DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G68990 AT1G68990 |
| fragaria_vesca | FvH4_4g28970 FvH4_4g28970 FvH4_4g28970 FvH4_4g28970 FvH4_4g28970 |
| malus_domestica | MD13G1055100.v1.1 MD16G1054000.v1.1 |
| prunus_persica | Prupe.1G295700_v2.0.a1 Prupe.1G295700_v2.0.a1 |
| pyrus_communis | pycom13g04880 pycom16g04700 |
| rosa_chinensis | RchiOBHm_Chr4g0437111 |
| rosa_laevigata | RLG00000006467 |
| rosa_multiflora | Rmu_co8109606.1_g000001 Rmu_ssc0000006.1_g000008 |
| rosa_roxburghii | Rroxscaffold_5G00378180 |
| rosa_rugosa | Rorug04G0298100 |
| rosa_samantha | Rh4AG352900 Rh4BG362400 Rh4CG376600 Rh4DG356400 |
| rosa_wichuraiana | Rw4G030900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 2363 |
| Acc16I | TGCGCA | 1 cut(s) | 2258 |
| AccB1I | GGYRCC | 1 cut(s) | 2893 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2038 |
| AccI | GTMKAC | 1 cut(s) | 661 |
| AccII | CGCG | 3 cut(s) | 1407, 2394, 2970 |
| AclWI | GGATC | 5 cut(s) | 2018, 2031, 2270, 2337, 2594 |
| AcoI | YGGCCR | 2 cut(s) | 510, 927 |
| AcsI | RAATTY | 4 cut(s) | 354, 1965, 2728, 2908 |
| AcuI | CTGAAG | 5 cut(s) | 369, 906, 1602, 2547, 2642 |
| AcyI | GRCGYC | 1 cut(s) | 2360 |
| AfaI | GTAC | 7 cut(s) | 455, 521, 1179, 1477, 1503, 2244, 2613 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 1075, 1485, 1994, 2038, 2160, 2161, 2969 |
| AflII | CTTAAG | 1 cut(s) | 1187 |
| AflIII | ACRYGT | 1 cut(s) | 540 |
| AjnI | CCWGG | 3 cut(s) | 125, 1458, 2115 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1868, 1900 |
| AleI | CACNNNNGTG | 1 cut(s) | 1675 |
| Alw21I | GWGCWC | 1 cut(s) | 2392 |
| Alw26I | GTCTC | 5 cut(s) | 482, 958, 1197, 2081, 2967 |
| Alw44I | GTGCAC | 1 cut(s) | 2388 |
| AlwI | GGATC | 5 cut(s) | 2018, 2031, 2270, 2337, 2594 |
| AoxI | GGCC | 6 cut(s) | 123, 306, 510, 927, 1455, 1537 |
| ApaLI | GTGCAC | 1 cut(s) | 2388 |
| ApoI | RAATTY | 4 cut(s) | 354, 1965, 2728, 2908 |
| AseI | ATTAAT | 3 cut(s) | 1326, 2052, 2319 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 354, 1569, 2922 |
| AspLEI | GCGC | 3 cut(s) | 2004, 2259, 2449 |
| AspS9I | GGNCC | 5 cut(s) | 631, 1151, 1332, 1456, 2478 |
| AsuC2I | CCSGG | 2 cut(s) | 343, 1336 |
| AsuHPI | GGTGA | 5 cut(s) | 203, 815, 2353, 2552, 2566 |
| AsuNHI | GCTAGC | 2 cut(s) | 556, 1529 |
| AvaII | GGWCC | 4 cut(s) | 631, 1151, 1332, 2478 |
| AxyI | CCTNAGG | 1 cut(s) | 2494 |
| BaeGI | GKGCMC | 1 cut(s) | 2392 |
| BamHI | GGATCC | 1 cut(s) | 2023 |
| BanI | GGYRCC | 1 cut(s) | 2893 |
| BbsI | GAAGAC | 3 cut(s) | 854, 1047, 1220 |
| Bbv12I | GWGCWC | 1 cut(s) | 2392 |
