Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005958

Physical Location & Seq

Genomic Coordinates Reverse (-)

30100884 .. 30105700

Gene Structure 4817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G309400.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAAGATTTTTGTCAAGACTCTCAAGGGCACTCACTTCGACGTCGCAGTGAAGCCTGAGGACACGGTTTCTGATGTGAAGAAACAGATAGAAACTAGTCAAGGTTCAGATGTATATCCTGCTTCACAACAGATGCTAATTCATCAAGGAAAAGTACTTAAAGATAGCACAACATTGGACGAAAACAAAGTTGCTGAAAACAGCTTTGTTGTGATAATGTTGACTAAGAGTAAGAGCTCGCTTGGTGAAGGTTCAGGTGCATCAACTGCGACTATAACTAAGGCACCACAGCCAAGTGCACCTTCTGCTGCTCCAACTGTGACATTAACGGCACCTCAGGCTCCAATACCAACCTCAGCATCGCCTGCTTCGGTTACCACACCTGCTCCTGTCTCTTCAGCTACCATGGACAGGGTAGAATCTAATCCCTACGGCCAAGCAGCATCTGATCTGGTAGCTGGAACTAACTTGGAGGGAACAATTCAGCAAATTCTGGATATGGGTGGAGGTACTTGGGACAGGGATACTGTTGTACGTGCTCTTCGTGCTGCTTTCAACAACCCAGCGAGAGCTATTGACTATCTTTATTCTGGTATCCCTGAGCAACCCGAAGTTCCACCTGTAGCCCATATTCCTGTGAGTGGGGAAGCTGCAAACCTTCCAGCACAATCTCCACAATCAGCACAACCAGCATCCACTCCTCCAAGCGGACCTAATGCCAATCCTTTAAACCTTTTTCCCCAGGGTCTTCCAAATGTGGGTGCTGGTGGTGCTGGTGCAGGCAATCTTGATTTTCTGCGTGACAGCCAACAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTTCAAGAGTTGGGGAAACAAAATCCTAATCTTATGAGGCTAATTCAACAGCATCAGGCTGACTTCCTTCGCCTGATTAATGAACCTGTAGAAGGTGGAGAAGGGAACATATTGGGCGATGCAGCAGTGCCGCAGTCAATAAGTGTTACTCCTGAGGAGCGTGAAGCTATAGAACGTCTTGAAGCAATGGGATTTGATCGAGCAATTGTATTGGAGGTGTTCTTTGCCTGCAACAAGAATGAAGAGTTGGCTGCCAACTACCTCTTAGACCACATGCATGAATTTGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

387

Amino Acids

40.96

Weight (kDa)

4.78

Isoelectric Point (pI)

