Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005958

Physical Location & Seq

Genomic Coordinates Forward (+)

3109669 .. 3114402

Gene Structure 4734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1043900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGAAGATCTTCGTCAAGACTCTCAAGGGCACGCACTTCGACCTCGAAGTGAAGCCCGAGGACACGGTTGCTGATGTGAAGAAACATATAGAAGCTTGTAAGGGTTCAGATGTTTACCCTGCTTCACAACAGATGCTAATTCATCAAGGAAAAGTGCTTAAAGATGACACAACGTTGGACGGAAATAAAGTTGCGGAAAATAGCTTTGTTGTGATAATGTTGACTAAGAGTAAGAGCCCACCTGGCGGTGAAGGTTCAGGTGCATCAACAGCGGCTACAACTGAGGCACCACAGCCAAGTGCACATACTGGTGCTCCAACTGCGACATTAACGGCAACTCCGGCCCCTGCAGCAGCCTCAGCACTGCCTGCACCTGTTACCACACCTGCTCCTGTCGCTTCCCCTACCACGGATTCACAAGCAGATTCTTACGGCCAAGCTGCATCTGATCTGGTAGCTGGAACTAACTTGGAGGGAACAATTCAGCAAATTCTAGATATGGGTGGAGGGACGTGGGACAGGGATACTGTTGTACGTGCTCTTCGTGCTGCATTCAACAACCCAGCAAGAGCTATTGACTATCTTTATTCTGGTATCCCTGAGCAACCTGAAGCTCCACCTACAGTCCCTATTCCTGTGAGTGAGCAAGTCACAAACCCTCCAGCACAACCAGCATCCGCTCCTCCAAGCAGACCTAATGCCGATCCTTTAAATCTGTTTCCGCAGGGCCTTCCGAACGTGGGTGCTGGTGGTGCAGGCAATCTTGATTTTCTTCGTGACAACCAACAGTTCCAAGCCTTGCGATCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTTCAAGAGTTGGGGAAACAAAACCCTAATCTAGTGAGGCTAATTGGCACGCATCAGGCTGACTTCCTTCGCCTGATTAACGAACCTGCTGAAGGTGGAGAAGGGAACGTACTGGGAGATGCAGCAGTGCCACAGGCAATAACTATCACTCGTGAGGAGCGTGAAGCTATAGAACGTCTTGAAGCAATGGGGTTCGCTCGAGCAATTGTATTGCAGGTGTTCTTTGCCTGCAACAAGAACGAAGAATTGGCCGCCAACTACCTCTTAGACCACATGCATGAATTTGAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

379

Amino Acids

39.99

Weight (kDa)

