Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005958

Physical Location & Seq

Genomic Coordinates Forward (+)

61994098 .. 62000485

Gene Structure 6388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG363200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGTATGTGTATATTTTGGCACAGGCACCACAGCCCAGTACACCTTCAGCTGCTCCAACTGCAACATCCGCGACACCTCACGCTCCTGTCTCAACATCAGCACCGCCGGCATCTGTTACCACGCCAGCTCCCGTCTCTTTGGCCACAACAGATTTAGATTCCTATGGCCAAGCAGCATCTGATCTAGTAGCTGGAAACAACTTGGAGGGAACAATTCAGCAAATTCTGGATATGGGTGGAGGAACCTGGGACAGGGATACTGTTGTACGTGCTCTTCGTGCTGCGTTCAACAACCCAGCTAGAGCAATTGATTACTTATATTCAGGTATCCCTGAGCAACCTGAAGCTCCTGTAGCTCGTATCCCTGTGAGTGGCGATGCTGCAAACCTTCCAGCACAACCTCCTCAATCAGCACAGCCAGCATCCACTCCTTCAACAGGACCTAATGCCAATCCTTTAGACCTCTTTCCACAGGGCCTTCCGAACCTAGGTGCTGGAGCTGGTGCGGGGGCGGGTGCGGGTGCGGGTAATCTTGATTTTCTGCGTGACAGCCCACAGTTCCAAGCCTTGCGAGCTATGGTGCAAGCTAATCCACAAATATTGCAGCCTATGCTTCAAGAGTTAGGAAAACAAAATCCTCAGCTTGTAAGGTTAATTCAACAACATCAGGCTGACTTCCTTCGCCTAATTAATGAACCTGTCGAAGGAGGAGAAGGGGATGTGTTGGGACAACTGGATGCAGCAATGCCACAGGCAATAACTGTCACTCCCGAGGAGCGTGAAGCCATAGAACGTCTTGAAGCAATGGGCTTTGATAGAGCACTTGTATTGGAGGTGTTCGTTGCCTGCAACAGGAATGAAGAATTGGCTGCAAACTATCTCTTAGATCACATGCACGAGTTTGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

303

Amino Acids

31.85

Weight (kDa)

