Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000006.1

Orthogroup ID

OG0007623

Physical Location & Seq

Genomic Coordinates Forward (+)

26212 .. 33185

Gene Structure 6974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000006.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3030 bp

atgtggagaaccctagccaagcaagctgcttcttcttcttcttcttcttcaacaaagaccaagcttttctctccctctccattcagctctgctctgaaccttgctcaagaatcgagctttctggggaaaagcaggcattttgaggctcgcgtctgcacaaatcatgggtcttcgttaatgggtttaggccaggttggtggtgcatcgtcccagaaagacggattgggcagacccagtttgctgaacccgagttaccctcgtgggtttgggagatggtatgctacttctgccgaggctattgcttccacggatgaggaatctgggtctgaagagattcaggaaatgctggaggatttggtgagggagaacaaggtggagtcgcatttgaggcagcccaagaggttggttaatggaatgggagcaggaaagtacggcattctgagaaagaggcagttaaaaattgagactgaggcttgggaagatgcggcgaaagagtaccaggagcttttggctgatatgtgtgagcagaagctggcgcccaatttgccttatgtgaagtcattgtttctggggtggtttgagccattgagggatgccattgccgccgagcccgccacttgggccggtaagagggtgcatatcagacccagccatgctccattcttcgaactgttgccgcccgataagatggctgttattacaatgcataagttgatggggctgttgatgaccaacagtggtggagttgggtctgtcaaggtggttcaagctgcttgtgcaattggtgaagctcttgagaatgaggttaagatacacagatttttggagaagacaaagaagaagagcattgctattaagaaacctgaagctgaatctgatattgtgaccaatgaacaagagaaacttaccaacgaacaggagcaagagaaactaaccaaagaacaggagctagaaaaactaaccaaagaacaaagactgaggaaaaaggttacaaagttgctaaaaatgcagaagcttcagcgagtaaaggaaattgtgaaggaacaagacggcttaaagccatggggtcaagaagctcatgttaaggtcggctgtcgattgattcagttaatgatggaaacagcttatatacaacctgcacttgatcaattaggagatgctccgcctgatattcgcccggcattcgtgcatacccttaagactataactaaagaggcacagaagaccaacaggagatatggtgttattgaatgcgacccattagttcgcaaagggatggagaaaacagcaaggcacatggtcattccttatatgccaatgttggtgcctccacttaactggacagggtatgataaaggagcatatttattcttaccatcctatgttatgcgaactcatggagcgaaacaacagcgccaagttgttaaatcaactcctaggaagcaattagaacctgtttatgaggccctggatactcttgggaataccaaatggaggataaacagaagggtacttggtgtagtggacaggatatgggctagtggaggctgtcttgctgacttggttgaccgtgaagatgttcctttgcctgaagagccagacacagaagatgaggcagaaatgagaaaatggaaatggaaagttaaagctgtgaaaaagaagaatagtgagaggcactcacagcgttgtgatacagaacttaaactttctgtagctcgaaagatgaaggatgaggaaggcttctactatccgcacaatcttgatttccgtggtcgtgcctaccccatgcacccatatctaaaccatcttggttccgatatgtgcagaggcatcctggagttcgcagagggacgtcgtcttggaaaatctggcttacgctggttgaagatacatctggcaaatttatatgctggtggagttgacaagctctcctatgatgatcgagtagcatttacggaaaaccatgtagacgaaatttttgattgcgcagacagacctcttgaaggaaggcgttggtggttgggtgcggaagatcctttccaatgcttggcagcatgcattaatctcactgaagcattgagaagcccctcaccggagactaccatttctcatatgcctgttcaccaggatggttcatgtaatggtttacaacactatgctgccctcggaagggacaagcttggagcagctgctgtaaatcttgttgggggagagaaaccggctgatgtttactcaggaattgctgccagggtactcaatataatgcgcacagatgcagagaaagatccagctagtagtccaacttcattgcacgctaggcttttaattaatgaggtcgatcgtaaattagtgaagcagacagttatgacctctgtatatggtgttacttatattggtgcacgcgatcaaattaagaagagattaaaggagcgtggtaccatagcagatgacgcgatgctgtttgccgcatcttgctatgctgctagaaccaccttgactgccctaggagagatgtttgaagctgcaagaagtattatgagttggcttggtgaatgtgcgaaggtgatagctgcagagaatcatccagttcgatggaccacaccccttggacttcctgttgtacaaccataccgccaattaggaaggcatcttattaagacttcccttcaggtgctgacattacagagagaaaccgacaaggtcatggttaaacggcagaggacagcctttccccccaattttgtccactccctggatggatcccacatgatgatgactgctcttgcctgcaagaaggcaggcttaaattttgcaggagtacatgattcatattggacgcatgcaagtgacgtcgacgaaatgaataggatactgagagaaaagtttgttgaactctacgagagaccaatactggagaatttgttggagagctttcaaaagtctttccccaccattaattttcctcccttaccggatcgcggagactttgatctcagacaggttctcggatctacttatttcttcaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