52.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02540 AT3G02540 AT3G02540
fragaria_vesca	FvH4_4g27550 FvH4_4g27550
malus_domestica	MD13G1043000.v1.1 MD16G1043900.v1.1
prunus_persica	Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309600_v2.0.a1 Prupe.1G309600_v2.0.a1
pyrus_communis	pycom13g03780 pycom16g03810
rosa_chinensis	RchiOBHm_Chr4g0435391
rosa_multiflora	Rmu_co8381849.1_g000001 Rmu_co8396387.1_g000001 Rmu_sc0001940.1_g000019
rosa_roxburghii	Rroxscaffold_5G00376630
rosa_rugosa	Rorug04G0284600
rosa_samantha	Rh4AG340200 Rh4BG348700 Rh4CG363200 Rh4DG342800
rosa_wichuraiana	Rw4G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	391
AatII	GACGTC	1 cut(s)	45
Acc36I	ACCTGC	1 cut(s)	391
AccB1I	GGYRCC	2 cut(s)	283, 331
AciI	CCGC	2 cut(s)	708, 998
AcoI	YGGCCR	1 cut(s)	433
AcsI	RAATTY	2 cut(s)	489, 1148
AcuI	CTGAAG	1 cut(s)	381
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	3 cut(s)	156, 511, 534
AfiI	CCNNNNNNNGG	5 cut(s)	411, 641, 707, 758, 959
AgsI	TTSAA	4 cut(s)	556, 872, 914, 1049
AhlI	ACTAGT	1 cut(s)	95
AjnI	CCWGG	1 cut(s)	741
AjuI	GAANNNNNNNTTGG	4 cut(s)	286, 318, 1097, 1129
AluBI	AGCT	8 cut(s)	204, 237, 401, 458, 572, 650, 830, 1034
AluI	AGCT	8 cut(s)	204, 237, 401, 458, 572, 650, 830, 1034
Alw21I	GWGCWC	3 cut(s)	239, 301, 541
Alw26I	GTCTC	1 cut(s)	397
Alw44I	GTGCAC	1 cut(s)	297
AlwNI	CAGNNNCTG	1 cut(s)	446
AoxI	GGCC	1 cut(s)	433
ApaLI	GTGCAC	1 cut(s)	297
ApeKI	GCWGC	7 cut(s)	308, 440, 548, 650, 859, 989, 1118
ApoI	RAATTY	2 cut(s)	489, 1148
AseI	ATTAAT	1 cut(s)	945
AspS9I	GGNCC	1 cut(s)	710
AsuHPI	GGTGA	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	710
AxyI	CCTNAGG	3 cut(s)	57, 336, 1020
BaeGI	GKGCMC	2 cut(s)	32, 301
BaeI	ACNNNNGTAYC	2 cut(s)	516, 549
BanI	GGYRCC	2 cut(s)	283, 331
BanII	GRGCYC	1 cut(s)	239
BarI	GAAGNNNNNNTAC	2 cut(s)	525, 557
BbsI	GAAGAC	1 cut(s)	740
Bbv12I	GWGCWC	3 cut(s)	239, 301, 541
BbvCI	CCTCAGC	1 cut(s)	355
BbvI	GCAGC	7 cut(s)	295, 452, 535, 637, 871, 1001, 1105
BceAI	ACGGC	2 cut(s)	345, 448
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciT130I	CCWGG	1 cut(s)	743
BciVI	GTATCC	2 cut(s)	517, 605
BcoDI	GTCTC	1 cut(s)	397
BcuI	ACTAGT	1 cut(s)	95
BfaI	CTAG	1 cut(s)	96
BfmI	CTRYAG	3 cut(s)	621, 954, 1035
BfuAI	ACCTGC	1 cut(s)	391
BfuI	GTATCC	2 cut(s)	517, 605
BisI	GCNGC	8 cut(s)	309, 441, 549, 651, 860, 990, 998, 1119
BlsI	GCNGC	8 cut(s)	310, 442, 550, 652, 861, 991, 999, 1120
BmcAI	AGTACT	1 cut(s)	156
Bme1390I	CCNGG	1 cut(s)	743
Bme18I	GGWCC	1 cut(s)	710
BmgT120I	GGNCC	1 cut(s)	710
BmiI	GGNNCC	3 cut(s)	285, 333, 342
BmrFI	CCNGG	1 cut(s)	743
BmsI	GCATC	7 cut(s)	123, 269, 368, 452, 701, 928, 976
BpiI	GAAGAC	1 cut(s)	740
Bpu10I	CCTNAGC	2 cut(s)	355, 600
BpuEI	CTTGAG	1 cut(s)	8
BsaAI	YACGTR	1 cut(s)	536
