Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8396387.1

Orthogroup ID

OG0005958

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1099

Gene Structure 1099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8396387.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

atgaagatcttcgtgaagactctcaaggggactcacttcgaagtcgaagtcaagcctcaggactcggttgctgatgtgaagaagtcgatagaaacttctcaaggttcggatgtatatcctgctacacaacagatgctaatccatcaaggaaaagtacttaaggatgggacgacattggaagaaaacaaagttgtggaaaatagctttgttgtgataatgttgacgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

76

Amino Acids

8.49

Weight (kDa)

6.72

Isoelectric Point (pI)

24.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02540 AT3G02540 AT3G02540
fragaria_vesca	FvH4_4g27550 FvH4_4g27550
malus_domestica	MD13G1043000.v1.1 MD16G1043900.v1.1
prunus_persica	Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309600_v2.0.a1 Prupe.1G309600_v2.0.a1
pyrus_communis	pycom13g03780 pycom16g03810
rosa_chinensis	RchiOBHm_Chr4g0435391
rosa_multiflora	Rmu_co8381849.1_g000001 Rmu_co8396387.1_g000001 Rmu_sc0001940.1_g000019
rosa_roxburghii	Rroxscaffold_5G00376630
rosa_rugosa	Rorug04G0284600
rosa_samantha	Rh4AG340200 Rh4BG348700 Rh4CG363200 Rh4DG342800
rosa_wichuraiana	Rw4G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	156
AflII	CTTAAG	1 cut(s)	158
AluBI	AGCT	1 cut(s)	204
AluI	AGCT	1 cut(s)	204
ArsI	GACNNNNNNTTYG	2 cut(s)	33, 65
Asp700I	GAANNNNTTC	1 cut(s)	8
AsuII	TTCGAA	1 cut(s)	39
AxyI	CCTNAGG	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	23
BccI	CCATC	2 cut(s)	150, 158
BfrI	CTTAAG	1 cut(s)	158
BglII	AGATCT	1 cut(s)	6
BmcAI	AGTACT	1 cut(s)	156
BmsI	GCATC	1 cut(s)	123
BpiI	GAAGAC	1 cut(s)	23
Bpu14I	TTCGAA	1 cut(s)	39
BpuEI	CTTGAG	2 cut(s)	8, 84
BsaBI	GATNNNNATC	2 cut(s)	114, 137
Bse21I	CCTNAGG	1 cut(s)	57
Bse8I	GATNNNNATC	2 cut(s)	114, 137
BseGI	GGATG	2 cut(s)	115, 169
BseJI	GATNNNNATC	2 cut(s)	114, 137
BseMII	CTCAG	1 cut(s)	71
BslFI	GGGAC	2 cut(s)	43, 181
BsmFI	GGGAC	2 cut(s)	43, 181
Bsp119I	TTCGAA	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	6
BspCNI	CTCAG	1 cut(s)	70
BspT104I	TTCGAA	1 cut(s)	39
BspTI	CTTAAG	1 cut(s)	158
BssMI	GATC	1 cut(s)	6
BstAFI	CTTAAG	1 cut(s)	158
BstBI	TTCGAA	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	115, 169
BstKTI	GATC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	6
BstV2I	GAAGAC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
Bsu36I	CCTNAGG	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	115, 169
Csp6I	GTAC	1 cut(s)	155
CviJI	RGCY	2 cut(s)	55, 204
CviKI_1	RGCY	2 cut(s)	55, 204
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Eco81I	CCTNAGG	1 cut(s)	57
FaiI	YATR	1 cut(s)	115
FaqI	GGGAC	2 cut(s)	43, 181
FokI	GGATG	2 cut(s)	122, 176
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HinfI	GANTC	3 cut(s)	19, 31, 62
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	2 cut(s)	13, 59
Hpy8I	GTNNAC	1 cut(s)	222
HpyF3I	CTNAG	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	6
LpnPI	CCDG	2 cut(s)	44, 132
LweI	GCATC	1 cut(s)	123
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	4 cut(s)	16, 28, 91, 191
MflI	RGATCY	1 cut(s)	6
MlyI	GAGTC	3 cut(s)	13, 25, 56
MnlI	CCTC	1 cut(s)	66
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	159
MspCI	CTTAAG	1 cut(s)	158
NdeII	GATC	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	8
PleI	GAGTC	3 cut(s)	13, 25, 56
PpsI	GAGTC	3 cut(s)	13, 25, 56
PsuI	RGATCY	1 cut(s)	6
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	159
Sau3AI	GATC	1 cut(s)	6
ScaI	AGTACT	1 cut(s)	156
SchI	GAGTC	3 cut(s)	13, 25, 56
SetI	ASST	2 cut(s)	106, 206
SfaNI	GCATC	1 cut(s)	123
SfuI	TTCGAA	1 cut(s)	39
SgeI	CNNG	8 cut(s)	25, 37, 64, 71, 76, 113, 131, 158
SmlI	CTYRAG	3 cut(s)	23, 99, 158
SmoI	CTYRAG	3 cut(s)	23, 99, 158
TaqI	TCGA	3 cut(s)	39, 45, 86
TatI	WGTACW	1 cut(s)	154
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TspDTI	ATGAA	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	158
XmnI	GAANNNNTTC	1 cut(s)	8
ZrmI	AGTACT	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.