DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G68990 AT1G68990 |
| fragaria_vesca | FvH4_4g28970 FvH4_4g28970 FvH4_4g28970 FvH4_4g28970 FvH4_4g28970 |
| malus_domestica | MD13G1055100.v1.1 MD16G1054000.v1.1 |
| prunus_persica | Prupe.1G295700_v2.0.a1 Prupe.1G295700_v2.0.a1 |
| pyrus_communis | pycom13g04880 pycom16g04700 |
| rosa_chinensis | RchiOBHm_Chr4g0437111 |
| rosa_laevigata | RLG00000006467 |
| rosa_multiflora | Rmu_co8109606.1_g000001 Rmu_ssc0000006.1_g000008 |
| rosa_roxburghii | Rroxscaffold_5G00378180 |
| rosa_rugosa | Rorug04G0298100 |
| rosa_samantha | Rh4AG352900 Rh4BG362400 Rh4CG376600 Rh4DG356400 |
| rosa_wichuraiana | Rw4G030900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 406 |
| Acc16I | TGCGCA | 1 cut(s) | 2231 |
| Acc36I | ACCTGC | 2 cut(s) | 406, 1108 |
| AccB1I | GGYRCC | 2 cut(s) | 1288, 1988 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2011 |
| AccI | GTMKAC | 2 cut(s) | 1060, 1932 |
| AccII | CGCG | 4 cut(s) | 449, 1952, 2367, 2417 |
| AclWI | GGATC | 6 cut(s) | 157, 1991, 2243, 2567, 2946, 2980 |
| AcoI | YGGCCR | 2 cut(s) | 450, 1735 |
| AcsI | RAATTY | 6 cut(s) | 83, 505, 1864, 1938, 2770, 2881 |
| AcuI | CTGAAG | 4 cut(s) | 965, 1575, 2055, 2615 |
| AcyI | GRCGYC | 1 cut(s) | 1794 |
| AfaI | GTAC | 7 cut(s) | 1313, 1450, 1476, 2217, 2401, 2586, 2725 |
| AflII | CTTAAG | 1 cut(s) | 1160 |
| AgsI | TTSAA | 9 cut(s) | 70, 109, 125, 1849, 1967, 2483, 2855, 2900, 2989 |
| AjnI | CCWGG | 3 cut(s) | 1797, 2088, 2210 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1841, 1873 |
| Alw21I | GWGCWC | 3 cut(s) | 1327, 2365, 2712 |
| Alw26I | GTCTC | 4 cut(s) | 422, 2054, 2377, 2940 |
| Alw44I | GTGCAC | 2 cut(s) | 2361, 2708 |
| AlwI | GGATC | 6 cut(s) | 157, 1991, 2243, 2567, 2946, 2980 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 940, 2156, 2638 |
| AoxI | GGCC | 4 cut(s) | 450, 585, 608, 1735 |
| ApaLI | GTGCAC | 2 cut(s) | 2361, 2708 |
| ApoI | RAATTY | 6 cut(s) | 83, 505, 1864, 1938, 2770, 2881 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1925, 1957 |
| AseI | ATTAAT | 3 cut(s) | 2025, 2259, 2292 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 297, 2050 |
| AspA2I | CCTAGG | 2 cut(s) | 1400, 2467 |
| AspLEI | GCGC | 5 cut(s) | 502, 743, 1380, 1432, 2232 |
| AspS9I | GGNCC | 1 cut(s) | 585 |
| AsuC2I | CCSGG | 2 cut(s) | 213, 286 |