4.33

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA	PF00627	71 - 106	1.5e-09	UBA/TS-N domain
XPC-binding	PF09280	178 - 233	2.7e-24	XPC-binding domain
UBA	PF00627	259 - 294	5.7e-10	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02540 AT3G02540 AT3G02540
fragaria_vesca	FvH4_4g27550 FvH4_4g27550
malus_domestica	MD13G1043000.v1.1 MD16G1043900.v1.1
prunus_persica	Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309400_v2.0.a1 Prupe.1G309600_v2.0.a1 Prupe.1G309600_v2.0.a1
pyrus_communis	pycom13g03780 pycom16g03810
rosa_chinensis	RchiOBHm_Chr4g0435391
rosa_multiflora	Rmu_co8381849.1_g000001 Rmu_co8396387.1_g000001 Rmu_sc0001940.1_g000019
rosa_roxburghii	Rroxscaffold_5G00376630
rosa_rugosa	Rorug04G0284600
rosa_samantha	Rh4AG340200 Rh4BG348700 Rh4CG363200 Rh4DG342800
rosa_wichuraiana	Rw4G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AccII	CGCG	1 cut(s)	71
AciI	CCGC	6 cut(s)	69, 104, 506, 512, 518, 524
AcoI	YGGCCR	2 cut(s)	141, 166
AcsI	RAATTY	1 cut(s)	222
AcuI	CTGAAG	2 cut(s)	30, 363
AfaI	GTAC	2 cut(s)	40, 267
AfiI	CCNNNNNNNGG	6 cut(s)	252, 371, 437, 488, 704, 852
AgsI	TTSAA	5 cut(s)	289, 435, 617, 659, 800
AjnI	CCWGG	1 cut(s)	245
AjuI	GAANNNNNNNTTGG	2 cut(s)	848, 880
Alw21I	GWGCWC	2 cut(s)	274, 823
Alw26I	GTCTC	2 cut(s)	94, 139
AlwNI	CAGNNNCTG	1 cut(s)	179
Ama87I	CYCGRG	1 cut(s)	770
AoxI	GGCC	3 cut(s)	141, 166, 475
ApeKI	GCWGC	7 cut(s)	50, 173, 281, 380, 604, 740, 869
ApoI	RAATTY	1 cut(s)	222
AseI	ATTAAT	1 cut(s)	690
AspA2I	CCTAGG	1 cut(s)	487
AspS9I	GGNCC	2 cut(s)	440, 475
AvaI	CYCGRG	1 cut(s)	770
AvaII	GGWCC	1 cut(s)	440
AvrII	CCTAGG	1 cut(s)	487
BaeI	ACNNNNGTAYC	2 cut(s)	249, 282
BalI	TGGCCA	2 cut(s)	143, 168
BanI	GGYRCC	1 cut(s)	25
BarI	GAAGNNNNNNTAC	2 cut(s)	258, 290
BauI	CACGAG	1 cut(s)	896
Bbv12I	GWGCWC	2 cut(s)	274, 823
BbvCI	CCTCAGC	1 cut(s)	639
BbvI	GCAGC	7 cut(s)	37, 185, 268, 367, 616, 752, 856
BciT130I	CCWGG	1 cut(s)	247
BciVI	GTATCC	3 cut(s)	250, 338, 371
BcoDI	GTCTC	2 cut(s)	94, 139
BfaI	CTAG	3 cut(s)	185, 300, 488
BfmI	CTRYAG	1 cut(s)	351
BfuI	GTATCC	3 cut(s)	250, 338, 371
BisI	GCNGC	7 cut(s)	51, 174, 282, 381, 605, 741, 870
BlnI	CCTAGG	1 cut(s)	487
BlsI	GCNGC	7 cut(s)	52, 175, 283, 382, 606, 742, 871
Bme1390I	CCNGG	1 cut(s)	247
Bme18I	GGWCC	1 cut(s)	440
BmeT110I	CYCGRG	1 cut(s)	770
BmgT120I	GGNCC	2 cut(s)	440, 475
BmiI	GGNNCC	2 cut(s)	27, 244
BmrFI	CCNGG	1 cut(s)	247
BmrI	ACTGGG	1 cut(s)	30
BmsI	GCATC	5 cut(s)	119, 185, 367, 431, 727
BmuI	ACTGGG	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	516
Bpu10I	CCTNAGC	2 cut(s)	333, 639
BsaAI	YACGTR	1 cut(s)	269
BsaJI	CCNNGG	3 cut(s)	246, 487, 771
BsaXI	ACNNNNNCTCC	4 cut(s)	112, 142, 751, 781
Bsc4I	CCNNNNNNNGG	6 cut(s)	252, 371, 437, 488, 704, 852
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	2 cut(s)	36, 738
Bse3DI	GCAATG	2 cut(s)	750, 810
BseBI	CCWGG	1 cut(s)	247
BseDI	CCNNGG	3 cut(s)	246, 487, 771
BseGI	GGATG	4 cut(s)	65, 422, 724, 742
BseLI	CCNNNNNNNGG	6 cut(s)	252, 371, 437, 488, 704, 852
BseMI	GCAATG	2 cut(s)	750, 810
BseMII	CTCAG	2 cut(s)	324, 653
BseNI	ACTGG	2 cut(s)	36, 738
BseRI	GAGGAG	3 cut(s)	393, 723, 788
BseXI	GCAGC	7 cut(s)	37, 185, 268, 367, 616, 752, 856
BseYI	CCCAGC	1 cut(s)	295
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	3 cut(s)	143, 168, 477
BshNI	GGYRCC	1 cut(s)	25
BsiHKAI	GWGCWC	2 cut(s)	274, 823