4.81

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	3 - 76	3.1e-18	Ubiquitin family
UBA	PF00627	160 - 195	2.1e-09	UBA/TS-N domain
XPC-binding	PF09280	255 - 311	8.6e-23	XPC-binding domain
UBA	PF00627	334 - 369	4.8e-10	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02540 AT3G02540 AT3G02540
fragaria_vesca	FvH4_4g27550 FvH4_4g27550
malus_domestica	MD13G1043000.v1.1 MD16G1043900.v1.1
prunus_persica	Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309600_v2.0.a1 Prupe.1G309600_v2.0.a1
pyrus_communis	pycom13g03780 pycom16g03810
rosa_chinensis	RchiOBHm_Chr4g0435391
rosa_multiflora	Rmu_co8381849.1_g000001 Rmu_co8396387.1_g000001 Rmu_sc0001940.1_g000019
rosa_roxburghii	Rroxscaffold_5G00376630
rosa_rugosa	Rorug04G0284600
rosa_samantha	Rh4AG340200 Rh4BG348700 Rh4CG363200 Rh4DG342800
rosa_wichuraiana	Rw4G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	394, 1048
Acc36I	ACCTGC	3 cut(s)	394, 937, 1048
AccB1I	GGYRCC	1 cut(s)	286
AccBSI	CCGCTC	1 cut(s)	680
AciI	CCGC	6 cut(s)	194, 246, 272, 678, 722, 1095
AclI	AACGTT	1 cut(s)	173
AclWI	GGATC	1 cut(s)	698
AcoI	YGGCCR	2 cut(s)	433, 1092
AcsI	RAATTY	2 cut(s)	489, 1124
AcuI	CTGAAG	2 cut(s)	630, 954
AfaI	GTAC	2 cut(s)	534, 954
AfiI	CCNNNNNNNGG	4 cut(s)	245, 409, 740, 935
AgsI	TTSAA	3 cut(s)	556, 848, 1025
AjiI	CACGTC	1 cut(s)	513
AjnI	CCWGG	1 cut(s)	241
AjuI	GAANNNNNNNTTGG	2 cut(s)	1073, 1105
AluBI	AGCT	7 cut(s)	95, 204, 440, 458, 572, 614, 1010
AluI	AGCT	7 cut(s)	95, 204, 440, 458, 572, 614, 1010
Alw21I	GWGCWC	3 cut(s)	304, 316, 541
Alw44I	GTGCAC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	698
Ama87I	CYCGRG	2 cut(s)	56, 1041
AoxI	GGCC	4 cut(s)	342, 433, 727, 1092
ApaLI	GTGCAC	1 cut(s)	300
ApeKI	GCWGC	6 cut(s)	350, 353, 440, 548, 835, 965
ApoI	RAATTY	2 cut(s)	489, 1124
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	343, 727
AsuHPI	GGTGA	1 cut(s)	260
AvaI	CYCGRG	2 cut(s)	56, 1041
BaeGI	GKGCMC	2 cut(s)	32, 304
BaeI	ACNNNNGTAYC	2 cut(s)	516, 549
BanI	GGYRCC	1 cut(s)	286
BanII	GRGCYC	1 cut(s)	239
BarI	GAAGNNNNNNTAC	4 cut(s)	525, 557, 936, 968
BauI	CACGAG	1 cut(s)	993
Bbv12I	GWGCWC	3 cut(s)	304, 316, 541
BbvCI	CCTCAGC	1 cut(s)	358
BbvI	GCAGC	6 cut(s)	362, 365, 427, 535, 847, 977
BceAI	ACGGC	2 cut(s)	348, 448
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciT130I	CCWGG	1 cut(s)	243
BciVI	GTATCC	2 cut(s)	517, 605
BfaI	CTAG	2 cut(s)	494, 875
BfmI	CTRYAG	3 cut(s)	348, 621, 1011
BfuAI	ACCTGC	3 cut(s)	394, 937, 1048
BfuI	GTATCC	2 cut(s)	517, 605
BglI	GCCNNNNNGGC	1 cut(s)	243
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	8 cut(s)	273, 351, 354, 441, 549, 836, 966, 1095
BlsI	GCNGC	8 cut(s)	274, 352, 355, 442, 550, 837, 967, 1096
Bme1390I	CCNGG	1 cut(s)	243
BmeT110I	CYCGRG	2 cut(s)	56, 1041