| AsuHPI | GGTGA | 8 cut(s) | 191, 334, 430, 761, 2046, 2078, 2326, 2525 |
| AsuII | TTCGAA | 1 cut(s) | 350 |
| AvrII | CCTAGG | 2 cut(s) | 1400, 2467 |
| BaeGI | GKGCMC | 2 cut(s) | 2365, 2712 |
| BanI | GGYRCC | 2 cut(s) | 1288, 1988 |
| BauI | CACGAG | 1 cut(s) | 860 |
| BbsI | GAAGAC | 5 cut(s) | 450, 800, 1193, 1563, 1978 |
| Bbv12I | GWGCWC | 3 cut(s) | 1327, 2365, 2712 |
| BbvCI | CCTCAGC | 2 cut(s) | 255, 941 |
| BccI | CCATC | 6 cut(s) | 531, 646, 673, 1234, 2087, 2550 |
| BceAI | ACGGC | 4 cut(s) | 1266, 1518, 1722, 2693 |
| BciT130I | CCWGG | 3 cut(s) | 1799, 2090, 2212 |
| BciVI | GTATCC | 3 cut(s) | 768, 1429, 2826 |
| BclI | TGATCA | 1 cut(s) | 1108 |
| BcnI | CCSGG | 2 cut(s) | 213, 286 |
| BcoDI | GTCTC | 4 cut(s) | 422, 2054, 2377, 2940 |
| BfaI | CTAG | 8 cut(s) | 14, 612, 1401, 1503, 2280, 2448, 2468, 2992 |
| BfmI | CTRYAG | 3 cut(s) | 1101, 1674, 2535 |
| BfoI | RGCGCY | 2 cut(s) | 1381, 1433 |
| BfrI | CTTAAG | 1 cut(s) | 1160 |
| BfuAI | ACCTGC | 2 cut(s) | 406, 1108 |
| BfuI | GTATCC | 3 cut(s) | 768, 1429, 2826 |
| BlnI | CCTAGG | 2 cut(s) | 1400, 2467 |
| BlpI | GCTNAGC | 1 cut(s) | 570 |
| Bme1390I | CCNGG | 5 cut(s) | 213, 286, 1799, 2090, 2212 |
| BmgT120I | GGNCC | 1 cut(s) | 585 |
| BmiI | GGNNCC | 3 cut(s) | 1290, 1777, 1990 |
| BmrFI | CCNGG | 5 cut(s) | 213, 286, 1799, 2090, 2212 |
| BmrI | ACTGGG | 1 cut(s) | 189 |
| BmsI | GCATC | 4 cut(s) | 547, 2227, 2441, 2620 |
| BmuI | ACTGGG | 1 cut(s) | 189 |
| BpiI | GAAGAC | 5 cut(s) | 450, 800, 1193, 1563, 1978 |
| BpmI | CTGGAG | 3 cut(s) | 332, 902, 1820 |
| Bpu10I | CCTNAGC | 2 cut(s) | 255, 941 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 570 |
| Bpu14I | TTCGAA | 1 cut(s) | 350 |
| BpuEI | CTTGAG | 1 cut(s) | 446 |
| BpuMI | CCSGG | 2 cut(s) | 213, 286 |
| BsaHI | GRCGYC | 1 cut(s) | 1794 |
| BsaJI | CCNNGG | 8 cut(s) | 1025, 1400, 1732, 1950, 2128, 2211, 2467, 2569 |
| BsaWI | WCCGGW | 2 cut(s) | 2056, 2935 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 272, 302, 1189, 1219, 1877, 1907, 2870, 2900 |
| Bse118I | RCCGGY | 2 cut(s) | 587, 2595 |
| Bse1I | ACTGG | 8 cut(s) | 195, 852, 885, 1307, 1847, 2005, 2549, 2801 |
| Bse3DI | GCAATG | 3 cut(s) | 561, 810, 2270 |
| BseBI | CCWGG | 3 cut(s) | 1799, 2090, 2212 |
| BseDI | CCNNGG | 8 cut(s) | 1025, 1400, 1732, 1950, 2128, 2211, 2467, 2569 |
| BseGI | GGATG | 7 cut(s) | 349, 542, 562, 1245, 1699, 2098, 2545 |