1009

Amino Acids

113.79

Weight (kDa)

9.03

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68990 AT1G68990
fragaria_vesca	FvH4_4g28970 FvH4_4g28970 FvH4_4g28970 FvH4_4g28970 FvH4_4g28970
malus_domestica	MD13G1055100.v1.1 MD16G1054000.v1.1
prunus_persica	Prupe.1G295700_v2.0.a1 Prupe.1G295700_v2.0.a1
pyrus_communis	pycom13g04880 pycom16g04700
rosa_chinensis	RchiOBHm_Chr4g0437111
rosa_laevigata	RLG00000006467
rosa_multiflora	Rmu_co8109606.1_g000001 Rmu_ssc0000006.1_g000008
rosa_roxburghii	Rroxscaffold_5G00378180
rosa_rugosa	Rorug04G0298100
rosa_samantha	Rh4AG352900 Rh4BG362400 Rh4CG376600 Rh4DG356400
rosa_wichuraiana	Rw4G030900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	1855, 2853
Acc16I	TGCGCA	2 cut(s)	1987, 2267
Acc36I	ACCTGC	1 cut(s)	1144
Acc65I	GGTACC	1 cut(s)	2435
AccB1I	GGYRCC	3 cut(s)	535, 1324, 2435
AccB7I	CCANNNNNTGG	2 cut(s)	2047, 2752
AccI	GTMKAC	2 cut(s)	1968, 2853
AccII	CGCG	4 cut(s)	150, 2403, 2453, 2979
AclWI	GGATC	6 cut(s)	2027, 2279, 2754, 2767, 2982, 3016
AcsI	RAATTY	4 cut(s)	1900, 1974, 2806, 2917
AcuI	CTGAAG	6 cut(s)	348, 885, 1001, 1611, 2091, 2651
AcyI	GRCGYC	3 cut(s)	536, 1852, 2850
AfaI	GTAC	7 cut(s)	431, 497, 1512, 2253, 2437, 2622, 2820
AflII	CTTAAG	1 cut(s)	1196
AgsI	TTSAA	9 cut(s)	51, 767, 1250, 1885, 2003, 2519, 2891, 2936, 3025
AjnI	CCWGG	7 cut(s)	189, 498, 1467, 1833, 2124, 2246, 2751
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
Alw21I	GWGCWC	1 cut(s)	2401
Alw26I	GTCTC	4 cut(s)	458, 2090, 2896, 2976
Alw44I	GTGCAC	1 cut(s)	2397
AlwI	GGATC	6 cut(s)	2027, 2279, 2754, 2767, 2982, 3016
AlwNI	CAGNNNCTG	3 cut(s)	532, 2192, 2674
Ama87I	CYCGRG	1 cut(s)	247
AoxI	GGCC	3 cut(s)	187, 621, 1464
ApaLI	GTGCAC	1 cut(s)	2397
ApoI	RAATTY	4 cut(s)	1900, 1974, 2806, 2917
ArsI	GACNNNNNNTTYG	4 cut(s)	152, 184, 1961, 1993
AseI	ATTAAT	3 cut(s)	2061, 2328, 2955
Asp700I	GAANNNNTTC	2 cut(s)	333, 1578
Asp718I	GGTACC	1 cut(s)	2435
AspA2I	CCTAGG	2 cut(s)	1436, 2503
AspLEI	GCGC	4 cut(s)	538, 1416, 1988, 2268
AspS9I	GGNCC	3 cut(s)	621, 1465, 2595
AsuC2I	CCSGG	1 cut(s)	1178
AsuHPI	GGTGA	6 cut(s)	370, 797, 2082, 2114, 2561, 2575