BsaBI	GATNNNNATC	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	3 cut(s)	405, 741, 742
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bsc4I	CCNNNNNNNGG	5 cut(s)	411, 641, 707, 758, 959
Bse21I	CCTNAGG	3 cut(s)	57, 336, 1020
Bse3DI	GCAATG	1 cut(s)	1059
Bse8I	GATNNNNATC	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	743
BseDI	CCNNGG	3 cut(s)	405, 741, 742
BseGI	GGATG	1 cut(s)	692
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	5 cut(s)	411, 641, 707, 758, 959
BseMI	GCAATG	1 cut(s)	1059
BseMII	CTCAG	5 cut(s)	48, 350, 369, 591, 1011
BseRI	GAGGAG	2 cut(s)	690, 1037
BseSI	GKGCMC	2 cut(s)	32, 301
BseXI	GCAGC	7 cut(s)	295, 452, 535, 637, 871, 1001, 1105
BseYI	CCCAGC	1 cut(s)	562
BsgI	GTGCAG	2 cut(s)	798, 857
BshFI	GGCC	1 cut(s)	435
BshNI	GGYRCC	2 cut(s)	283, 331
BsiHKAI	GWGCWC	3 cut(s)	239, 301, 541
BslFI	GGGAC	1 cut(s)	530
BslI	CCNNNNNNNGG	5 cut(s)	411, 641, 707, 758, 959
BsmAI	GTCTC	1 cut(s)	397
BsmFI	GGGAC	1 cut(s)	530
BsnI	GGCC	1 cut(s)	435
Bsp1286I	GDGCHC	4 cut(s)	32, 239, 301, 541
Bsp143I	GATC	2 cut(s)	448, 1063
Bsp19I	CCATGG	1 cut(s)	405
BspACI	CCGC	2 cut(s)	708, 998
BspANI	GGCC	1 cut(s)	435
BspCNI	CTCAG	5 cut(s)	49, 349, 368, 592, 1012
BspLI	GGNNCC	3 cut(s)	285, 333, 342
BspMI	ACCTGC	1 cut(s)	391
BspQI	GCTCTTC	1 cut(s)	546
BspT107I	GGYRCC	2 cut(s)	283, 331
BsrDI	GCAATG	1 cut(s)	1059
BssECI	CCNNGG	3 cut(s)	405, 741, 742
BssMI	GATC	2 cut(s)	448, 1063
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	743
Bst4CI	ACNGT	4 cut(s)	67, 319, 529, 813
Bst6I	CTCTTC	3 cut(s)	400, 546, 1104
BstACI	GRCGYC	1 cut(s)	42
BstAPI	GCANNNNNTGC	4 cut(s)	266, 305, 365, 865
BstBAI	YACGTR	1 cut(s)	536
BstC8I	GCNNGC	6 cut(s)	239, 366, 781, 828, 840, 1096
BstDEI	CTNAG	8 cut(s)	57, 225, 279, 336, 355, 600, 1020, 1132
BstDSI	CCRYGG	1 cut(s)	405
BstEII	GGTNACC	1 cut(s)	373
BstENI	CCTNNNNNAGG	1 cut(s)	957
BstF5I	GGATG	1 cut(s)	692
BstKTI	GATC	2 cut(s)	451, 1066
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	2 cut(s)	448, 1063
BstMWI	GCNNNNNNNGC	9 cut(s)	266, 305, 338, 365, 545, 689, 770, 827, 865
BstNI	CCWGG	1 cut(s)	743
BstNSI	RCATGY	1 cut(s)	1144
BstPI	GGTNACC	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	741
BstSFI	CTRYAG	3 cut(s)	621, 954, 1035
BstSLI	GKGCMC	2 cut(s)	32, 301
BstV1I	GCAGC	7 cut(s)	295, 452, 535, 637, 871, 1001, 1105
BstV2I	GAAGAC	1 cut(s)	740
Bsu36I	CCTNAGG	3 cut(s)	57, 336, 1020
BsuI	GTATCC	2 cut(s)	517, 605
BsuRI	GGCC	1 cut(s)	435
BtgI	CCRYGG	1 cut(s)	405
BtgZI	GCGATG	2 cut(s)	345, 999
BtsCI	GGATG	1 cut(s)	692
BtsI	GCAGTG	2 cut(s)	54, 999
BtsIMutI	CAGTG	2 cut(s)	54, 999
BveI	ACCTGC	1 cut(s)	391
Cac8I	GCNNGC	6 cut(s)	239, 366, 781, 828, 840, 1096
CaiI	CAGNNNCTG	1 cut(s)	446
Cfr13I	GGNCC	1 cut(s)	710
Csp6I	GTAC	3 cut(s)	155, 510, 533
CspCI	CAANNNNNGTGG	2 cut(s)	837, 872