| BseMI | GCAATG | 3 cut(s) | 561, 810, 2270 |
| BseMII | CTCAG | 7 cut(s) | 246, 423, 561, 793, 932, 2211, 2971 |
| BseNI | ACTGG | 8 cut(s) | 195, 852, 885, 1307, 1847, 2005, 2549, 2801 |
| BseRI | GAGGAG | 3 cut(s) | 293, 421, 424 |
| BseSI | GKGCMC | 2 cut(s) | 2365, 2712 |
| BseYI | CCCAGC | 2 cut(s) | 1141, 2509 |
| BsgI | GTGCAG | 2 cut(s) | 157, 1807 |
| Bsh1236I | CGCG | 4 cut(s) | 449, 1952, 2367, 2417 |
| BshFI | GGCC | 4 cut(s) | 452, 587, 610, 1737 |
| BshNI | GGYRCC | 2 cut(s) | 1288, 1988 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1327, 2365, 2712 |
| BsiSI | CCGG | 8 cut(s) | 213, 285, 575, 588, 644, 2057, 2596, 2936 |
| BslFI | GGGAC | 2 cut(s) | 1827, 2150 |
| BsmAI | GTCTC | 4 cut(s) | 422, 2054, 2377, 2940 |
| BsmFI | GGGAC | 2 cut(s) | 1827, 2150 |
| BsmI | GAATGC | 1 cut(s) | 1145 |
| BsnI | GGCC | 4 cut(s) | 452, 587, 610, 1737 |
| Bsp119I | TTCGAA | 1 cut(s) | 350 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1327, 2365, 2712 |
| Bsp1407I | TGTACA | 1 cut(s) | 2584 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 570 |
| Bsp19I | CCATGG | 1 cut(s) | 1025 |
| BspANI | GGCC | 4 cut(s) | 452, 587, 610, 1737 |
| BspCNI | CTCAG | 7 cut(s) | 247, 424, 562, 792, 933, 2210, 2970 |
| BspFNI | CGCG | 4 cut(s) | 449, 1952, 2367, 2417 |
| BspLI | GGNNCC | 3 cut(s) | 1290, 1777, 1990 |
| BspMAI | CTGCAG | 2 cut(s) | 1105, 2539 |
| BspMI | ACCTGC | 2 cut(s) | 406, 1108 |
| BspPI | GGATC | 6 cut(s) | 157, 1991, 2243, 2567, 2946, 2980 |
| BspQI | GCTCTTC | 1 cut(s) | 800 |
| BspT104I | TTCGAA | 1 cut(s) | 350 |
| BspT107I | GGYRCC | 2 cut(s) | 1288, 1988 |
| BspTI | CTTAAG | 1 cut(s) | 1160 |
| BsrDI | GCAATG | 3 cut(s) | 561, 810, 2270 |
| BsrFI | RCCGGY | 2 cut(s) | 587, 2595 |
| BsrGI | TGTACA | 1 cut(s) | 2584 |
| BsrI | ACTGG | 8 cut(s) | 195, 852, 885, 1307, 1847, 2005, 2549, 2801 |
| BssAI | RCCGGY | 2 cut(s) | 587, 2595 |
| BssECI | CCNNGG | 8 cut(s) | 1025, 1400, 1732, 1950, 2128, 2211, 2467, 2569 |
| BssNI | GRCGYC | 1 cut(s) | 1794 |
| BssSI | CACGAG | 1 cut(s) | 860 |
| BssT1I | CCWWGG | 5 cut(s) | 1025, 1400, 2128, 2467, 2569 |
| Bst2BI | CACGAG | 1 cut(s) | 860 |
| Bst2UI | CCWGG | 3 cut(s) | 1799, 2090, 2212 |
| Bst4CI | ACNGT | 6 cut(s) | 701, 847, 1820, 1977, 2306, 2326 |
| Bst6I | CTCTTC | 4 cut(s) | 288, 356, 800, 2375 |