AsuII	TTCGAA	1 cut(s)	666
AvaI	CYCGRG	1 cut(s)	247
AvaII	GGWCC	1 cut(s)	2595
AvrII	CCTAGG	2 cut(s)	1436, 2503
BaeGI	GKGCMC	1 cut(s)	2401
BamHI	GGATCC	1 cut(s)	2759
BanI	GGYRCC	3 cut(s)	535, 1324, 2435
BanII	GRGCYC	1 cut(s)	612
BarI	GAAGNNNNNNTAC	2 cut(s)	2287, 2319
BauI	CACGAG	1 cut(s)	258
BbsI	GAAGAC	3 cut(s)	162, 836, 1229
Bbv12I	GWGCWC	1 cut(s)	2401
BceAI	ACGGC	3 cut(s)	448, 1066, 2729
BcgI	CGANNNNNNTGC	2 cut(s)	281, 315
BciT130I	CCWGG	7 cut(s)	191, 500, 1469, 1835, 2126, 2248, 2753
BciVI	GTATCC	2 cut(s)	1465, 2862
BclI	TGATCA	1 cut(s)	1144
BcnI	CCSGG	1 cut(s)	1178
BcoDI	GTCTC	4 cut(s)	458, 2090, 2896, 2976
BfaI	CTAG	9 cut(s)	14, 950, 1437, 1539, 2292, 2316, 2484, 2504, 3028
BfmI	CTRYAG	2 cut(s)	1710, 2571
BfoI	RGCGCY	2 cut(s)	539, 1417
BfrI	CTTAAG	1 cut(s)	1196
BfuAI	ACCTGC	1 cut(s)	1144
BfuI	GTATCC	2 cut(s)	1465, 2862
BglI	GCCNNNNNGGC	1 cut(s)	620
BlnI	CCTAGG	2 cut(s)	1436, 2503
Bme1390I	CCNGG	8 cut(s)	191, 500, 1178, 1469, 1835, 2126, 2248, 2753
Bme18I	GGWCC	1 cut(s)	2595
BmeT110I	CYCGRG	1 cut(s)	247
BmgT120I	GGNCC	3 cut(s)	621, 1465, 2595
BmiI	GGNNCC	5 cut(s)	537, 1326, 1813, 2437, 2761
BmrFI	CCNGG	8 cut(s)	191, 500, 1178, 1469, 1835, 2126, 2248, 2753
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	9 cut(s)	212, 472, 583, 1147, 1839, 2263, 2445, 2477, 2656
BmuI	ACTGGG	1 cut(s)	228
BpiI	GAAGAC	3 cut(s)	162, 836, 1229
BplI	GAGNNNNNCTC	4 cut(s)	241, 273, 1661, 1693
BpmI	CTGGAG	3 cut(s)	368, 1856, 2933
Bpu14I	TTCGAA	1 cut(s)	666
BpuEI	CTTGAG	2 cut(s)	90, 815
BpuMI	CCSGG	1 cut(s)	1178
BsaHI	GRCGYC	3 cut(s)	536, 1852, 2850
BsaI	GGTCTC	1 cut(s)	2896
BsaWI	WCCGGW	2 cut(s)	2092, 2971
BsaXI	ACNNNNNCTCC	6 cut(s)	1225, 1255, 1913, 1943, 2906, 2936
Bse118I	RCCGGY	2 cut(s)	623, 2218
Bse1I	ACTGG	4 cut(s)	234, 1343, 2585, 2916
Bse3DI	GCAATG	3 cut(s)	597, 846, 2306
BseBI	CCWGG	7 cut(s)	191, 500, 1469, 1835, 2126, 2248, 2753
BseGI	GGATG	9 cut(s)	316, 598, 1281, 1376, 1735, 1830, 2134, 2581, 2761
BseMI	GCAATG	3 cut(s)	597, 846, 2306
BseMII	CTCAG	6 cut(s)	431, 459, 968, 2247, 2864, 3007
BseNI	ACTGG	4 cut(s)	234, 1343, 2585, 2916