BmgBI	CACGTC	1 cut(s)	513
BmgT120I	GGNCC	2 cut(s)	343, 727
BmiI	GGNNCC	2 cut(s)	288, 345
BmrFI	CCNGG	1 cut(s)	243
BmrI	ACTGGG	1 cut(s)	965
BmsI	GCATC	6 cut(s)	123, 272, 452, 683, 904, 952
BmuI	ACTGGG	1 cut(s)	965
BpmI	CTGGAG	1 cut(s)	645
Bpu10I	CCTNAGC	2 cut(s)	358, 600
BpuEI	CTTGAG	1 cut(s)	8
BsaAI	YACGTR	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	57, 408
BsaXI	ACNNNNNCTCC	8 cut(s)	298, 322, 328, 352, 373, 403, 643, 673
Bsc4I	CCNNNNNNNGG	4 cut(s)	245, 409, 740, 935
Bse1I	ACTGG	2 cut(s)	313, 960
Bse3DI	GCAATG	1 cut(s)	1035
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	2 cut(s)	57, 408
BseGI	GGATG	1 cut(s)	674
BseLI	CCNNNNNNNGG	4 cut(s)	245, 409, 740, 935
BseMI	GCAATG	1 cut(s)	1035
BseMII	CTCAG	3 cut(s)	273, 372, 591
BseNI	ACTGG	2 cut(s)	313, 960
BseRI	GAGGAG	2 cut(s)	672, 1013
BseSI	GKGCMC	2 cut(s)	32, 304
BseXI	GCAGC	6 cut(s)	362, 365, 427, 535, 847, 977
BseYI	CCCAGC	1 cut(s)	562
BsgI	GTGCAG	3 cut(s)	354, 774, 833
BshFI	GGCC	4 cut(s)	344, 435, 729, 1094
BshNI	GGYRCC	1 cut(s)	286
BsiHKAI	GWGCWC	3 cut(s)	304, 316, 541
BsiHKCI	CYCGRG	2 cut(s)	56, 1041
BsiSI	CCGG	1 cut(s)	341
BslFI	GGGAC	3 cut(s)	523, 530, 611
BslI	CCNNNNNNNGG	4 cut(s)	245, 409, 740, 935
BsmFI	GGGAC	3 cut(s)	523, 530, 611
BsmI	GAATGC	1 cut(s)	551
BsnI	GGCC	4 cut(s)	344, 435, 729, 1094
BsoBI	CYCGRG	2 cut(s)	56, 1041
Bsp1286I	GDGCHC	5 cut(s)	32, 239, 304, 316, 541
Bsp143I	GATC	4 cut(s)	6, 448, 703, 803
BspACI	CCGC	6 cut(s)	194, 246, 272, 678, 722, 1095
BspANI	GGCC	4 cut(s)	344, 435, 729, 1094
BspCNI	CTCAG	3 cut(s)	274, 371, 592
BspLI	GGNNCC	2 cut(s)	288, 345
BspMAI	CTGCAG	1 cut(s)	352
BspMI	ACCTGC	3 cut(s)	394, 937, 1048
BspPI	GGATC	1 cut(s)	698
BspQI	GCTCTTC	1 cut(s)	546
BspT107I	GGYRCC	1 cut(s)	286
BsrBI	CCGCTC	1 cut(s)	680
BsrDI	GCAATG	1 cut(s)	1035
BsrI	ACTGG	2 cut(s)	313, 960
BssECI	CCNNGG	2 cut(s)	57, 408
BssMI	GATC	4 cut(s)	6, 448, 703, 803
BssSI	CACGAG	1 cut(s)	993
Bst2BI	CACGAG	1 cut(s)	993
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	4 cut(s)	67, 529, 625, 789
Bst6I	CTCTTC	1 cut(s)	546
BstAPI	GCANNNNNTGC	2 cut(s)	368, 841
BstBAI	YACGTR	1 cut(s)	536
BstC8I	GCNNGC	6 cut(s)	32, 369, 757, 816, 893, 1072
BstDEI	CTNAG	5 cut(s)	225, 282, 358, 600, 1108
BstDSI	CCRYGG	1 cut(s)	408
BstENI	CCTNNNNNAGG	1 cut(s)	933
BstF5I	GGATG	1 cut(s)	674
BstKTI	GATC	4 cut(s)	9, 451, 706, 806
BstMBI	GATC	4 cut(s)	6, 448, 703, 803
BstNI	CCWGG	1 cut(s)	243
BstNSI	RCATGY	1 cut(s)	1120
BstSCI	CCNGG	1 cut(s)	241
BstSFI	CTRYAG	3 cut(s)	348, 621, 1011
BstSLI	GKGCMC	2 cut(s)	32, 304
BstV1I	GCAGC	6 cut(s)	362, 365, 427, 535, 847, 977
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BsuI	GTATCC	2 cut(s)	517, 605
BsuRI	GGCC	4 cut(s)	344, 435, 729, 1094
BtgI	CCRYGG	1 cut(s)	408
BtrI	CACGTC	1 cut(s)	513