| BstACI | GRCGYC | 1 cut(s) | 1794 |
| BstAFI | CTTAAG | 1 cut(s) | 1160 |
| BstAUI | TGTACA | 1 cut(s) | 2584 |
| BstBI | TTCGAA | 1 cut(s) | 350 |
| BstDEI | CTNAG | 9 cut(s) | 255, 432, 570, 779, 819, 941, 2197, 2837, 2957 |
| BstDSI | CCRYGG | 3 cut(s) | 1025, 1732, 1950 |
| BstEII | GGTNACC | 1 cut(s) | 215 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1965 |
| BstF5I | GGATG | 7 cut(s) | 349, 542, 562, 1245, 1699, 2098, 2545 |
| BstFNI | CGCG | 4 cut(s) | 449, 1952, 2367, 2417 |
| BstH2I | RGCGCY | 2 cut(s) | 1381, 1433 |
| BstHHI | GCGC | 5 cut(s) | 502, 743, 1380, 1432, 2232 |
| BstMAI | GTCTC | 4 cut(s) | 422, 2054, 2377, 2940 |
| BstNI | CCWGG | 3 cut(s) | 1799, 2090, 2212 |
| BstNSI | RCATGY | 2 cut(s) | 2022, 2807 |
| BstPI | GGTNACC | 1 cut(s) | 215 |
| BstSCI | CCNGG | 5 cut(s) | 211, 284, 1797, 2088, 2210 |
| BstSFI | CTRYAG | 3 cut(s) | 1101, 1674, 2535 |
| BstSLI | GKGCMC | 2 cut(s) | 2365, 2712 |
| BstUI | CGCG | 4 cut(s) | 449, 1952, 2367, 2417 |
| BstV2I | GAAGAC | 5 cut(s) | 450, 800, 1193, 1563, 1978 |
| BstX2I | RGATCY | 4 cut(s) | 149, 1996, 2248, 2972 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1302, 2556 |
| BstYI | RGATCY | 4 cut(s) | 149, 1996, 2248, 2972 |
| BsuI | GTATCC | 3 cut(s) | 768, 1429, 2826 |
| BsuRI | GGCC | 4 cut(s) | 452, 587, 610, 1737 |
| BtgI | CCRYGG | 3 cut(s) | 1025, 1732, 1950 |
| BtsCI | GGATG | 7 cut(s) | 349, 542, 562, 1245, 1699, 2098, 2545 |
| BtsIMutI | CAGTG | 7 cut(s) | 270, 706, 859, 1816, 1840, 2012, 2031 |
| BveI | ACCTGC | 2 cut(s) | 406, 1108 |
| CaiI | CAGNNNCTG | 3 cut(s) | 940, 2156, 2638 |
| CfoI | GCGC | 5 cut(s) | 502, 743, 1380, 1432, 2232 |
| Cfr10I | RCCGGY | 2 cut(s) | 587, 2595 |
| Cfr13I | GGNCC | 1 cut(s) | 585 |
| Cfr42I | CCGCGG | 1 cut(s) | 1953 |
| CseI | GACGC | 4 cut(s) | 455, 1783, 2423, 2809 |
| Csp6I | GTAC | 7 cut(s) | 1312, 1449, 1475, 2216, 2400, 2585, 2724 |
| CviQI | GTAC | 7 cut(s) | 1312, 1449, 1475, 2216, 2400, 2585, 2724 |
| DdeI | CTNAG | 9 cut(s) | 255, 432, 570, 779, 819, 941, 2197, 2837, 2957 |
| EaeI | YGGCCR | 2 cut(s) | 450, 1735 |
| Eam1104I | CTCTTC | 4 cut(s) | 288, 356, 800, 2375 |
| EarI | CTCTTC | 4 cut(s) | 288, 356, 800, 2375 |
| Eco130I | CCWWGG | 5 cut(s) | 1025, 1400, 2128, 2467, 2569 |
| Eco147I | AGGCCT | 1 cut(s) | 610 |
| Eco57I | CTGAAG | 4 cut(s) | 965, 1575, 2055, 2615 |
