RchiOBHm_Chr4g0435391

Ubiquitin receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0005958
Physical Location & Seq
Forward (+)
58968635 .. 58973552
4918 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40382

Sequence Viewer

Length: 1188 bp
ATGAAGATCTTCGTGAAGACTCTCAAGGGGACTCACTTCGAAGTCGAAGTCAAGCCTCAGGACTCGGTTGCTGATGTGAAGAAGTCGATAGAAACTTCTCAAGGTTCAGATGTATATCCTGCTACACAACAGATGCTAATCCATCAAGGAAAAGTACTTAAGGATGGGACGACATTGGAAGAAAACAAAGTTGTGGAAAATAGCTTTGTTGTGATAATGTTGACGAAGAGTAAGAGCTCATCCAGTGAGGGCTCAAGTGCGTCAACTGCAACTACGACTAAGGAACCACAGCCAAGTACACCTTCAGCTGCTCCAACTGCAACATCCACGACACCTCAGGCTCCTGTCTCAACATCAGCACCGCCAGCATCTGTTACCACGCCAGCTCCCATCTCTTCGGCCACAACAGATTTAGATTCCTATGGCCAAGCAGCATCTGATCTAGTAGCTGGAAACAACTTGGAGGGAACAATTCAGCAAATTCTGGATATGGGTGGAGGAACCTGGGACAGGGATACTGTTGTACGTGCTCTTCGTGCTGCGTTCAACAACCCAGCTAGAGCAATTGATTACTTATATTCAGGTATCCCTGAGCAACCTGAAGCTCCTGTAGCTCGTATCCCTGTGAGTGGCGATGCTGCAAACCTTCCAGCACAACCTCCTCAATCAGCACAGCCAGCATCCACTCCTTCAACAGGACCTAATGCCAATCCTTTAGACCTCTTTCCACAGGGCCTTCCGAACCTAGGTGCCGGAGCTGGAGCTGGAGCTGGAGCGGGTGCAGGTGCGGGTGCGGGTGCAGGTAATCTTGATTTTCTGCGTGACAGCCCACAGTTCCAAGCCTTGCGAGCTATGGTGCAAGCTAATCCACAAATATTGCAGCCTATGCTTCAAGAGTTGGGAAAACAAAATCCTCAGCTTGTAAGGTTAATTCAACAACATCAAGCTGACTTCCTTCGCCTAATTAATGAACCTGTCGAAGGAGGAGAAGGGGATGTGTTGGGACAACTGGATGCAGCAATGCCACAGGCAATAACTGTCACTCCCGAGGAGCGTGAAGCCATAGAACGTCTTGAAGCAATGGGCTTTGATAGAGCACTTGTATTGGAGGTGTTCGTTGCCTGCAACAGGAATGAAGAATTGGCTGCAAACTACCTCTTAGATCACATGCACGAGTTTGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03420 ko04141 map03420 map04141
Pfam Domains
Protein Families
UBA XPC-binding ubiquitin

Protein Analysis

395

Amino Acids

41.48

Weight (kDa)