BseSI	GKGCMC	1 cut(s)	2401
BseYI	CCCAGC	1 cut(s)	647
BsgI	GTGCAG	3 cut(s)	139, 1122, 1843
Bsh1236I	CGCG	4 cut(s)	150, 2403, 2453, 2979
Bsh1285I	CGRYCG	1 cut(s)	2341
BshFI	GGCC	3 cut(s)	189, 623, 1466
BshNI	GGYRCC	3 cut(s)	535, 1324, 2435
BsiEI	CGRYCG	1 cut(s)	2341
BsiHKAI	GWGCWC	1 cut(s)	2401
BsiHKCI	CYCGRG	1 cut(s)	247
BsiSI	CCGG	5 cut(s)	624, 1178, 2093, 2219, 2972
BslFI	GGGAC	3 cut(s)	193, 1863, 2186
BsmAI	GTCTC	4 cut(s)	458, 2090, 2896, 2976
BsmFI	GGGAC	3 cut(s)	193, 1863, 2186
BsmI	GAATGC	3 cut(s)	435, 1181, 1256
BsnI	GGCC	3 cut(s)	189, 623, 1466
Bso31I	GGTCTC	1 cut(s)	2896
BsoBI	CYCGRG	1 cut(s)	247
Bsp119I	TTCGAA	1 cut(s)	666
Bsp1286I	GDGCHC	2 cut(s)	612, 2401
Bsp1407I	TGTACA	1 cut(s)	2620
Bsp19I	CCATGG	1 cut(s)	1061
BspANI	GGCC	3 cut(s)	189, 623, 1466
BspCNI	CTCAG	6 cut(s)	432, 460, 969, 2246, 2865, 3006
BspFNI	CGCG	4 cut(s)	150, 2403, 2453, 2979
BspLI	GGNNCC	5 cut(s)	537, 1326, 1813, 2437, 2761
BspMAI	CTGCAG	1 cut(s)	2575
BspMI	ACCTGC	1 cut(s)	1144
BspPI	GGATC	6 cut(s)	2027, 2279, 2754, 2767, 2982, 3016
BspQI	GCTCTTC	2 cut(s)	836, 1587
BspT104I	TTCGAA	1 cut(s)	666
BspT107I	GGYRCC	3 cut(s)	535, 1324, 2435
BspTI	CTTAAG	1 cut(s)	1196
BspTNI	GGTCTC	1 cut(s)	2896
BsrDI	GCAATG	3 cut(s)	597, 846, 2306
BsrFI	RCCGGY	2 cut(s)	623, 2218
BsrGI	TGTACA	1 cut(s)	2620
BsrI	ACTGG	4 cut(s)	234, 1343, 2585, 2916
BssAI	RCCGGY	2 cut(s)	623, 2218
BssNI	GRCGYC	3 cut(s)	536, 1852, 2850
BssSI	CACGAG	1 cut(s)	258
BssT1I	CCWWGG	4 cut(s)	1061, 1436, 2503, 2605
Bst2BI	CACGAG	1 cut(s)	258
Bst2UI	CCWGG	7 cut(s)	191, 500, 1469, 1835, 2126, 2248, 2753
Bst4CI	ACNGT	4 cut(s)	672, 737, 1571, 2362
Bst6I	CTCTTC	4 cut(s)	324, 836, 1587, 2411
BstACI	GRCGYC	3 cut(s)	536, 1852, 2850
BstAFI	CTTAAG	1 cut(s)	1196
BstAUI	TGTACA	1 cut(s)	2620
BstBI	TTCGAA	1 cut(s)	666
BstDEI	CTNAG	6 cut(s)	440, 468, 977, 2233, 2873, 2993
BstDSI	CCRYGG	3 cut(s)	306, 1061, 1768
BstENI	CCTNNNNNAGG	1 cut(s)	2001
BstF5I	GGATG	9 cut(s)	316, 598, 1281, 1376, 1735, 1830, 2134, 2581, 2761
BstFNI	CGCG	4 cut(s)	150, 2403, 2453, 2979
BstH2I	RGCGCY	2 cut(s)	539, 1417
BstHHI	GCGC	4 cut(s)	538, 1416, 1988, 2268