| Eco91I | GGTNACC | 1 cut(s) | 215 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1965 |
| EcoO65I | GGTNACC | 1 cut(s) | 215 |
| EcoRII | CCWGG | 3 cut(s) | 1797, 2088, 2210 |
| EcoT14I | CCWWGG | 5 cut(s) | 1025, 1400, 2128, 2467, 2569 |
| EcoT22I | ATGCAT | 3 cut(s) | 672, 1155, 2024 |
| ErhI | CCWWGG | 5 cut(s) | 1025, 1400, 2128, 2467, 2569 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 38, 70 |
| FaqI | GGGAC | 2 cut(s) | 1827, 2150 |
| FauI | CCCGC | 1 cut(s) | 2191 |
| FbaI | TGATCA | 1 cut(s) | 1108 |
| FblI | GTMKAC | 2 cut(s) | 1060, 1932 |
| FokI | GGATG | 7 cut(s) | 356, 549, 569, 1252, 1706, 2105, 2532 |
| FspAI | RTGCGCAY | 1 cut(s) | 2231 |
| FspBI | CTAG | 8 cut(s) | 14, 612, 1401, 1503, 2280, 2448, 2468, 2992 |
| FspI | TGCGCA | 1 cut(s) | 2231 |
| GlaI | GCGC | 5 cut(s) | 501, 742, 1379, 1431, 2231 |
| GsaI | CCCAGC | 2 cut(s) | 1145, 2513 |
| GsuI | CTGGAG | 3 cut(s) | 332, 902, 1820 |
| HaeII | RGCGCY | 2 cut(s) | 1381, 1433 |
| HaeIII | GGCC | 4 cut(s) | 452, 587, 610, 1737 |
| HapII | CCGG | 8 cut(s) | 213, 285, 575, 588, 644, 2057, 2596, 2936 |
| HgaI | GACGC | 4 cut(s) | 455, 1783, 2423, 2809 |
| HhaI | GCGC | 5 cut(s) | 502, 743, 1380, 1432, 2232 |
| Hin1I | GRCGYC | 1 cut(s) | 1794 |
| Hin6I | GCGC | 5 cut(s) | 500, 741, 1378, 1430, 2230 |
| HinP1I | GCGC | 5 cut(s) | 500, 741, 1378, 1430, 2230 |
| HincII | GTYRAC | 4 cut(s) | 1061, 1885, 2302, 2818 |
| HindII | GTYRAC | 4 cut(s) | 1061, 1885, 2302, 2818 |
| HindIII | AAGCTT | 4 cut(s) | 47, 100, 494, 2141 |
| HpaII | CCGG | 8 cut(s) | 213, 285, 575, 588, 644, 2057, 2596, 2936 |
| HphI | GGTGA | 8 cut(s) | 191, 334, 430, 761, 2046, 2078, 2326, 2525 |
| Hpy188I | TCNGA | 6 cut(s) | 292, 782, 841, 1780, 2960, 2972 |
| Hpy188III | TCNNGA | 8 cut(s) | 172, 464, 760, 1034, 1724, 1964, 2199, 2900 |
| HpyCH4III | ACNGT | 6 cut(s) | 701, 847, 1820, 1977, 2306, 2326 |
| HpyCH4IV | ACGT | 1 cut(s) | 2814 |
| HpyF3I | CTNAG | 9 cut(s) | 255, 432, 570, 779, 819, 941, 2197, 2837, 2957 |
| HpySE526I | ACGT | 1 cut(s) | 2814 |
| Hsp92I | GRCGYC | 1 cut(s) | 1794 |
| HspAI | GCGC | 5 cut(s) | 500, 741, 1378, 1430, 2230 |
| Ksp22I | TGATCA | 1 cut(s) | 1108 |
| KspI | CCGCGG | 1 cut(s) | 1953 |
| LguI | GCTCTTC | 1 cut(s) | 800 |
| LmnI | GCTCC | 8 cut(s) | 466, 625, 883, 910, 1322, 1364, 2147, 2392 |
| LweI | GCATC | 4 cut(s) | 547, 2227, 2441, 2620 |