4.61

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 73 3.2e-06 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 76 1.2e-17 Ubiquitin family
UBA PF00627 157 - 192 2.1e-09 UBA/TS-N domain
XPC-binding PF09280 270 - 325 4.1e-24 XPC-binding domain
UBA PF00627 351 - 386 8.1e-10 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 773
Acc36I ACCTGC 2 cut(s) 773, 791
AccB1I GGYRCC 1 cut(s) 749
AccBSI CCGCTC 1 cut(s) 776
AciI CCGC 4 cut(s) 362, 776, 788, 794
AcoI YGGCCR 2 cut(s) 399, 424
AcsI RAATTY 1 cut(s) 480
AcuI CTGAAG 2 cut(s) 288, 621
AfaI GTAC 3 cut(s) 156, 298, 525
AfiI CCNNNNNNNGG 6 cut(s) 510, 629, 695, 746, 980, 1128
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 5 cut(s) 547, 693, 893, 935, 1076
AjnI CCWGG 1 cut(s) 503
AjuI GAANNNNNNNTTGG 4 cut(s) 286, 318, 1124, 1156
Alw21I GWGCWC 3 cut(s) 239, 532, 1099
Alw26I GTCTC 1 cut(s) 352
AlwNI CAGNNNCTG 2 cut(s) 371, 437
Ama87I CYCGRG 1 cut(s) 1046
AoxI GGCC 3 cut(s) 399, 424, 733
ApeKI GCWGC 7 cut(s) 308, 431, 539, 638, 880, 1016, 1145
ApoI RAATTY 1 cut(s) 480
ArsI GACNNNNNNTTYG 2 cut(s) 33, 65
AseI ATTAAT 1 cut(s) 966
Asp700I GAANNNNTTC 1 cut(s) 8
AspA2I CCTAGG 1 cut(s) 745
AspS9I GGNCC 2 cut(s) 698, 733
AsuII TTCGAA 1 cut(s) 39
AvaI CYCGRG 1 cut(s) 1046
AvaII GGWCC 1 cut(s) 698
AvrII CCTAGG 1 cut(s) 745
AxyI CCTNAGG 2 cut(s) 57, 336
BaeI ACNNNNGTAYC 2 cut(s) 507, 540
BalI TGGCCA 1 cut(s) 426
BanI GGYRCC 1 cut(s) 749
BanII GRGCYC 2 cut(s) 239, 254
BarI GAAGNNNNNNTAC 2 cut(s) 516, 548
BauI CACGAG 1 cut(s) 1172
BbsI GAAGAC 1 cut(s) 23
Bbv12I GWGCWC 3 cut(s) 239, 532, 1099
BbvCI CCTCAGC 1 cut(s) 915
BbvI GCAGC 7 cut(s) 295, 443, 526, 625, 892, 1028, 1132
BccI CCATC 3 cut(s) 150, 158, 398
BciT130I CCWGG 1 cut(s) 505
BciVI GTATCC 3 cut(s) 508, 596, 629
BcoDI GTCTC 1 cut(s) 352
BfaI CTAG 3 cut(s) 443, 558, 746
BfmI CTRYAG 1 cut(s) 609
BfrI CTTAAG 1 cut(s) 158
BfuAI ACCTGC 2 cut(s) 773, 791
BfuI GTATCC 3 cut(s) 508, 596, 629
BglII AGATCT 1 cut(s) 6
BisI GCNGC 7 cut(s) 309, 432, 540, 639, 881, 1017, 1146
BlnI CCTAGG 1 cut(s) 745
BlsI GCNGC 7 cut(s) 310, 433, 541, 640, 882, 1018, 1147
BmcAI AGTACT 1 cut(s) 156
Bme1390I CCNGG 1 cut(s) 505
Bme18I GGWCC 1 cut(s) 698
BmeT110I CYCGRG 1 cut(s) 1046
BmgT120I GGNCC 2 cut(s) 698, 733
BmiI GGNNCC 4 cut(s) 285, 342, 502, 751
BmrFI CCNGG 1 cut(s) 505
BmsI GCATC 6 cut(s) 123, 377, 443, 625, 689, 1003
BpiI GAAGAC 1 cut(s) 23
BpmI CTGGAG 3 cut(s) 780, 786, 792
Bpu10I CCTNAGC 2 cut(s) 591, 915
Bpu14I TTCGAA 1 cut(s) 39
BpuEI CTTGAG 3 cut(s) 8, 84, 238
BsaAI YACGTR 1 cut(s) 527
BsaBI GATNNNNATC 2 cut(s) 114, 137
BsaJI CCNNGG 3 cut(s) 504, 745, 1047
BsaXI ACNNNNNCTCC 4 cut(s) 370, 400, 1027, 1057
Bsc4I CCNNNNNNNGG 6 cut(s) 510, 629, 695, 746, 980, 1128
Bse1I ACTGG 2 cut(s) 243, 1014
Bse21I CCTNAGG 2 cut(s) 57, 336
Bse3DI GCAATG 2 cut(s) 1026, 1086
Bse8I GATNNNNATC 2 cut(s) 114, 137
