCAGCTACTCCAACTGCAACATCCACGACACCTCAGGCTCCTGTCTCAACATCAGCACCGCCGGCATCTGTTACCACGCCAGCTCCCGTCTCTTCGGCCACAACAGACAGTTTAGATTCCTATGGCCAAGCAGCATCTGATCTAGTAGCTGGAAACAACTTGGAGGGAACAATTCAGCAAATTCTGGATATGGGTGGAGGAACCTGGGACAGGGATACTGCTGTACGTGCTCTTCGTGCTGCATTCAACAACCCAGCTAGAGCAATTGATTACTTATGTTCAGGTATCCCTGAGCAACCTGAAGCTCCTGTAGCTCGTATCCCTGTGAGTGGCGATGCTGCAAACCTTCCGGCACAACCTCCTCAATCAGCACAGCCAGCATCCACTCCTTCAACAGGACCTAACGCCAATCCTTTAGACCTCTTTCCACAGGGCCTTCCGAACCTAGGTGCCGGAGCTGGAGCTGGTGTGGGTGCGGGTGCGGGTAATCTTGATTTTCTGCGTGACAGCCCACAGTTCCAAGCCTTGCGAGCTATGGTGCAAGCTAATCCACAAATATTGCAGCCTATGCTTCAAGAGTTGGGAAAACAAAATCCTCAGCTTGTAAGGTTAATTCAACAACATCAGGCTGACTTCCTTCGCCTAATTAATGAACCTGTCGAAGCAGAAGGGGATGTGTTGGGACAACTGGATGCAGCAATGCCACAAGCAATAACTGTCACTCCCGAGGAGCGTGAAGCCATAGAACGTCTTGAAGCAATGGGCTTTGATAGAGCACTTGTTTTGGAGGTGTTCGTTGCCTGCAACAGGAATGAAGAATTGGCTGCAAACTACCTCCTAGATCACATGCACGAGTTTGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03420 ko04141 map03420 map04141
Pfam Domains
Protein Families
UBA XPC-binding ubiquitin

Protein Analysis

389

Amino Acids

41.05

Weight (kDa)

4.64

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 73 2.3e-06 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 76 1.4e-17 Ubiquitin family
UBA PF00627 158 - 193 3.3e-09 UBA/TS-N domain
XPC-binding PF09280 265 - 320 4e-24 XPC-binding domain
UBA PF00627 345 - 380 8e-10 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 283, 752
AciI CCGC 3 cut(s) 362, 779, 785
AcoI YGGCCR 2 cut(s) 399, 427
AcsI RAATTY 1 cut(s) 483
AcuI CTGAAG 2 cut(s) 288, 624
AfaI GTAC 3 cut(s) 156, 298, 528
AfiI CCNNNNNNNGG 5 cut(s) 513, 632, 698, 749, 1110
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 5 cut(s) 550, 696, 878, 920, 1058
AjnI CCWGG 1 cut(s) 506
AjuI GAANNNNNNNTTGG 2 cut(s) 1106, 1138
Alw21I GWGCWC 3 cut(s) 239, 535, 1081
Alw26I GTCTC 2 cut(s) 352, 397
AlwNI CAGNNNCTG 1 cut(s) 440
Ama87I CYCGRG 1 cut(s) 1028
AoxI GGCC 3 cut(s) 399, 427, 736
ApeKI GCWGC 6 cut(s) 434, 542, 641, 865, 998, 1127
ApoI RAATTY 1 cut(s) 483
ArsI GACNNNNNNTTYG 2 cut(s) 33, 65
AseI ATTAAT 1 cut(s) 951
Asp700I GAANNNNTTC 1 cut(s) 8
AspA2I CCTAGG 1 cut(s) 748
AspS9I GGNCC 2 cut(s) 701, 736
AsuII TTCGAA 1 cut(s) 39
AvaI CYCGRG 1 cut(s) 1028
AvaII GGWCC 1 cut(s) 701
AvrII CCTAGG 1 cut(s) 748
AxyI CCTNAGG 2 cut(s) 57, 336
BaeI ACNNNNGTAYC 2 cut(s) 510, 543
BalI TGGCCA 1 cut(s) 429
BanI GGYRCC 2 cut(s) 283, 752
BanII GRGCYC 2 cut(s) 239, 254
BarI GAAGNNNNNNTAC 2 cut(s) 519, 551
BauI CACGAG 1 cut(s) 1154
BbsI GAAGAC 1 cut(s) 23