| MaeI | CTAG | 8 cut(s) | 14, 612, 1401, 1503, 2280, 2448, 2468, 2992 |
| MaeII | ACGT | 1 cut(s) | 2814 |
| MaeIII | GTNAC | 5 cut(s) | 215, 847, 952, 2347, 2810 |
| MflI | RGATCY | 4 cut(s) | 149, 1996, 2248, 2972 |
| MhlI | GDGCHC | 3 cut(s) | 1327, 2365, 2712 |
| MlyI | GAGTC | 3 cut(s) | 290, 1390, 2912 |
| MmeI | TCCRAC | 2 cut(s) | 270, 2868 |
| Mph1103I | ATGCAT | 3 cut(s) | 672, 1155, 2024 |
| MroXI | GAANNNNTTC | 2 cut(s) | 297, 2050 |
| MslI | CAYNNNNRTG | 3 cut(s) | 2091, 2735, 2808 |
| MspA1I | CMGCKG | 5 cut(s) | 569, 1648, 1952, 2153, 2186 |
| MspCI | CTTAAG | 1 cut(s) | 1160 |
| MspI | CCGG | 8 cut(s) | 213, 285, 575, 588, 644, 2057, 2596, 2936 |
| MspR9I | CCNGG | 5 cut(s) | 213, 286, 1799, 2090, 2212 |
| Mva1269I | GAATGC | 1 cut(s) | 1145 |
| MvaI | CCWGG | 3 cut(s) | 1799, 2090, 2212 |
| MvnI | CGCG | 4 cut(s) | 449, 1952, 2367, 2417 |
| NciI | CCSGG | 2 cut(s) | 213, 286 |
| NcoI | CCATGG | 1 cut(s) | 1025 |
| NlaIV | GGNNCC | 3 cut(s) | 1290, 1777, 1990 |
| NmuCI | GTSAC | 2 cut(s) | 847, 2810 |
| NsbI | TGCGCA | 1 cut(s) | 2231 |
| NsiI | ATGCAT | 3 cut(s) | 672, 1155, 2024 |
| NspI | RCATGY | 2 cut(s) | 2022, 2807 |
| NspV | TTCGAA | 1 cut(s) | 350 |
| PaeI | GCATGC | 2 cut(s) | 2022, 2807 |
| PaqCI | CACCTGC | 1 cut(s) | 406 |
| PceI | AGGCCT | 1 cut(s) | 610 |
| PciSI | GCTCTTC | 1 cut(s) | 800 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 356 |
| PctI | GAATGC | 1 cut(s) | 1145 |
| PdmI | GAANNNNTTC | 2 cut(s) | 297, 2050 |
| PflFI | GACNNNGTC | 2 cut(s) | 1818, 2663 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2011 |
| PfoI | TCCNGGA | 1 cut(s) | 1797 |
| PleI | GAGTC | 3 cut(s) | 289, 1390, 2911 |
| PpsI | GAGTC | 3 cut(s) | 289, 1390, 2911 |
| PshBI | ATTAAT | 3 cut(s) | 2025, 2259, 2292 |
| Psp6I | CCWGG | 3 cut(s) | 1797, 2088, 2210 |
| PspEI | GGTNACC | 1 cut(s) | 215 |
| PspFI | CCCAGC | 2 cut(s) | 1141, 2509 |
| PspGI | CCWGG | 3 cut(s) | 1797, 2088, 2210 |
| PspN4I | GGNNCC | 3 cut(s) | 1290, 1777, 1990 |
| PspPI | GGNCC | 1 cut(s) | 585 |
| PstI | CTGCAG | 2 cut(s) | 1105, 2539 |
| PstNI | CAGNNNCTG | 3 cut(s) | 940, 2156, 2638 |
| PsuI | RGATCY | 4 cut(s) | 149, 1996, 2248, 2972 |
| PsyI | GACNNNGTC | 2 cut(s) | 1818, 2663 |
| PvuII | CAGCTG | 2 cut(s) | 569, 2153 |
| RsaI | GTAC | 7 cut(s) | 1313, 1450, 1476, 2217, 2401, 2586, 2725 |