BtsCI	GGATG	1 cut(s)	674
BtsI	GCAGTG	2 cut(s)	362, 975
BtsIMutI	CAGTG	2 cut(s)	362, 975
BveI	ACCTGC	3 cut(s)	394, 937, 1048
Cac8I	GCNNGC	6 cut(s)	32, 369, 757, 816, 893, 1072
Cfr13I	GGNCC	2 cut(s)	343, 727
Csp6I	GTAC	2 cut(s)	533, 953
CspCI	CAANNNNNGTGG	2 cut(s)	813, 848
CviAII	CATG	2 cut(s)	1117, 1121
CviQI	GTAC	2 cut(s)	533, 953
DdeI	CTNAG	5 cut(s)	225, 282, 358, 600, 1108
DpnI	GATC	4 cut(s)	8, 450, 705, 805
DpnII	GATC	4 cut(s)	6, 448, 703, 803
DraI	TTTAAA	1 cut(s)	711
EaeI	YGGCCR	2 cut(s)	433, 1092
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Eco24I	GRGCYC	1 cut(s)	239
Eco57I	CTGAAG	2 cut(s)	630, 954
Eco88I	CYCGRG	2 cut(s)	56, 1041
EcoNI	CCTNNNNNAGG	1 cut(s)	933
EcoO109I	RGGNCCY	1 cut(s)	727
EcoRII	CCWGG	1 cut(s)	241
EcoT22I	ATGCAT	1 cut(s)	1122
EcoT38I	GRGCYC	1 cut(s)	239
FaeI	CATG	2 cut(s)	1120, 1124
FaiI	YATR	9 cut(s)	87, 89, 306, 500, 809, 842, 1013, 1118, 1122
FaqI	GGGAC	3 cut(s)	523, 530, 611
FatI	CATG	2 cut(s)	1116, 1120
Fnu4HI	GCNGC	8 cut(s)	273, 351, 354, 441, 549, 836, 966, 1095
FokI	GGATG	1 cut(s)	661
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	8 cut(s)	273, 351, 354, 441, 549, 836, 966, 1095
FspBI	CTAG	2 cut(s)	494, 875
GluI	GCNGC	8 cut(s)	273, 351, 354, 441, 549, 836, 966, 1095
GsaI	CCCAGC	1 cut(s)	566
GsuI	CTGGAG	1 cut(s)	645
HaeIII	GGCC	4 cut(s)	344, 435, 729, 1094
HapII	CCGG	1 cut(s)	341
Hin1II	CATG	2 cut(s)	1120, 1124
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	3 cut(s)	19, 413, 425
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	3 cut(s)	115, 222, 302
Hpy188I	TCNGA	3 cut(s)	109, 448, 735
Hpy188III	TCNNGA	7 cut(s)	16, 494, 764, 776, 848, 995, 1022
Hpy8I	GTNNAC	3 cut(s)	115, 222, 302
HpyAV	CCTTC	5 cut(s)	245, 740, 920, 929, 938
HpyCH4III	ACNGT	4 cut(s)	67, 529, 625, 789
HpyCH4IV	ACGT	6 cut(s)	173, 512, 535, 738, 951, 1018
HpyF3I	CTNAG	5 cut(s)	225, 282, 358, 600, 1108
HpySE526I	ACGT	6 cut(s)	173, 512, 535, 738, 951, 1018
Hsp92II	CATG	2 cut(s)	1120, 1124
Kzo9I	GATC	4 cut(s)	6, 448, 703, 803
LguI	GCTCTTC	1 cut(s)	546
LmnI	GCTCC	5 cut(s)	319, 394, 619, 685, 1000
Lsp1109I	GCAGC	6 cut(s)	362, 365, 427, 535, 847, 977
LweI	GCATC	6 cut(s)	123, 272, 452, 683, 904, 952
MaeI	CTAG	2 cut(s)	494, 875
MaeII	ACGT	6 cut(s)	173, 512, 535, 738, 951, 1018
MaeIII	GTNAC	3 cut(s)	376, 649, 776
MalI	GATC	4 cut(s)	8, 450, 705, 805
MbiI	CCGCTC	1 cut(s)	680
MboI	GATC	4 cut(s)	6, 448, 703, 803
MboII	GAAGA	5 cut(s)	16, 91, 533, 764, 1097
MfeI	CAATTG	1 cut(s)	1047
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	5 cut(s)	32, 239, 304, 316, 541
MluCI	AATT	7 cut(s)	138, 480, 489, 885, 1047, 1088, 1124
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	2 cut(s)	156, 341
Mph1103I	ATGCAT	1 cut(s)	1122
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	4 cut(s)	159, 329, 710, 921