BseBI CCWGG 1 cut(s) 505
BseDI CCNNGG 3 cut(s) 504, 745, 1047
BseGI GGATG 6 cut(s) 169, 239, 323, 680, 1000, 1018
BseJI GATNNNNATC 2 cut(s) 114, 137
BseLI CCNNNNNNNGG 6 cut(s) 510, 629, 695, 746, 980, 1128
BseMI GCAATG 2 cut(s) 1026, 1086
BseMII CTCAG 4 cut(s) 71, 350, 582, 929
BseNI ACTGG 2 cut(s) 243, 1014
BseRI GAGGAG 3 cut(s) 651, 999, 1064
BseXI GCAGC 7 cut(s) 295, 443, 526, 625, 892, 1028, 1132
BseYI CCCAGC 1 cut(s) 553
BsgI GTGCAG 2 cut(s) 801, 819
BshFI GGCC 3 cut(s) 401, 426, 735
BshNI GGYRCC 1 cut(s) 749
BsiHKAI GWGCWC 3 cut(s) 239, 532, 1099
BsiHKCI CYCGRG 1 cut(s) 1046
BsiSI CCGG 1 cut(s) 753
BslFI GGGAC 4 cut(s) 43, 181, 521, 1017
BslI CCNNNNNNNGG 6 cut(s) 510, 629, 695, 746, 980, 1128
BsmAI GTCTC 1 cut(s) 352
BsmFI GGGAC 4 cut(s) 43, 181, 521, 1017
BsnI GGCC 3 cut(s) 401, 426, 735
BsoBI CYCGRG 1 cut(s) 1046
Bsp119I TTCGAA 1 cut(s) 39
Bsp1286I GDGCHC 4 cut(s) 239, 254, 532, 1099
Bsp143I GATC 3 cut(s) 6, 439, 1162
BspACI CCGC 4 cut(s) 362, 776, 788, 794
BspANI GGCC 3 cut(s) 401, 426, 735
BspCNI CTCAG 4 cut(s) 70, 349, 583, 928
BspLI GGNNCC 4 cut(s) 285, 342, 502, 751
BspMI ACCTGC 2 cut(s) 773, 791
BspQI GCTCTTC 1 cut(s) 537
BspT104I TTCGAA 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 749
BspTI CTTAAG 1 cut(s) 158
BsrBI CCGCTC 1 cut(s) 776
BsrDI GCAATG 2 cut(s) 1026, 1086
BsrI ACTGG 2 cut(s) 243, 1014
BssECI CCNNGG 3 cut(s) 504, 745, 1047
BssMI GATC 3 cut(s) 6, 439, 1162
BssSI CACGAG 1 cut(s) 1172
BssT1I CCWWGG 1 cut(s) 745
Bst2BI CACGAG 1 cut(s) 1172
Bst2UI CCWGG 1 cut(s) 505
Bst4CI ACNGT 3 cut(s) 520, 834, 1039
Bst6I CTCTTC 3 cut(s) 221, 400, 537
BstAFI CTTAAG 1 cut(s) 158
BstAPI GCANNNNNTGC 1 cut(s) 886
BstBAI YACGTR 1 cut(s) 527
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 6 cut(s) 366, 384, 678, 849, 861, 1123
BstDEI CTNAG 6 cut(s) 57, 279, 336, 591, 915, 1159
BstENI CCTNNNNNAGG 4 cut(s) 508, 693, 978, 1126
BstF5I GGATG 6 cut(s) 169, 239, 323, 680, 1000, 1018
BstKTI GATC 3 cut(s) 9, 442, 1165
BstMAI GTCTC 1 cut(s) 352
BstMBI GATC 3 cut(s) 6, 439, 1162
BstMWI GCNNNNNNNGC 8 cut(s) 266, 317, 365, 536, 611, 677, 848, 886
BstNI CCWGG 1 cut(s) 505
BstNSI RCATGY 1 cut(s) 1171
BstSCI CCNGG 1 cut(s) 503
BstSFI CTRYAG 1 cut(s) 609
BstV1I GCAGC 7 cut(s) 295, 443, 526, 625, 892, 1028, 1132
BstV2I GAAGAC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
Bsu36I CCTNAGG 2 cut(s) 57, 336
BsuI GTATCC 3 cut(s) 508, 596, 629
BsuRI GGCC 3 cut(s) 401, 426, 735
BtgZI GCGATG 1 cut(s) 648
BtsCI GGATG 6 cut(s) 169, 239, 323, 680, 1000, 1018
BtsIMutI CAGTG 1 cut(s) 250
BveI ACCTGC 2 cut(s) 773, 791
Cac8I GCNNGC 6 cut(s) 366, 384, 678, 849, 861, 1123
CaiI CAGNNNCTG 2 cut(s) 371, 437
Cfr13I GGNCC 2 cut(s) 698, 733
CseI GACGC 1 cut(s) 249
Csp6I GTAC 3 cut(s) 155, 297, 524
CspCI CAANNNNNGTGG 2 cut(s) 858, 893
CviAII CATG 1 cut(s) 1168
CviQI GTAC 3 cut(s) 155, 297, 524