BstMAI	GTCTC	4 cut(s)	458, 2090, 2896, 2976
BstMCI	CGRYCG	1 cut(s)	2341
BstNI	CCWGG	7 cut(s)	191, 500, 1469, 1835, 2126, 2248, 2753
BstNSI	RCATGY	2 cut(s)	2058, 2843
BstSCI	CCNGG	8 cut(s)	189, 498, 1176, 1467, 1833, 2124, 2246, 2751
BstSFI	CTRYAG	2 cut(s)	1710, 2571
BstSLI	GKGCMC	1 cut(s)	2401
BstUI	CGCG	4 cut(s)	150, 2403, 2453, 2979
BstV2I	GAAGAC	3 cut(s)	162, 836, 1229
BstX2I	RGATCY	4 cut(s)	2032, 2284, 2759, 3008
BstXI	CCANNNNNNTGG	4 cut(s)	197, 403, 1338, 2592
BstYI	RGATCY	4 cut(s)	2032, 2284, 2759, 3008
BsuI	GTATCC	2 cut(s)	1465, 2862
BsuRI	GGCC	3 cut(s)	189, 623, 1466
BtgI	CCRYGG	3 cut(s)	306, 1061, 1768
BtgZI	GCGATG	1 cut(s)	2468
BtsCI	GGATG	9 cut(s)	316, 598, 1281, 1376, 1735, 1830, 2134, 2581, 2761
BtsIMutI	CAGTG	2 cut(s)	742, 2067
BveI	ACCTGC	1 cut(s)	1144
CaiI	CAGNNNCTG	3 cut(s)	532, 2192, 2674
CfoI	GCGC	4 cut(s)	538, 1416, 1988, 2268
Cfr10I	RCCGGY	2 cut(s)	623, 2218
Cfr13I	GGNCC	3 cut(s)	621, 1465, 2595
CseI	GACGC	3 cut(s)	139, 2459, 2845
Csp6I	GTAC	7 cut(s)	430, 496, 1511, 2252, 2436, 2621, 2819
CspCI	CAANNNNNGTGG	4 cut(s)	721, 756, 2587, 2622
CviQI	GTAC	7 cut(s)	430, 496, 1511, 2252, 2436, 2621, 2819
DdeI	CTNAG	6 cut(s)	440, 468, 977, 2233, 2873, 2993
DinI	GGCGCC	1 cut(s)	537
Eam1104I	CTCTTC	4 cut(s)	324, 836, 1587, 2411
EarI	CTCTTC	4 cut(s)	324, 836, 1587, 2411
EciI	GGCGGA	1 cut(s)	1152
Eco130I	CCWWGG	4 cut(s)	1061, 1436, 2503, 2605
Eco24I	GRGCYC	1 cut(s)	612
Eco31I	GGTCTC	1 cut(s)	2896
Eco47I	GGWCC	1 cut(s)	2595
Eco57I	CTGAAG	6 cut(s)	348, 885, 1001, 1611, 2091, 2651
Eco88I	CYCGRG	1 cut(s)	247
EcoNI	CCTNNNNNAGG	1 cut(s)	2001
EcoO109I	RGGNCCY	1 cut(s)	1465
EcoRII	CCWGG	7 cut(s)	189, 498, 1467, 1833, 2124, 2246, 2751
EcoT14I	CCWWGG	4 cut(s)	1061, 1436, 2503, 2605
EcoT22I	ATGCAT	2 cut(s)	708, 2060
EcoT38I	GRGCYC	1 cut(s)	612
EgeI	GGCGCC	1 cut(s)	537
EheI	GGCGCC	1 cut(s)	537
ErhI	CCWWGG	4 cut(s)	1061, 1436, 2503, 2605
FalI	AAGNNNNNCTT	4 cut(s)	888, 920, 2786, 2818
FaqI	GGGAC	3 cut(s)	193, 1863, 2186
FauI	CCCGC	1 cut(s)	619
FauNDI	CATATG	1 cut(s)	2112
FbaI	TGATCA	1 cut(s)	1144
FblI	GTMKAC	2 cut(s)	1968, 2853