CviAII	CATG	3 cut(s)	406, 1141, 1145
CviQI	GTAC	3 cut(s)	155, 510, 533
DdeI	CTNAG	8 cut(s)	57, 225, 279, 336, 355, 600, 1020, 1132
DpnI	GATC	2 cut(s)	450, 1065
DpnII	GATC	2 cut(s)	448, 1063
DraI	TTTAAA	1 cut(s)	729
EaeI	YGGCCR	1 cut(s)	433
Eam1104I	CTCTTC	3 cut(s)	400, 546, 1104
EarI	CTCTTC	3 cut(s)	400, 546, 1104
Ecl136II	GAGCTC	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	405
Eco24I	GRGCYC	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	710
Eco53kI	GAGCTC	1 cut(s)	237
Eco57I	CTGAAG	1 cut(s)	381
Eco81I	CCTNAGG	3 cut(s)	57, 336, 1020
Eco91I	GGTNACC	1 cut(s)	373
EcoICRI	GAGCTC	1 cut(s)	237
EcoNI	CCTNNNNNAGG	1 cut(s)	957
EcoO65I	GGTNACC	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	741
EcoT14I	CCWWGG	1 cut(s)	405
EcoT22I	ATGCAT	1 cut(s)	1146
EcoT38I	GRGCYC	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	405
FaeI	CATG	3 cut(s)	409, 1144, 1148
FalI	AAGNNNNNCTT	2 cut(s)	286, 318
FaqI	GGGAC	1 cut(s)	530
FatI	CATG	3 cut(s)	405, 1140, 1144
Fnu4HI	GCNGC	8 cut(s)	309, 441, 549, 651, 860, 990, 998, 1119
FokI	GGATG	1 cut(s)	679
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	8 cut(s)	309, 441, 549, 651, 860, 990, 998, 1119
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	8 cut(s)	309, 441, 549, 651, 860, 990, 998, 1119
GsaI	CCCAGC	1 cut(s)	566
HaeIII	GGCC	1 cut(s)	435
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	409, 1144, 1148
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HinfI	GANTC	2 cut(s)	19, 419
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	2 cut(s)	222, 299
Hpy188I	TCNGA	3 cut(s)	73, 109, 448
Hpy188III	TCNNGA	6 cut(s)	16, 494, 788, 872, 1019, 1046
Hpy8I	GTNNAC	2 cut(s)	222, 299
Hpy99I	CGWCG	2 cut(s)	44, 47
HpyAV	CCTTC	6 cut(s)	242, 312, 668, 944, 953, 962
HpyCH4III	ACNGT	4 cut(s)	67, 319, 529, 813
HpyCH4IV	ACGT	3 cut(s)	42, 535, 1042
HpyCH4V	TGCA	9 cut(s)	260, 299, 653, 779, 838, 859, 989, 1098, 1144
HpyF10VI	GCNNNNNNNGC	9 cut(s)	266, 305, 338, 365, 545, 689, 770, 827, 865
HpyF3I	CTNAG	8 cut(s)	57, 225, 279, 336, 355, 600, 1020, 1132
HpySE526I	ACGT	3 cut(s)	42, 535, 1042
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	409, 1144, 1148
Kzo9I	GATC	2 cut(s)	448, 1063
LguI	GCTCTTC	1 cut(s)	546
LmnI	GCTCC	4 cut(s)	316, 346, 391, 1024
Lsp1109I	GCAGC	7 cut(s)	295, 452, 535, 637, 871, 1001, 1105
LweI	GCATC	7 cut(s)	123, 269, 368, 452, 701, 928, 976
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	3 cut(s)	42, 535, 1042
MaeIII	GTNAC	4 cut(s)	319, 373, 800, 1012
MalI	GATC	2 cut(s)	450, 1065
MboI	GATC	2 cut(s)	448, 1063
MboII	GAAGA	6 cut(s)	16, 91, 387, 533, 740, 1121
MfeI	CAATTG	1 cut(s)	1071
MhlI	GDGCHC	4 cut(s)	32, 239, 301, 541
MluCI	AATT	6 cut(s)	138, 480, 489, 909, 1071, 1148
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	338