| BccI | CCATC | 9 cut(s) | 317, 700, 727, 1099, 1142, 1375, 1803, 2114, 2741 |
| BceAI | ACGGC | 6 cut(s) | 1128, 1524, 1859, 2460, 2651, 2720 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 293, 327 |
| BciT130I | CCWGG | 3 cut(s) | 127, 1460, 2117 |
| BciVI | GTATCC | 3 cut(s) | 822, 1456, 2853 |
| BclI | TGATCA | 3 cut(s) | 378, 685, 1135 |
| BcnI | CCSGG | 2 cut(s) | 343, 1336 |
| BcoDI | GTCTC | 5 cut(s) | 482, 958, 1197, 2081, 2967 |
| BfaI | CTAG | 6 cut(s) | 557, 1200, 1428, 1530, 2307, 3019 |
| BfmI | CTRYAG | 1 cut(s) | 1977 |
| BfoI | RGCGCY | 2 cut(s) | 2005, 2450 |
| BfrI | CTTAAG | 1 cut(s) | 1187 |
| BfuI | GTATCC | 3 cut(s) | 822, 1456, 2853 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 626 |
| BmcAI | AGTACT | 1 cut(s) | 2244 |
| Bme1390I | CCNGG | 5 cut(s) | 127, 343, 1336, 1460, 2117 |
| Bme18I | GGWCC | 4 cut(s) | 631, 1151, 1332, 2478 |
| BmgT120I | GGNCC | 5 cut(s) | 631, 1151, 1332, 1456, 2478 |
| BmiI | GGNNCC | 7 cut(s) | 70, 1317, 1804, 2025, 2428, 2752, 2895 |
| BmrFI | CCNGG | 5 cut(s) | 127, 343, 1336, 1460, 2117 |
| BmsI | GCATC | 7 cut(s) | 215, 607, 1712, 1830, 1855, 2254, 2647 |
| BmtI | GCTAGC | 2 cut(s) | 560, 1533 |
| BpiI | GAAGAC | 3 cut(s) | 854, 1047, 1220 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 320, 352, 658, 690, 1652, 1684 |
| BpmI | CTGGAG | 4 cut(s) | 506, 1113, 2067, 2924 |
| BpuEI | CTTGAG | 1 cut(s) | 84 |
| BpuMI | CCSGG | 2 cut(s) | 343, 1336 |
| BsaHI | GRCGYC | 1 cut(s) | 2360 |
| BsaJI | CCNNGG | 7 cut(s) | 303, 1052, 1458, 1759, 1816, 2155, 2596 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 323, 353, 1904, 1934, 2897, 2927 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 1075, 1485, 1994, 2038, 2160, 2161, 2969 |
| Bse118I | RCCGGY | 2 cut(s) | 2209, 2622 |
| Bse1I | ACTGG | 7 cut(s) | 489, 930, 1130, 1218, 2032, 2576, 2907 |
| Bse21I | CCTNAGG | 1 cut(s) | 2494 |
| Bse3DI | GCAATG | 4 cut(s) | 309, 621, 2266, 2297 |
| BseBI | CCWGG | 3 cut(s) | 127, 1460, 2117 |
| BseDI | CCNNGG | 7 cut(s) | 303, 1052, 1458, 1759, 1816, 2155, 2596 |
| BseGI | GGATG | 3 cut(s) | 1367, 1726, 2125 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 1075, 1485, 1994, 2038, 2160, 2161, 2969 |
| BseMI | GCAATG | 4 cut(s) | 309, 621, 2266, 2297 |
| BseMII | CTCAG | 3 cut(s) | 1938, 2238, 2998 |
| BseNI | ACTGG | 7 cut(s) | 489, 930, 1130, 1218, 2032, 2576, 2907 |
| BseRI | GAGGAG | 5 cut(s) | 40, 344, 1362, 1739, 2422 |
| BseSI | GKGCMC | 1 cut(s) | 2392 |
| BseYI | CCCAGC | 1 cut(s) | 1901 |
| BsgI | GTGCAG | 1 cut(s) | 2037 |
| Bsh1236I | CGCG | 3 cut(s) | 1407, 2394, 2970 |