Bbv12I GWGCWC 3 cut(s) 239, 535, 1081
BbvCI CCTCAGC 1 cut(s) 900
BbvI GCAGC 6 cut(s) 446, 529, 628, 877, 1010, 1114
BccI CCATC 2 cut(s) 150, 158
BciT130I CCWGG 1 cut(s) 508
BciVI GTATCC 3 cut(s) 511, 599, 632
BcoDI GTCTC 2 cut(s) 352, 397
BfaI CTAG 4 cut(s) 446, 561, 749, 1142
BfmI CTRYAG 1 cut(s) 612
BfrI CTTAAG 1 cut(s) 158
BfuI GTATCC 3 cut(s) 511, 599, 632
BglII AGATCT 1 cut(s) 6
BisI GCNGC 6 cut(s) 435, 543, 642, 866, 999, 1128
BlnI CCTAGG 1 cut(s) 748
BlsI GCNGC 6 cut(s) 436, 544, 643, 867, 1000, 1129
BmcAI AGTACT 1 cut(s) 156
Bme1390I CCNGG 1 cut(s) 508
Bme18I GGWCC 1 cut(s) 701
BmeT110I CYCGRG 1 cut(s) 1028
BmgT120I GGNCC 2 cut(s) 701, 736
BmiI GGNNCC 4 cut(s) 285, 342, 505, 754
BmrFI CCNGG 1 cut(s) 508
BmrI ACTGGG 1 cut(s) 288
BmsI GCATC 6 cut(s) 123, 377, 446, 628, 692, 985
BmuI ACTGGG 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 23
BpmI CTGGAG 1 cut(s) 783
Bpu10I CCTNAGC 2 cut(s) 594, 900
Bpu14I TTCGAA 1 cut(s) 39
BpuEI CTTGAG 3 cut(s) 8, 84, 238
BsaAI YACGTR 1 cut(s) 530
BsaBI GATNNNNATC 2 cut(s) 114, 137
BsaJI CCNNGG 3 cut(s) 507, 748, 1029
BsaXI ACNNNNNCTCC 6 cut(s) 370, 400, 756, 786, 1009, 1039
Bsc4I CCNNNNNNNGG 5 cut(s) 513, 632, 698, 749, 1110
Bse118I RCCGGY 1 cut(s) 364
Bse1I ACTGG 3 cut(s) 243, 294, 996
Bse21I CCTNAGG 2 cut(s) 57, 336
Bse3DI GCAATG 2 cut(s) 1008, 1068
Bse8I GATNNNNATC 2 cut(s) 114, 137
BseBI CCWGG 1 cut(s) 508
BseDI CCNNGG 3 cut(s) 507, 748, 1029
BseGI GGATG 7 cut(s) 115, 169, 239, 323, 683, 982, 1000
BseJI GATNNNNATC 2 cut(s) 114, 137
BseLI CCNNNNNNNGG 5 cut(s) 513, 632, 698, 749, 1110
BseMI GCAATG 2 cut(s) 1008, 1068
BseMII CTCAG 4 cut(s) 71, 350, 585, 914
BseNI ACTGG 3 cut(s) 243, 294, 996
BseRI GAGGAG 2 cut(s) 654, 1046
BseXI GCAGC 6 cut(s) 446, 529, 628, 877, 1010, 1114
BseYI CCCAGC 1 cut(s) 556
BshFI GGCC 3 cut(s) 401, 429, 738
BshNI GGYRCC 2 cut(s) 283, 752
BsiHKAI GWGCWC 3 cut(s) 239, 535, 1081
BsiHKCI CYCGRG 1 cut(s) 1028
BsiSI CCGG 3 cut(s) 365, 653, 756
BslFI GGGAC 4 cut(s) 43, 181, 524, 999
BslI CCNNNNNNNGG 5 cut(s) 513, 632, 698, 749, 1110
BsmAI GTCTC 2 cut(s) 352, 397
BsmBI CGTCTC 1 cut(s) 397
BsmFI GGGAC 4 cut(s) 43, 181, 524, 999
BsmI GAATGC 1 cut(s) 545
BsnI GGCC 3 cut(s) 401, 429, 738
BsoBI CYCGRG 1 cut(s) 1028
Bsp119I TTCGAA 1 cut(s) 39
Bsp1286I GDGCHC 4 cut(s) 239, 254, 535, 1081
Bsp143I GATC 3 cut(s) 6, 442, 1144
BspACI CCGC 3 cut(s) 362, 779, 785
BspANI GGCC 3 cut(s) 401, 429, 738
BspCNI CTCAG 4 cut(s) 70, 349, 586, 913
BspLI GGNNCC 4 cut(s) 285, 342, 505, 754