DdeI CTNAG 6 cut(s) 57, 279, 336, 591, 915, 1159
DpnI GATC 3 cut(s) 8, 441, 1164
DpnII GATC 3 cut(s) 6, 439, 1162
EaeI YGGCCR 2 cut(s) 399, 424
Eam1104I CTCTTC 3 cut(s) 221, 400, 537
EarI CTCTTC 3 cut(s) 221, 400, 537
Ecl136II GAGCTC 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 745
Eco24I GRGCYC 2 cut(s) 239, 254
Eco47I GGWCC 1 cut(s) 698
Eco53kI GAGCTC 1 cut(s) 237
Eco57I CTGAAG 2 cut(s) 288, 621
Eco81I CCTNAGG 2 cut(s) 57, 336
Eco88I CYCGRG 1 cut(s) 1046
EcoICRI GAGCTC 1 cut(s) 237
EcoNI CCTNNNNNAGG 4 cut(s) 508, 693, 978, 1126
EcoO109I RGGNCCY 2 cut(s) 698, 733
EcoRII CCWGG 1 cut(s) 503
EcoT14I CCWWGG 1 cut(s) 745
EcoT38I GRGCYC 2 cut(s) 239, 254
ErhI CCWWGG 1 cut(s) 745
FaeI CATG 1 cut(s) 1171
FaiI YATR 8 cut(s) 115, 423, 491, 577, 854, 887, 1064, 1169
FalI AAGNNNNNCTT 2 cut(s) 286, 318
FaqI GGGAC 4 cut(s) 43, 181, 521, 1017
FatI CATG 1 cut(s) 1167
FauI CCCGC 3 cut(s) 769, 781, 787
Fnu4HI GCNGC 7 cut(s) 309, 432, 540, 639, 881, 1017, 1146
FokI GGATG 6 cut(s) 176, 226, 310, 667, 1007, 1025
FriOI GRGCYC 2 cut(s) 239, 254
Fsp4HI GCNGC 7 cut(s) 309, 432, 540, 639, 881, 1017, 1146
FspBI CTAG 3 cut(s) 443, 558, 746
GluI GCNGC 7 cut(s) 309, 432, 540, 639, 881, 1017, 1146
GsaI CCCAGC 1 cut(s) 557
GsuI CTGGAG 3 cut(s) 780, 786, 792
HaeIII GGCC 3 cut(s) 401, 426, 735
HapII CCGG 1 cut(s) 753
HgaI GACGC 1 cut(s) 249
Hin1II CATG 1 cut(s) 1171
HincII GTYRAC 2 cut(s) 222, 264
HindII GTYRAC 2 cut(s) 222, 264
HinfI GANTC 4 cut(s) 19, 31, 62, 416
HpaII CCGG 1 cut(s) 753
Hpy166II GTNNAC 3 cut(s) 222, 264, 299
Hpy188I TCNGA 3 cut(s) 109, 439, 741
Hpy188III TCNNGA 7 cut(s) 13, 59, 485, 809, 893, 1046, 1073
Hpy8I GTNNAC 3 cut(s) 222, 264, 299
HpyAV CCTTC 7 cut(s) 312, 656, 699, 746, 965, 974, 983
HpyCH4III ACNGT 3 cut(s) 520, 834, 1039
HpyCH4IV ACGT 2 cut(s) 526, 1069
HpyF10VI GCNNNNNNNGC 8 cut(s) 266, 317, 365, 536, 611, 677, 848, 886
HpyF3I CTNAG 6 cut(s) 57, 279, 336, 591, 915, 1159
HpySE526I ACGT 2 cut(s) 526, 1069
Hsp92II CATG 1 cut(s) 1171
Kzo9I GATC 3 cut(s) 6, 439, 1162
LguI GCTCTTC 1 cut(s) 537
LmnI GCTCC 9 cut(s) 316, 346, 391, 610, 755, 761, 767, 773, 1051
Lsp1109I GCAGC 7 cut(s) 295, 443, 526, 625, 892, 1028, 1132
LweI GCATC 6 cut(s) 123, 377, 443, 625, 689, 1003
MaeI CTAG 3 cut(s) 443, 558, 746
MaeII ACGT 2 cut(s) 526, 1069
MaeIII GTNAC 3 cut(s) 373, 821, 1039
MalI GATC 3 cut(s) 8, 441, 1164
MbiI CCGCTC 1 cut(s) 776
MboI GATC 3 cut(s) 6, 439, 1162
MboII GAAGA 8 cut(s) 16, 28, 91, 191, 238, 387, 524, 1148
MfeI CAATTG 1 cut(s) 564
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 4 cut(s) 239, 254, 532, 1099
MlsI TGGCCA 1 cut(s) 426
MluCI AATT 6 cut(s) 471, 480, 564, 930, 963, 1139
MluNI TGGCCA 1 cut(s) 426
MlyI GAGTC 3 cut(s) 13, 25, 56
MmeI TCCRAC 1 cut(s) 338
Mox20I TGGCCA 1 cut(s) 426
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 426
MseI TTAA 3 cut(s) 159, 929, 966