BsiHKCI	CYCGRG	1 cut(s)	770
BsiSI	CCGG	1 cut(s)	107
BslFI	GGGAC	2 cut(s)	263, 741
BslI	CCNNNNNNNGG	6 cut(s)	252, 371, 437, 488, 704, 852
BsmAI	GTCTC	2 cut(s)	94, 139
BsmBI	CGTCTC	1 cut(s)	139
BsmFI	GGGAC	2 cut(s)	263, 741
BsnI	GGCC	3 cut(s)	143, 168, 477
BsoBI	CYCGRG	1 cut(s)	770
Bsp1286I	GDGCHC	2 cut(s)	274, 823
Bsp143I	GATC	2 cut(s)	181, 886
BspACI	CCGC	6 cut(s)	69, 104, 506, 512, 518, 524
BspANI	GGCC	3 cut(s)	143, 168, 477
BspCNI	CTCAG	2 cut(s)	325, 652
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	2 cut(s)	27, 244
BspQI	GCTCTTC	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	25
BsrDI	GCAATG	2 cut(s)	750, 810
BsrFI	RCCGGY	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	36, 738
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	3 cut(s)	246, 487, 771
BssMI	GATC	2 cut(s)	181, 886
BssSI	CACGAG	1 cut(s)	896
BssT1I	CCWWGG	1 cut(s)	487
Bst2BI	CACGAG	1 cut(s)	896
Bst2UI	CCWGG	1 cut(s)	247
Bst4CI	ACNGT	3 cut(s)	262, 558, 763
Bst6I	CTCTTC	1 cut(s)	279
BstAPI	GCANNNNNTGC	1 cut(s)	610
BstBAI	YACGTR	1 cut(s)	269
BstC8I	GCNNGC	6 cut(s)	108, 126, 420, 573, 585, 847
BstDEI	CTNAG	3 cut(s)	333, 639, 883
BstENI	CCTNNNNNAGG	4 cut(s)	250, 435, 702, 850
BstF5I	GGATG	4 cut(s)	65, 422, 724, 742
BstFNI	CGCG	1 cut(s)	71
BstKTI	GATC	2 cut(s)	184, 889
BstMAI	GTCTC	2 cut(s)	94, 139
BstMBI	GATC	2 cut(s)	181, 886
BstMWI	GCNNNNNNNGC	8 cut(s)	59, 68, 107, 278, 353, 419, 572, 610
BstNI	CCWGG	1 cut(s)	247
BstNSI	RCATGY	1 cut(s)	895
BstSCI	CCNGG	1 cut(s)	245
BstSFI	CTRYAG	1 cut(s)	351
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	7 cut(s)	37, 185, 268, 367, 616, 752, 856
BsuI	GTATCC	3 cut(s)	250, 338, 371
BsuRI	GGCC	3 cut(s)	143, 168, 477
BtgZI	GCGATG	1 cut(s)	390
BtsCI	GGATG	4 cut(s)	65, 422, 724, 742
Cac8I	GCNNGC	6 cut(s)	108, 126, 420, 573, 585, 847
CaiI	CAGNNNCTG	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	440, 475
Csp6I	GTAC	2 cut(s)	39, 266
CspCI	CAANNNNNGTGG	2 cut(s)	582, 617
CviAII	CATG	1 cut(s)	892
CviQI	GTAC	2 cut(s)	39, 266
DdeI	CTNAG	3 cut(s)	333, 639, 883
DpnI	GATC	2 cut(s)	183, 888
DpnII	GATC	2 cut(s)	181, 886
EaeI	YGGCCR	2 cut(s)	141, 166
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	487
Eco47I	GGWCC	1 cut(s)	440
Eco57I	CTGAAG	2 cut(s)	30, 363
Eco88I	CYCGRG	1 cut(s)	770
EcoNI	CCTNNNNNAGG	4 cut(s)	250, 435, 702, 850
EcoO109I	RGGNCCY	2 cut(s)	440, 475
EcoRII	CCWGG	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	487
Esp3I	CGTCTC	1 cut(s)	139
FaeI	CATG	1 cut(s)	895
FaiI	YATR	9 cut(s)	6, 12, 165, 233, 319, 578, 611, 788, 893
FaqI	GGGAC	2 cut(s)	263, 741
FatI	CATG	1 cut(s)	891
FauI	CCCGC	4 cut(s)	499, 505, 511, 517
Fnu4HI	GCNGC	7 cut(s)	51, 174, 282, 381, 605, 741, 870
FokI	GGATG	4 cut(s)	52, 409, 731, 749
Fsp4HI	GCNGC	7 cut(s)	51, 174, 282, 381, 605, 741, 870
FspBI	CTAG	3 cut(s)	185, 300, 488
GluI	GCNGC	7 cut(s)	51, 174, 282, 381, 605, 741, 870
GsaI	CCCAGC	1 cut(s)	299
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	3 cut(s)	143, 168, 477
HapII	CCGG	1 cut(s)	107
Hin1II	CATG	1 cut(s)	895
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	1 cut(s)	107
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	2 cut(s)	181, 483
Hpy188III	TCNNGA	5 cut(s)	227, 533, 617, 770, 797
Hpy8I	GTNNAC	1 cut(s)	41
HpyAV	CCTTC	7 cut(s)	54, 398, 441, 488, 689, 698, 707