BspQI GCTCTTC 1 cut(s) 540
BspT104I TTCGAA 1 cut(s) 39
BspT107I GGYRCC 2 cut(s) 283, 752
BspTI CTTAAG 1 cut(s) 158
BsrDI GCAATG 2 cut(s) 1008, 1068
BsrFI RCCGGY 1 cut(s) 364
BsrI ACTGG 3 cut(s) 243, 294, 996
BssAI RCCGGY 1 cut(s) 364
BssECI CCNNGG 3 cut(s) 507, 748, 1029
BssMI GATC 3 cut(s) 6, 442, 1144
BssSI CACGAG 1 cut(s) 1154
BssT1I CCWWGG 1 cut(s) 748
Bst2BI CACGAG 1 cut(s) 1154
Bst2UI CCWGG 1 cut(s) 508
Bst4CI ACNGT 3 cut(s) 413, 819, 1021
Bst6I CTCTTC 2 cut(s) 400, 540
BstAFI CTTAAG 1 cut(s) 158
BstAPI GCANNNNNTGC 2 cut(s) 133, 871
BstBAI YACGTR 1 cut(s) 530
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 6 cut(s) 366, 384, 681, 834, 846, 1105
BstDEI CTNAG 5 cut(s) 57, 279, 336, 594, 900
BstENI CCTNNNNNAGG 3 cut(s) 511, 696, 1108
BstF5I GGATG 7 cut(s) 115, 169, 239, 323, 683, 982, 1000
BstKTI GATC 3 cut(s) 9, 445, 1147
BstMAI GTCTC 2 cut(s) 352, 397
BstMBI GATC 3 cut(s) 6, 442, 1144
BstMWI GCNNNNNNNGC 9 cut(s) 133, 266, 365, 530, 539, 614, 680, 833, 871
BstNI CCWGG 1 cut(s) 508
BstNSI RCATGY 1 cut(s) 1153
BstSCI CCNGG 1 cut(s) 506
BstSFI CTRYAG 1 cut(s) 612
BstV1I GCAGC 6 cut(s) 446, 529, 628, 877, 1010, 1114
BstV2I GAAGAC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
Bsu36I CCTNAGG 2 cut(s) 57, 336
BsuI GTATCC 3 cut(s) 511, 599, 632
BsuRI GGCC 3 cut(s) 401, 429, 738
BtgZI GCGATG 1 cut(s) 651
BtsCI GGATG 7 cut(s) 115, 169, 239, 323, 683, 982, 1000
BtsIMutI CAGTG 1 cut(s) 250
Cac8I GCNNGC 6 cut(s) 366, 384, 681, 834, 846, 1105
CaiI CAGNNNCTG 1 cut(s) 440
Cfr10I RCCGGY 1 cut(s) 364
Cfr13I GGNCC 2 cut(s) 701, 736
CseI GACGC 1 cut(s) 249
Csp6I GTAC 3 cut(s) 155, 297, 527
CspCI CAANNNNNGTGG 2 cut(s) 843, 878
CviAII CATG 1 cut(s) 1150
CviQI GTAC 3 cut(s) 155, 297, 527
DdeI CTNAG 5 cut(s) 57, 279, 336, 594, 900
DpnI GATC 3 cut(s) 8, 444, 1146
DpnII GATC 3 cut(s) 6, 442, 1144
EaeI YGGCCR 2 cut(s) 399, 427
Eam1104I CTCTTC 2 cut(s) 400, 540
EarI CTCTTC 2 cut(s) 400, 540
Ecl136II GAGCTC 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 748
Eco24I GRGCYC 2 cut(s) 239, 254
Eco47I GGWCC 1 cut(s) 701
Eco53kI GAGCTC 1 cut(s) 237
Eco57I CTGAAG 2 cut(s) 288, 624
Eco81I CCTNAGG 2 cut(s) 57, 336
Eco88I CYCGRG 1 cut(s) 1028
EcoICRI GAGCTC 1 cut(s) 237
EcoNI CCTNNNNNAGG 3 cut(s) 511, 696, 1108
EcoO109I RGGNCCY 2 cut(s) 701, 736
EcoRII CCWGG 1 cut(s) 506
EcoT14I CCWWGG 1 cut(s) 748
EcoT38I GRGCYC 2 cut(s) 239, 254
ErhI CCWWGG 1 cut(s) 748
Esp3I CGTCTC 1 cut(s) 397
FaeI CATG 1 cut(s) 1153