| RsaNI | GTAC | 7 cut(s) | 1312, 1449, 1475, 2216, 2400, 2585, 2724 |
| RseI | CAYNNNNRTG | 3 cut(s) | 2091, 2735, 2808 |
| SacII | CCGCGG | 1 cut(s) | 1953 |
| SalI | GTCGAC | 1 cut(s) | 1059 |
| SapI | GCTCTTC | 1 cut(s) | 800 |
| Sau96I | GGNCC | 1 cut(s) | 585 |
| SchI | GAGTC | 3 cut(s) | 290, 1390, 2912 |
| ScrFI | CCNGG | 5 cut(s) | 213, 286, 1799, 2090, 2212 |
| SduI | GDGCHC | 3 cut(s) | 1327, 2365, 2712 |
| SfaNI | GCATC | 4 cut(s) | 547, 2227, 2441, 2620 |
| SfcI | CTRYAG | 3 cut(s) | 1101, 1674, 2535 |
| Sfr303I | CCGCGG | 1 cut(s) | 1953 |
| SfuI | TTCGAA | 1 cut(s) | 350 |
| SgrBI | CCGCGG | 1 cut(s) | 1953 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 2091, 2735, 2808 |
| SmlI | CTYRAG | 2 cut(s) | 425, 1160 |
| SmoI | CTYRAG | 2 cut(s) | 425, 1160 |
| SphI | GCATGC | 2 cut(s) | 2022, 2807 |
| SseBI | AGGCCT | 1 cut(s) | 610 |
| SspI | AATATT | 1 cut(s) | 2874 |
| SspMI | CTAG | 8 cut(s) | 14, 612, 1401, 1503, 2280, 2448, 2468, 2992 |
| StuI | AGGCCT | 1 cut(s) | 610 |
| StyD4I | CCNGG | 5 cut(s) | 211, 284, 1797, 2088, 2210 |
| StyI | CCWWGG | 5 cut(s) | 1025, 1400, 2128, 2467, 2569 |
| TaaI | ACNGT | 6 cut(s) | 701, 847, 1820, 1977, 2306, 2326 |
| TaiI | ACGT | 1 cut(s) | 2817 |
| TaqI | TCGA | 7 cut(s) | 350, 759, 1060, 1394, 1681, 1906, 2554 |
| TatI | WGTACW | 1 cut(s) | 2584 |
| TauI | GCSGC | 3 cut(s) | 29, 452, 643 |
| TscAI | CASTG | 7 cut(s) | 277, 706, 859, 1823, 1847, 2012, 2038 |
| TseFI | GTSAC | 2 cut(s) | 847, 2810 |
| Tsp45I | GTSAC | 2 cut(s) | 847, 2810 |
| TspDTI | ATGAA | 8 cut(s) | 24, 887, 986, 1138, 1703, 2088, 2781, 2840 |
| TspGWI | ACGGA | 5 cut(s) | 891, 1094, 1583, 1721, 1934 |
| TspRI | CASTG | 7 cut(s) | 277, 706, 859, 1823, 1847, 2012, 2038 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1818, 2663 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2011 |
| Vha464I | CTTAAG | 1 cut(s) | 1160 |
| VneI | GTGCAC | 2 cut(s) | 2361, 2708 |
| VspI | ATTAAT | 3 cut(s) | 2025, 2259, 2292 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1965 |
| XapI | RAATTY | 6 cut(s) | 83, 505, 1864, 1938, 2770, 2881 |
| XceI | RCATGY | 2 cut(s) | 2022, 2807 |
| XmaJI | CCTAGG | 2 cut(s) | 1400, 2467 |
| XmiI | GTMKAC | 2 cut(s) | 1060, 1932 |
| XmnI | GAANNNNTTC | 2 cut(s) | 297, 2050 |
| XspI | CTAG | 8 cut(s) | 14, 612, 1401, 1503, 2280, 2448, 2468, 2992 |
| Zsp2I | ATGCAT | 3 cut(s) | 672, 1155, 2024 |