| BshFI | GGCC | 6 cut(s) | 125, 308, 512, 929, 1457, 1539 |
| BshNI | GGYRCC | 1 cut(s) | 2893 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2392 |
| BsiSI | CCGG | 4 cut(s) | 342, 1335, 2210, 2623 |
| BslFI | GGGAC | 3 cut(s) | 388, 1854, 2177 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 1075, 1485, 1994, 2038, 2160, 2161, 2969 |
| BsmAI | GTCTC | 5 cut(s) | 482, 958, 1197, 2081, 2967 |
| BsmBI | CGTCTC | 1 cut(s) | 482 |
| BsmFI | GGGAC | 3 cut(s) | 388, 1854, 2177 |
| BsnI | GGCC | 6 cut(s) | 125, 308, 512, 929, 1457, 1539 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2392 |
| Bsp1407I | TGTACA | 2 cut(s) | 1177, 2611 |
| Bsp19I | CCATGG | 1 cut(s) | 1052 |
| BspANI | GGCC | 6 cut(s) | 125, 308, 512, 929, 1457, 1539 |
| BspCNI | CTCAG | 3 cut(s) | 1939, 2237, 2997 |
| BspFNI | CGCG | 3 cut(s) | 1407, 2394, 2970 |
| BspLI | GGNNCC | 7 cut(s) | 70, 1317, 1804, 2025, 2428, 2752, 2895 |
| BspMAI | CTGCAG | 1 cut(s) | 1981 |
| BspOI | GCTAGC | 2 cut(s) | 560, 1533 |
| BspPI | GGATC | 5 cut(s) | 2018, 2031, 2270, 2337, 2594 |
| BspT107I | GGYRCC | 1 cut(s) | 2893 |
| BspTI | CTTAAG | 1 cut(s) | 1187 |
| BsrDI | GCAATG | 4 cut(s) | 309, 621, 2266, 2297 |
| BsrFI | RCCGGY | 2 cut(s) | 2209, 2622 |
| BsrGI | TGTACA | 2 cut(s) | 1177, 2611 |
| BsrI | ACTGG | 7 cut(s) | 489, 930, 1130, 1218, 2032, 2576, 2907 |
| BssAI | RCCGGY | 2 cut(s) | 2209, 2622 |
| BssECI | CCNNGG | 7 cut(s) | 303, 1052, 1458, 1759, 1816, 2155, 2596 |
| BssNI | GRCGYC | 1 cut(s) | 2360 |
| BssT1I | CCWWGG | 3 cut(s) | 1052, 2155, 2596 |
| Bst2UI | CCWGG | 3 cut(s) | 127, 1460, 2117 |
| Bst4CI | ACNGT | 5 cut(s) | 257, 659, 1562, 2353, 2931 |
| Bst6I | CTCTTC | 1 cut(s) | 464 |
| BstACI | GRCGYC | 1 cut(s) | 2360 |
| BstAFI | CTTAAG | 1 cut(s) | 1187 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1006, 2303 |
| BstAUI | TGTACA | 2 cut(s) | 1177, 2611 |
| BstDEI | CTNAG | 6 cut(s) | 968, 1947, 2224, 2494, 2864, 2984 |
| BstDSI | CCRYGG | 1 cut(s) | 1052 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1992 |
| BstF5I | GGATG | 3 cut(s) | 1367, 1726, 2125 |
| BstFNI | CGCG | 3 cut(s) | 1407, 2394, 2970 |
| BstH2I | RGCGCY | 2 cut(s) | 2005, 2450 |
| BstHHI | GCGC | 3 cut(s) | 2004, 2259, 2449 |
| BstMAI | GTCTC | 5 cut(s) | 482, 958, 1197, 2081, 2967 |
| BstNI | CCWGG | 3 cut(s) | 127, 1460, 2117 |
| BstNSI | RCATGY | 5 cut(s) | 544, 2049, 2306, 2834, 2838 |
| BstSCI | CCNGG | 5 cut(s) | 125, 341, 1334, 1458, 2115 |
| BstSFI | CTRYAG | 1 cut(s) | 1977 |
| BstSLI | GKGCMC | 1 cut(s) | 2392 |
| BstUI | CGCG | 3 cut(s) | 1407, 2394, 2970 |
| BstV2I | GAAGAC | 3 cut(s) | 854, 1047, 1220 |