FaiI YATR 8 cut(s) 115, 426, 494, 580, 839, 872, 1046, 1151
FaqI GGGAC 4 cut(s) 43, 181, 524, 999
FatI CATG 1 cut(s) 1149
FauI CCCGC 2 cut(s) 772, 778
Fnu4HI GCNGC 6 cut(s) 435, 543, 642, 866, 999, 1128
FokI GGATG 7 cut(s) 122, 176, 226, 310, 670, 989, 1007
FriOI GRGCYC 2 cut(s) 239, 254
Fsp4HI GCNGC 6 cut(s) 435, 543, 642, 866, 999, 1128
FspBI CTAG 4 cut(s) 446, 561, 749, 1142
GluI GCNGC 6 cut(s) 435, 543, 642, 866, 999, 1128
GsaI CCCAGC 1 cut(s) 560
GsuI CTGGAG 1 cut(s) 783
HaeIII GGCC 3 cut(s) 401, 429, 738
HapII CCGG 3 cut(s) 365, 653, 756
HgaI GACGC 1 cut(s) 249
Hin1II CATG 1 cut(s) 1153
HincII GTYRAC 2 cut(s) 222, 264
HindII GTYRAC 2 cut(s) 222, 264
HinfI GANTC 4 cut(s) 19, 31, 62, 419
HpaII CCGG 3 cut(s) 365, 653, 756
Hpy166II GTNNAC 3 cut(s) 222, 264, 299
Hpy188I TCNGA 3 cut(s) 109, 442, 744
Hpy188III TCNNGA 7 cut(s) 13, 59, 488, 794, 878, 1028, 1055
Hpy8I GTNNAC 3 cut(s) 222, 264, 299
HpyAV CCTTC 6 cut(s) 312, 659, 702, 749, 950, 965
HpyCH4III ACNGT 3 cut(s) 413, 819, 1021
HpyCH4IV ACGT 2 cut(s) 529, 1051
HpyF10VI GCNNNNNNNGC 9 cut(s) 133, 266, 365, 530, 539, 614, 680, 833, 871
HpyF3I CTNAG 5 cut(s) 57, 279, 336, 594, 900
HpySE526I ACGT 2 cut(s) 529, 1051
Hsp92II CATG 1 cut(s) 1153
KroI GCCGGC 1 cut(s) 364
KroNI GCCGGC 1 cut(s) 366
Kzo9I GATC 3 cut(s) 6, 442, 1144
LguI GCTCTTC 1 cut(s) 540
LmnI GCTCC 6 cut(s) 346, 391, 613, 758, 764, 1033
Lsp1109I GCAGC 6 cut(s) 446, 529, 628, 877, 1010, 1114
LweI GCATC 6 cut(s) 123, 377, 446, 628, 692, 985
MaeI CTAG 4 cut(s) 446, 561, 749, 1142
MaeII ACGT 2 cut(s) 529, 1051
MaeIII GTNAC 3 cut(s) 373, 806, 1021
MalI GATC 3 cut(s) 8, 444, 1146
MboI GATC 3 cut(s) 6, 442, 1144
MboII GAAGA 7 cut(s) 16, 28, 91, 191, 387, 527, 1130
MfeI CAATTG 1 cut(s) 567
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 4 cut(s) 239, 254, 535, 1081
MlsI TGGCCA 1 cut(s) 429
MluCI AATT 6 cut(s) 474, 483, 567, 915, 948, 1121
MluNI TGGCCA 1 cut(s) 429
MlyI GAGTC 3 cut(s) 13, 25, 56
MmeI TCCRAC 1 cut(s) 338
Mox20I TGGCCA 1 cut(s) 429
MroNI GCCGGC 1 cut(s) 364
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 429
MseI TTAA 3 cut(s) 159, 914, 951
Msp20I TGGCCA 1 cut(s) 429
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 3 cut(s) 365, 653, 756
MspR9I CCNGG 1 cut(s) 508
MunI CAATTG 1 cut(s) 567
Mva1269I GAATGC 1 cut(s) 545
MvaI CCWGG 1 cut(s) 508
MwoI GCNNNNNNNGC 9 cut(s) 133, 266, 365, 530, 539, 614, 680, 833, 871
NaeI GCCGGC 1 cut(s) 366
NdeII GATC 3 cut(s) 6, 442, 1144
NgoMIV GCCGGC 1 cut(s) 364
NlaIII CATG 1 cut(s) 1153