Mph1103I	ATGCAT	1 cut(s)	1146
MseI	TTAA	4 cut(s)	159, 326, 728, 945
MslI	CAYNNNNRTG	1 cut(s)	1143
MspR9I	CCNGG	1 cut(s)	743
MunI	CAATTG	1 cut(s)	1071
MvaI	CCWGG	1 cut(s)	743
MwoI	GCNNNNNNNGC	9 cut(s)	266, 305, 338, 365, 545, 689, 770, 827, 865
NcoI	CCATGG	1 cut(s)	405
NdeII	GATC	2 cut(s)	448, 1063
NlaIII	CATG	3 cut(s)	409, 1144, 1148
NlaIV	GGNNCC	3 cut(s)	285, 333, 342
NmuCI	GTSAC	2 cut(s)	319, 800
NsiI	ATGCAT	1 cut(s)	1146
NspI	RCATGY	1 cut(s)	1144
PaqCI	CACCTGC	1 cut(s)	391
PasI	CCCWGGG	1 cut(s)	742
PciSI	GCTCTTC	1 cut(s)	546
PcsI	WCGNNNNNNNCGW	1 cut(s)	541
PfeI	GAWTC	1 cut(s)	419
PkrI	GCNGC	8 cut(s)	310, 442, 550, 652, 861, 991, 999, 1120
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Ppu21I	YACGTR	1 cut(s)	536
PshBI	ATTAAT	1 cut(s)	945
Psp124BI	GAGCTC	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	741
PspEI	GGTNACC	1 cut(s)	373
PspFI	CCCAGC	1 cut(s)	562
PspGI	CCWGG	1 cut(s)	741
PspN4I	GGNNCC	3 cut(s)	285, 333, 342
PspPI	GGNCC	1 cut(s)	710
PstNI	CAGNNNCTG	1 cut(s)	446
RsaI	GTAC	3 cut(s)	156, 511, 534
RsaNI	GTAC	3 cut(s)	155, 510, 533
RseI	CAYNNNNRTG	1 cut(s)	1143
SacI	GAGCTC	1 cut(s)	239
SapI	GCTCTTC	1 cut(s)	546
SaqAI	TTAA	4 cut(s)	159, 326, 728, 945
SatI	GCNGC	8 cut(s)	309, 441, 549, 651, 860, 990, 998, 1119
Sau3AI	GATC	2 cut(s)	448, 1063
Sau96I	GGNCC	1 cut(s)	710
ScaI	AGTACT	1 cut(s)	156
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	743
SduI	GDGCHC	4 cut(s)	32, 239, 301, 541
SfaNI	GCATC	7 cut(s)	123, 269, 368, 452, 701, 928, 976
SfcI	CTRYAG	3 cut(s)	621, 954, 1035
SinI	GGWCC	1 cut(s)	710
SmiMI	CAYNNNNRTG	1 cut(s)	1143
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SpeI	ACTAGT	1 cut(s)	95
Sse9I	AATT	6 cut(s)	138, 480, 489, 909, 1071, 1148
SsiI	CCGC	2 cut(s)	708, 998
SspI	AATATT	1 cut(s)	855
SspMI	CTAG	1 cut(s)	96
SstI	GAGCTC	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	741
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	4 cut(s)	67, 319, 529, 813
TaiI	ACGT	3 cut(s)	45, 538, 1045
TaqI	TCGA	2 cut(s)	39, 1066
TasI	AATT	6 cut(s)	138, 480, 489, 909, 1071, 1148
TatI	WGTACW	1 cut(s)	154
TauI	GCSGC	1 cut(s)	1000
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	4 cut(s)	159, 326, 728, 945
Tru9I	TTAA	4 cut(s)	159, 326, 728, 945
TscAI	CASTG	2 cut(s)	54, 999
TseFI	GTSAC	2 cut(s)	319, 800
TseI	GCWGC	7 cut(s)	308, 440, 548, 650, 859, 989, 1118
Tsp45I	GTSAC	2 cut(s)	319, 800
TspDTI	ATGAA	5 cut(s)	17, 131, 963, 1122, 1161
TspRI	CASTG	2 cut(s)	54, 999
VneI	GTGCAC	1 cut(s)	297
VpaK11BI	GGWCC	1 cut(s)	710
VspI	ATTAAT	1 cut(s)	945
XagI	CCTNNNNNAGG	1 cut(s)	957
XapI	RAATTY	2 cut(s)	489, 1148
XceI	RCATGY	1 cut(s)	1144
XspI	CTAG	1 cut(s)	96
ZraI	GACGTC	1 cut(s)	43
ZrmI	AGTACT	1 cut(s)	156
Zsp2I	ATGCAT	1 cut(s)	1146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.