| BstX2I | RGATCY | 2 cut(s) | 2023, 2275 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2120, 2583 |
| BstYI | RGATCY | 2 cut(s) | 2023, 2275 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2494 |
| BsuI | GTATCC | 3 cut(s) | 822, 1456, 2853 |
| BsuRI | GGCC | 6 cut(s) | 125, 308, 512, 929, 1457, 1539 |
| BtgI | CCRYGG | 1 cut(s) | 1052 |
| BtsCI | GGATG | 3 cut(s) | 1367, 1726, 2125 |
| BtsI | GCAGTG | 1 cut(s) | 775 |
| BtsIMutI | CAGTG | 3 cut(s) | 233, 775, 2039 |
| CfoI | GCGC | 3 cut(s) | 2004, 2259, 2449 |
| Cfr10I | RCCGGY | 2 cut(s) | 2209, 2622 |
| Cfr13I | GGNCC | 5 cut(s) | 631, 1151, 1332, 1456, 2478 |
| CseI | GACGC | 1 cut(s) | 2836 |
| Csp6I | GTAC | 7 cut(s) | 454, 520, 1178, 1476, 1502, 2243, 2612 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 408, 443 |
| CviQI | GTAC | 7 cut(s) | 454, 520, 1178, 1476, 1502, 2243, 2612 |
| DdeI | CTNAG | 6 cut(s) | 968, 1947, 2224, 2494, 2864, 2984 |
| EaeI | YGGCCR | 2 cut(s) | 510, 927 |
| Eam1104I | CTCTTC | 1 cut(s) | 464 |
| EarI | CTCTTC | 1 cut(s) | 464 |
| EciI | GGCGGA | 1 cut(s) | 644 |
| Eco130I | CCWWGG | 3 cut(s) | 1052, 2155, 2596 |
| Eco47I | GGWCC | 4 cut(s) | 631, 1151, 1332, 2478 |
| Eco57I | CTGAAG | 5 cut(s) | 369, 906, 1602, 2547, 2642 |
| Eco81I | CCTNAGG | 1 cut(s) | 2494 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1992 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1456 |
| EcoRII | CCWGG | 3 cut(s) | 125, 1458, 2115 |
| EcoT14I | CCWWGG | 3 cut(s) | 1052, 2155, 2596 |
| EcoT22I | ATGCAT | 5 cut(s) | 152, 726, 2051, 2299, 2836 |
| ErhI | CCWWGG | 3 cut(s) | 1052, 2155, 2596 |
| Esp3I | CGTCTC | 1 cut(s) | 482 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 235, 267, 951, 983, 1847, 1879, 2777, 2809 |
| FaqI | GGGAC | 3 cut(s) | 388, 1854, 2177 |
| FauI | CCCGC | 1 cut(s) | 703 |
| FauNDI | CATATG | 1 cut(s) | 2380 |
| FbaI | TGATCA | 3 cut(s) | 378, 685, 1135 |
| FblI | GTMKAC | 1 cut(s) | 661 |
| FokI | GGATG | 3 cut(s) | 1354, 1733, 2132 |
| FspBI | CTAG | 6 cut(s) | 557, 1200, 1428, 1530, 2307, 3019 |
| FspI | TGCGCA | 1 cut(s) | 2258 |
| GlaI | GCGC | 3 cut(s) | 2003, 2258, 2448 |
| GsaI | CCCAGC | 1 cut(s) | 1905 |
| GsuI | CTGGAG | 4 cut(s) | 506, 1113, 2067, 2924 |
| HaeII | RGCGCY | 2 cut(s) | 2005, 2450 |
| HaeIII | GGCC | 6 cut(s) | 125, 308, 512, 929, 1457, 1539 |
| HapII | CCGG | 4 cut(s) | 342, 1335, 2210, 2623 |
| HgaI | GACGC | 1 cut(s) | 2836 |
| HhaI | GCGC | 3 cut(s) | 2004, 2259, 2449 |
| Hin1I | GRCGYC | 1 cut(s) | 2360 |
| Hin6I | GCGC | 3 cut(s) | 2002, 2257, 2447 |
| HinP1I | GCGC | 3 cut(s) | 2002, 2257, 2447 |