Msp20I TGGCCA 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 308
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 1 cut(s) 753
MspR9I CCNGG 1 cut(s) 505
MunI CAATTG 1 cut(s) 564
MvaI CCWGG 1 cut(s) 505
MwoI GCNNNNNNNGC 8 cut(s) 266, 317, 365, 536, 611, 677, 848, 886
NdeII GATC 3 cut(s) 6, 439, 1162
NlaIII CATG 1 cut(s) 1171
NlaIV GGNNCC 4 cut(s) 285, 342, 502, 751
NmuCI GTSAC 2 cut(s) 821, 1039
NspI RCATGY 1 cut(s) 1171
NspV TTCGAA 1 cut(s) 39
PaqCI CACCTGC 1 cut(s) 773
PciSI GCTCTTC 1 cut(s) 537
PcsI WCGNNNNNNNCGW 1 cut(s) 532
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 416
PkrI GCNGC 7 cut(s) 310, 433, 541, 640, 882, 1018, 1147
PleI GAGTC 3 cut(s) 13, 25, 56
PpsI GAGTC 3 cut(s) 13, 25, 56
Ppu21I YACGTR 1 cut(s) 527
PpuMI RGGWCCY 1 cut(s) 698
PshBI ATTAAT 1 cut(s) 966
Psp124BI GAGCTC 1 cut(s) 239
Psp5II RGGWCCY 1 cut(s) 698
Psp6I CCWGG 1 cut(s) 503
PspFI CCCAGC 1 cut(s) 553
PspGI CCWGG 1 cut(s) 503
PspN4I GGNNCC 4 cut(s) 285, 342, 502, 751
PspPI GGNCC 2 cut(s) 698, 733
PspPPI RGGWCCY 1 cut(s) 698
PstNI CAGNNNCTG 2 cut(s) 371, 437
PsuI RGATCY 1 cut(s) 6
PvuII CAGCTG 1 cut(s) 308
RsaI GTAC 3 cut(s) 156, 298, 525
RsaNI GTAC 3 cut(s) 155, 297, 524
SacI GAGCTC 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 537
SaqAI TTAA 3 cut(s) 159, 929, 966
SatI GCNGC 7 cut(s) 309, 432, 540, 639, 881, 1017, 1146
Sau3AI GATC 3 cut(s) 6, 439, 1162
Sau96I GGNCC 2 cut(s) 698, 733
ScaI AGTACT 1 cut(s) 156
SchI GAGTC 3 cut(s) 13, 25, 56
ScrFI CCNGG 1 cut(s) 505
SduI GDGCHC 4 cut(s) 239, 254, 532, 1099
SfaNI GCATC 6 cut(s) 123, 377, 443, 625, 689, 1003
SfcI CTRYAG 1 cut(s) 609
SfuI TTCGAA 1 cut(s) 39
SinI GGWCC 1 cut(s) 698
SmlI CTYRAG 4 cut(s) 23, 99, 158, 253
SmoI CTYRAG 4 cut(s) 23, 99, 158, 253
Sse9I AATT 6 cut(s) 471, 480, 564, 930, 963, 1139
SsiI CCGC 4 cut(s) 362, 776, 788, 794
SspI AATATT 1 cut(s) 876
SspMI CTAG 3 cut(s) 443, 558, 746
SstI GAGCTC 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 503
StyI CCWWGG 1 cut(s) 745
TaaI ACNGT 3 cut(s) 520, 834, 1039
TaiI ACGT 2 cut(s) 529, 1072
TaqI TCGA 4 cut(s) 39, 45, 86, 978
TasI AATT 6 cut(s) 471, 480, 564, 930, 963, 1139
TatI WGTACW 2 cut(s) 154, 296
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 3 cut(s) 159, 929, 966
Tru9I TTAA 3 cut(s) 159, 929, 966
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 2 cut(s) 821, 1039
TseI GCWGC 7 cut(s) 308, 431, 539, 638, 880, 1016, 1145
Tsp45I GTSAC 2 cut(s) 821, 1039
TspDTI ATGAA 3 cut(s) 17, 984, 1149
TspRI CASTG 1 cut(s) 250
Vha464I CTTAAG 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 698
VspI ATTAAT 1 cut(s) 966
XagI CCTNNNNNAGG 4 cut(s) 508, 693, 978, 1126
XapI RAATTY 1 cut(s) 480
XceI RCATGY 1 cut(s) 1171
XmaJI CCTAGG 1 cut(s) 745
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 3 cut(s) 443, 558, 746
ZrmI AGTACT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.