HpyCH4III	ACNGT	3 cut(s)	262, 558, 763
HpyCH4IV	ACGT	2 cut(s)	268, 793
HpyCH4V	TGCA	8 cut(s)	62, 383, 583, 604, 740, 849, 872, 895
HpyF10VI	GCNNNNNNNGC	8 cut(s)	59, 68, 107, 278, 353, 419, 572, 610
HpyF3I	CTNAG	3 cut(s)	333, 639, 883
HpySE526I	ACGT	2 cut(s)	268, 793
Hsp92II	CATG	1 cut(s)	895
KroI	GCCGGC	1 cut(s)	106
KroNI	GCCGGC	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	181, 886
LguI	GCTCTTC	1 cut(s)	279
LmnI	GCTCC	6 cut(s)	58, 88, 133, 352, 497, 775
Lsp1109I	GCAGC	7 cut(s)	37, 185, 268, 367, 616, 752, 856
LweI	GCATC	5 cut(s)	119, 185, 367, 431, 727
MaeI	CTAG	3 cut(s)	185, 300, 488
MaeII	ACGT	2 cut(s)	268, 793
MaeIII	GTNAC	3 cut(s)	115, 545, 763
MalI	GATC	2 cut(s)	183, 888
MboI	GATC	2 cut(s)	181, 886
MboII	GAAGA	2 cut(s)	266, 872
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	2 cut(s)	274, 823
MlsI	TGGCCA	2 cut(s)	143, 168
MluCI	AATT	6 cut(s)	213, 222, 306, 654, 687, 863
MluNI	TGGCCA	2 cut(s)	143, 168
MmeI	TCCRAC	1 cut(s)	80
Mox20I	TGGCCA	2 cut(s)	143, 168
MroNI	GCCGGC	1 cut(s)	106
MscI	TGGCCA	2 cut(s)	143, 168
MseI	TTAA	2 cut(s)	653, 690
Msp20I	TGGCCA	2 cut(s)	143, 168
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	247
MunI	CAATTG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	247
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	8 cut(s)	59, 68, 107, 278, 353, 419, 572, 610
NaeI	GCCGGC	1 cut(s)	108
NdeII	GATC	2 cut(s)	181, 886
NgoMIV	GCCGGC	1 cut(s)	106
NlaIII	CATG	1 cut(s)	895
NlaIV	GGNNCC	2 cut(s)	27, 244
NmuCI	GTSAC	2 cut(s)	545, 763
NspI	RCATGY	1 cut(s)	895
PciSI	GCTCTTC	1 cut(s)	279
PcsI	WCGNNNNNNNCGW	1 cut(s)	274
PdiI	GCCGGC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	7 cut(s)	52, 175, 283, 382, 606, 742, 871
Ppu21I	YACGTR	1 cut(s)	269
PpuMI	RGGWCCY	1 cut(s)	440
PshBI	ATTAAT	1 cut(s)	690
Psp5II	RGGWCCY	1 cut(s)	440
Psp6I	CCWGG	1 cut(s)	245
PspFI	CCCAGC	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	245
PspN4I	GGNNCC	2 cut(s)	27, 244
PspPI	GGNCC	2 cut(s)	440, 475
PspPPI	RGGWCCY	1 cut(s)	440
PstNI	CAGNNNCTG	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	2 cut(s)	40, 267
RsaNI	GTAC	2 cut(s)	39, 266
SapI	GCTCTTC	1 cut(s)	279
SaqAI	TTAA	2 cut(s)	653, 690
SatI	GCNGC	7 cut(s)	51, 174, 282, 381, 605, 741, 870
Sau3AI	GATC	2 cut(s)	181, 886
Sau96I	GGNCC	2 cut(s)	440, 475
ScrFI	CCNGG	1 cut(s)	247
SduI	GDGCHC	2 cut(s)	274, 823
SfaNI	GCATC	5 cut(s)	119, 185, 367, 431, 727
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	1 cut(s)	440
Sse9I	AATT	6 cut(s)	213, 222, 306, 654, 687, 863
SsiI	CCGC	6 cut(s)	69, 104, 506, 512, 518, 524
SspI	AATATT	1 cut(s)	600
SspMI	CTAG	3 cut(s)	185, 300, 488
StyD4I	CCNGG	1 cut(s)	245
StyI	CCWWGG	1 cut(s)	487
TaaI	ACNGT	3 cut(s)	262, 558, 763
TaiI	ACGT	2 cut(s)	271, 796
TaqI	TCGA	1 cut(s)	702
TasI	AATT	6 cut(s)	213, 222, 306, 654, 687, 863
TatI	WGTACW	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	2 cut(s)	653, 690
Tru9I	TTAA	2 cut(s)	653, 690
TseFI	GTSAC	2 cut(s)	545, 763
TseI	GCWGC	7 cut(s)	50, 173, 281, 380, 604, 740, 869
Tsp45I	GTSAC	2 cut(s)	545, 763
TspDTI	ATGAA	2 cut(s)	708, 873
VpaK11BI	GGWCC	1 cut(s)	440
VspI	ATTAAT	1 cut(s)	690
XagI	CCTNNNNNAGG	4 cut(s)	250, 435, 702, 850
XapI	RAATTY	1 cut(s)	222
XceI	RCATGY	1 cut(s)	895
XmaJI	CCTAGG	1 cut(s)	487
XspI	CTAG	3 cut(s)	185, 300, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.