NlaIV GGNNCC 4 cut(s) 285, 342, 505, 754
NmuCI GTSAC 2 cut(s) 806, 1021
NspI RCATGY 1 cut(s) 1153
NspV TTCGAA 1 cut(s) 39
PciSI GCTCTTC 1 cut(s) 540
PcsI WCGNNNNNNNCGW 1 cut(s) 535
PctI GAATGC 1 cut(s) 545
PdiI GCCGGC 1 cut(s) 366
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 419
PkrI GCNGC 6 cut(s) 436, 544, 643, 867, 1000, 1129
PleI GAGTC 3 cut(s) 13, 25, 56
PpsI GAGTC 3 cut(s) 13, 25, 56
Ppu21I YACGTR 1 cut(s) 530
PpuMI RGGWCCY 1 cut(s) 701
PshBI ATTAAT 1 cut(s) 951
Psp124BI GAGCTC 1 cut(s) 239
Psp5II RGGWCCY 1 cut(s) 701
Psp6I CCWGG 1 cut(s) 506
PspFI CCCAGC 1 cut(s) 556
PspGI CCWGG 1 cut(s) 506
PspN4I GGNNCC 4 cut(s) 285, 342, 505, 754
PspPI GGNCC 2 cut(s) 701, 736
PspPPI RGGWCCY 1 cut(s) 701
PstNI CAGNNNCTG 1 cut(s) 440
PsuI RGATCY 1 cut(s) 6
RsaI GTAC 3 cut(s) 156, 298, 528
RsaNI GTAC 3 cut(s) 155, 297, 527
SacI GAGCTC 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 540
SaqAI TTAA 3 cut(s) 159, 914, 951
SatI GCNGC 6 cut(s) 435, 543, 642, 866, 999, 1128
Sau3AI GATC 3 cut(s) 6, 442, 1144
Sau96I GGNCC 2 cut(s) 701, 736
ScaI AGTACT 1 cut(s) 156
SchI GAGTC 3 cut(s) 13, 25, 56
ScrFI CCNGG 1 cut(s) 508
SduI GDGCHC 4 cut(s) 239, 254, 535, 1081
SfaNI GCATC 6 cut(s) 123, 377, 446, 628, 692, 985
SfcI CTRYAG 1 cut(s) 612
SfuI TTCGAA 1 cut(s) 39
SinI GGWCC 1 cut(s) 701
SmlI CTYRAG 4 cut(s) 23, 99, 158, 253
SmoI CTYRAG 4 cut(s) 23, 99, 158, 253
Sse9I AATT 6 cut(s) 474, 483, 567, 915, 948, 1121
SsiI CCGC 3 cut(s) 362, 779, 785
SspI AATATT 1 cut(s) 861
SspMI CTAG 4 cut(s) 446, 561, 749, 1142
SstI GAGCTC 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 506
StyI CCWWGG 1 cut(s) 748
TaaI ACNGT 3 cut(s) 413, 819, 1021
TaiI ACGT 2 cut(s) 532, 1054
TaqI TCGA 4 cut(s) 39, 45, 86, 963
TasI AATT 6 cut(s) 474, 483, 567, 915, 948, 1121
TatI WGTACW 2 cut(s) 154, 296
TfiI GAWTC 1 cut(s) 419
Tru1I TTAA 3 cut(s) 159, 914, 951
Tru9I TTAA 3 cut(s) 159, 914, 951
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 2 cut(s) 806, 1021
TseI GCWGC 6 cut(s) 434, 542, 641, 865, 998, 1127
Tsp45I GTSAC 2 cut(s) 806, 1021
TspDTI ATGAA 3 cut(s) 17, 969, 1131
TspRI CASTG 1 cut(s) 250
Vha464I CTTAAG 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 701
VspI ATTAAT 1 cut(s) 951
XagI CCTNNNNNAGG 3 cut(s) 511, 696, 1108
XapI RAATTY 1 cut(s) 483
XceI RCATGY 1 cut(s) 1153
XmaJI CCTAGG 1 cut(s) 748
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 4 cut(s) 446, 561, 749, 1142
ZrmI AGTACT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.