| HincII | GTYRAC | 3 cut(s) | 982, 1558, 2667 |
| HindII | GTYRAC | 3 cut(s) | 982, 1558, 2667 |
| HindIII | AAGCTT | 1 cut(s) | 2168 |
| HpaI | GTTAAC | 1 cut(s) | 982 |
| HpaII | CCGG | 4 cut(s) | 342, 1335, 2210, 2623 |
| HphI | GGTGA | 5 cut(s) | 203, 815, 2353, 2552, 2566 |
| HpyCH4III | ACNGT | 5 cut(s) | 257, 659, 1562, 2353, 2931 |
| HpyCH4IV | ACGT | 1 cut(s) | 2360 |
| HpyF3I | CTNAG | 6 cut(s) | 968, 1947, 2224, 2494, 2864, 2984 |
| HpySE526I | ACGT | 1 cut(s) | 2360 |
| Hsp92I | GRCGYC | 1 cut(s) | 2360 |
| HspAI | GCGC | 3 cut(s) | 2002, 2257, 2447 |
| Ksp22I | TGATCA | 3 cut(s) | 378, 685, 1135 |
| KspAI | GTTAAC | 1 cut(s) | 982 |
| LmnI | GCTCC | 5 cut(s) | 679, 1349, 1391, 2174, 2419 |
| LweI | GCATC | 7 cut(s) | 215, 607, 1712, 1830, 1855, 2254, 2647 |
| MaeI | CTAG | 6 cut(s) | 557, 1200, 1428, 1530, 2307, 3019 |
| MaeII | ACGT | 1 cut(s) | 2360 |
| MaeIII | GTNAC | 3 cut(s) | 245, 904, 2374 |
| MflI | RGATCY | 2 cut(s) | 2023, 2275 |
| MhlI | GDGCHC | 1 cut(s) | 2392 |
| MlyI | GAGTC | 4 cut(s) | 329, 410, 676, 1417 |
| MmeI | TCCRAC | 2 cut(s) | 348, 2895 |
| Mph1103I | ATGCAT | 5 cut(s) | 152, 726, 2051, 2299, 2836 |
| MroXI | GAANNNNTTC | 3 cut(s) | 354, 1569, 2922 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1292, 1675, 1959, 2118, 2762, 2835 |
| MspA1I | CMGCKG | 1 cut(s) | 1675 |
| MspCI | CTTAAG | 1 cut(s) | 1187 |
| MspI | CCGG | 4 cut(s) | 342, 1335, 2210, 2623 |
| MspR9I | CCNGG | 5 cut(s) | 127, 343, 1336, 1460, 2117 |
| MvaI | CCWGG | 3 cut(s) | 127, 1460, 2117 |
| MvnI | CGCG | 3 cut(s) | 1407, 2394, 2970 |
| NciI | CCSGG | 2 cut(s) | 343, 1336 |
| NcoI | CCATGG | 1 cut(s) | 1052 |
| NdeI | CATATG | 1 cut(s) | 2380 |
| NheI | GCTAGC | 2 cut(s) | 556, 1529 |
| NlaIV | GGNNCC | 7 cut(s) | 70, 1317, 1804, 2025, 2428, 2752, 2895 |
| NmeAIII | GCCGAG | 2 cut(s) | 328, 1841 |
| NmuCI | GTSAC | 1 cut(s) | 904 |
| NsbI | TGCGCA | 1 cut(s) | 2258 |
| NsiI | ATGCAT | 5 cut(s) | 152, 726, 2051, 2299, 2836 |
| NspI | RCATGY | 5 cut(s) | 544, 2049, 2306, 2834, 2838 |
| OliI | CACNNNNGTG | 1 cut(s) | 1675 |
| PacI | TTAATTAA | 1 cut(s) | 2319 |
| PaeI | GCATGC | 3 cut(s) | 2049, 2306, 2834 |
| PciI | ACATGT | 1 cut(s) | 540 |
| PdmI | GAANNNNTTC | 3 cut(s) | 354, 1569, 2922 |
| PflFI | GACNNNGTC | 2 cut(s) | 666, 2690 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2038 |
| PleI | GAGTC | 4 cut(s) | 329, 409, 675, 1417 |
| PpsI | GAGTC | 4 cut(s) | 329, 409, 675, 1417 |
| PscI | ACATGT | 1 cut(s) | 540 |
| PshBI | ATTAAT | 3 cut(s) | 1326, 2052, 2319 |
| Psp6I | CCWGG | 3 cut(s) | 125, 1458, 2115 |