MslI	CAYNNNNRTG	2 cut(s)	309, 1119
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	243
MunI	CAATTG	1 cut(s)	1047
Mva1269I	GAATGC	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	243
NdeII	GATC	4 cut(s)	6, 448, 703, 803
NlaIII	CATG	2 cut(s)	1120, 1124
NlaIV	GGNNCC	2 cut(s)	288, 345
NmuCI	GTSAC	2 cut(s)	649, 776
NsiI	ATGCAT	1 cut(s)	1122
NspI	RCATGY	1 cut(s)	1120
PaeR7I	CTCGAG	1 cut(s)	1041
PaqCI	CACCTGC	2 cut(s)	394, 1048
PciSI	GCTCTTC	1 cut(s)	546
PcsI	WCGNNNNNNNCGW	2 cut(s)	541, 1000
PctI	GAATGC	1 cut(s)	551
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	413, 425
PkrI	GCNGC	8 cut(s)	274, 352, 355, 442, 550, 837, 967, 1096
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Ppu21I	YACGTR	1 cut(s)	536
Psp1406I	AACGTT	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	241
PspFI	CCCAGC	1 cut(s)	562
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	2 cut(s)	288, 345
PspPI	GGNCC	2 cut(s)	343, 727
PspXI	VCTCGAGB	1 cut(s)	1041
PstI	CTGCAG	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	6
RsaI	GTAC	2 cut(s)	534, 954
RsaNI	GTAC	2 cut(s)	533, 953
RseI	CAYNNNNRTG	2 cut(s)	309, 1119
SapI	GCTCTTC	1 cut(s)	546
SaqAI	TTAA	4 cut(s)	159, 329, 710, 921
SatI	GCNGC	8 cut(s)	273, 351, 354, 441, 549, 836, 966, 1095
Sau3AI	GATC	4 cut(s)	6, 448, 703, 803
Sau96I	GGNCC	2 cut(s)	343, 727
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	5 cut(s)	32, 239, 304, 316, 541
SfaNI	GCATC	6 cut(s)	123, 272, 452, 683, 904, 952
SfcI	CTRYAG	3 cut(s)	348, 621, 1011
Sfr274I	CTCGAG	1 cut(s)	1041
SlaI	CTCGAG	1 cut(s)	1041
SmiMI	CAYNNNNRTG	2 cut(s)	309, 1119
SmlI	CTYRAG	2 cut(s)	23, 1041
SmoI	CTYRAG	2 cut(s)	23, 1041
Sse9I	AATT	7 cut(s)	138, 480, 489, 885, 1047, 1088, 1124
SsiI	CCGC	6 cut(s)	194, 246, 272, 678, 722, 1095
SspI	AATATT	1 cut(s)	831
SspMI	CTAG	2 cut(s)	494, 875
StyD4I	CCNGG	1 cut(s)	241
TaaI	ACNGT	4 cut(s)	67, 529, 625, 789
TaiI	ACGT	6 cut(s)	176, 515, 538, 741, 954, 1021
TaqI	TCGA	3 cut(s)	39, 45, 1042
TasI	AATT	7 cut(s)	138, 480, 489, 885, 1047, 1088, 1124
TauI	GCSGC	2 cut(s)	275, 1097
TfiI	GAWTC	2 cut(s)	413, 425
Tru1I	TTAA	4 cut(s)	159, 329, 710, 921
Tru9I	TTAA	4 cut(s)	159, 329, 710, 921
TscAI	CASTG	2 cut(s)	369, 975
TseFI	GTSAC	2 cut(s)	649, 776
TseI	GCWGC	6 cut(s)	350, 353, 440, 548, 835, 965
Tsp45I	GTSAC	2 cut(s)	649, 776
TspDTI	ATGAA	3 cut(s)	17, 131, 1137
TspGWI	ACGGA	2 cut(s)	195, 425
TspRI	CASTG	2 cut(s)	369, 975
VneI	GTGCAC	1 cut(s)	300
XagI	CCTNNNNNAGG	1 cut(s)	933
XapI	RAATTY	2 cut(s)	489, 1124
XbaI	TCTAGA	1 cut(s)	493
XceI	RCATGY	1 cut(s)	1120
XhoI	CTCGAG	1 cut(s)	1041
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	2 cut(s)	494, 875
Zsp2I	ATGCAT	1 cut(s)	1122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.