| PspFI | CCCAGC | 1 cut(s) | 1901 |
| PspGI | CCWGG | 3 cut(s) | 125, 1458, 2115 |
| PspN4I | GGNNCC | 7 cut(s) | 70, 1317, 1804, 2025, 2428, 2752, 2895 |
| PspPI | GGNCC | 5 cut(s) | 631, 1151, 1332, 1456, 2478 |
| PstI | CTGCAG | 1 cut(s) | 1981 |
| PsuI | RGATCY | 2 cut(s) | 2023, 2275 |
| PsyI | GACNNNGTC | 2 cut(s) | 666, 2690 |
| RsaI | GTAC | 7 cut(s) | 455, 521, 1179, 1477, 1503, 2244, 2613 |
| RsaNI | GTAC | 7 cut(s) | 454, 520, 1178, 1476, 1502, 2243, 2612 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1292, 1675, 1959, 2118, 2762, 2835 |
| Sau96I | GGNCC | 5 cut(s) | 631, 1151, 1332, 1456, 2478 |
| ScaI | AGTACT | 1 cut(s) | 2244 |
| SchI | GAGTC | 4 cut(s) | 329, 410, 676, 1417 |
| ScrFI | CCNGG | 5 cut(s) | 127, 343, 1336, 1460, 2117 |
| SduI | GDGCHC | 1 cut(s) | 2392 |
| SfaNI | GCATC | 7 cut(s) | 215, 607, 1712, 1830, 1855, 2254, 2647 |
| SfcI | CTRYAG | 1 cut(s) | 1977 |
| SinI | GGWCC | 4 cut(s) | 631, 1151, 1332, 2478 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1292, 1675, 1959, 2118, 2762, 2835 |
| SmlI | CTYRAG | 2 cut(s) | 99, 1187 |
| SmoI | CTYRAG | 2 cut(s) | 99, 1187 |
| SphI | GCATGC | 3 cut(s) | 2049, 2306, 2834 |
| SspMI | CTAG | 6 cut(s) | 557, 1200, 1428, 1530, 2307, 3019 |
| StyD4I | CCNGG | 5 cut(s) | 125, 341, 1334, 1458, 2115 |
| StyI | CCWWGG | 3 cut(s) | 1052, 2155, 2596 |
| TaaI | ACNGT | 5 cut(s) | 257, 659, 1562, 2353, 2931 |
| TaiI | ACGT | 1 cut(s) | 2363 |
| TatI | WGTACW | 4 cut(s) | 453, 1177, 2242, 2611 |
| TauI | GCSGC | 3 cut(s) | 512, 629, 2459 |
| TscAI | CASTG | 3 cut(s) | 240, 775, 2039 |
| TseFI | GTSAC | 1 cut(s) | 904 |
| Tsp45I | GTSAC | 1 cut(s) | 904 |
| TspDTI | ATGAA | 6 cut(s) | 948, 1730, 1977, 2088, 2808, 2867 |
| TspGWI | ACGGA | 1 cut(s) | 506 |
| TspRI | CASTG | 3 cut(s) | 240, 775, 2039 |
| Tth111I | GACNNNGTC | 2 cut(s) | 666, 2690 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2038 |
| Vha464I | CTTAAG | 1 cut(s) | 1187 |
| VneI | GTGCAC | 1 cut(s) | 2388 |
| VpaK11BI | GGWCC | 4 cut(s) | 631, 1151, 1332, 2478 |
| VspI | ATTAAT | 3 cut(s) | 1326, 2052, 2319 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1992 |
| XapI | RAATTY | 4 cut(s) | 354, 1965, 2728, 2908 |
| XceI | RCATGY | 5 cut(s) | 544, 2049, 2306, 2834, 2838 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 62, 1076 |
| XmiI | GTMKAC | 1 cut(s) | 661 |
| XmnI | GAANNNNTTC | 3 cut(s) | 354, 1569, 2922 |
| XspI | CTAG | 6 cut(s) | 557, 1200, 1428, 1530, 2307, 3019 |
| ZraI | GACGTC | 1 cut(s) | 2361 |
| ZrmI | AGTACT | 1 cut(s) | 2244 |
| Zsp2I | ATGCAT | 5 cut(s) | 152, 726, 2051, 2299, 2836 |