FokI	GGATG	9 cut(s)	323, 605, 1288, 1363, 1742, 1817, 2141, 2568, 2768
FriOI	GRGCYC	1 cut(s)	612
FspAI	RTGCGCAY	1 cut(s)	2267
FspBI	CTAG	9 cut(s)	14, 950, 1437, 1539, 2292, 2316, 2484, 2504, 3028
FspI	TGCGCA	2 cut(s)	1987, 2267
GlaI	GCGC	4 cut(s)	537, 1415, 1987, 2267
GsaI	CCCAGC	1 cut(s)	651
GsuI	CTGGAG	3 cut(s)	368, 1856, 2933
HaeII	RGCGCY	2 cut(s)	539, 1417
HaeIII	GGCC	3 cut(s)	189, 623, 1466
HapII	CCGG	5 cut(s)	624, 1178, 2093, 2219, 2972
HgaI	GACGC	3 cut(s)	139, 2459, 2845
HhaI	GCGC	4 cut(s)	538, 1416, 1988, 2268
Hin1I	GRCGYC	3 cut(s)	536, 1852, 2850
Hin6I	GCGC	4 cut(s)	536, 1414, 1986, 2266
HinP1I	GCGC	4 cut(s)	536, 1414, 1986, 2266
HincII	GTYRAC	3 cut(s)	1567, 1921, 2854
HindII	GTYRAC	3 cut(s)	1567, 1921, 2854
HindIII	AAGCTT	3 cut(s)	62, 1013, 2177
HinfI	GANTC	8 cut(s)	110, 317, 334, 377, 872, 1102, 2578, 2825
HpaII	CCGG	5 cut(s)	624, 1178, 2093, 2219, 2972
HphI	GGTGA	6 cut(s)	370, 797, 2082, 2114, 2561, 2575
Hpy188I	TCNGA	9 cut(s)	96, 328, 441, 644, 877, 1816, 2168, 2996, 3008
Hpy188III	TCNNGA	7 cut(s)	107, 338, 794, 1070, 1760, 2000, 2235
Hpy99I	CGWCG	3 cut(s)	1857, 2855, 2858
HpyCH4III	ACNGT	4 cut(s)	672, 737, 1571, 2362
HpyCH4IV	ACGT	2 cut(s)	1852, 2850
HpyF3I	CTNAG	6 cut(s)	440, 468, 977, 2233, 2873, 2993
HpySE526I	ACGT	2 cut(s)	1852, 2850
Hsp92I	GRCGYC	3 cut(s)	536, 1852, 2850
HspAI	GCGC	4 cut(s)	536, 1414, 1986, 2266
KasI	GGCGCC	1 cut(s)	535
KpnI	GGTACC	1 cut(s)	2439
Ksp22I	TGATCA	1 cut(s)	1144
LguI	GCTCTTC	2 cut(s)	836, 1587
LweI	GCATC	9 cut(s)	212, 472, 583, 1147, 1839, 2263, 2445, 2477, 2656
MaeI	CTAG	9 cut(s)	14, 950, 1437, 1539, 2292, 2316, 2484, 2504, 3028
MaeII	ACGT	2 cut(s)	1852, 2850
MaeIII	GTNAC	5 cut(s)	251, 883, 988, 2383, 2846
MfeI	CAATTG	1 cut(s)	780
MflI	RGATCY	4 cut(s)	2032, 2284, 2759, 3008
MhlI	GDGCHC	2 cut(s)	612, 2401
Mly113I	GGCGCC	1 cut(s)	536
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	2 cut(s)	2324, 2904
Mph1103I	ATGCAT	2 cut(s)	708, 2060
MroXI	GAANNNNTTC	2 cut(s)	333, 1578
MslI	CAYNNNNRTG	3 cut(s)	2127, 2771, 2844
MspA1I	CMGCKG	1 cut(s)	2189
MspCI	CTTAAG	1 cut(s)	1196
MspI	CCGG	5 cut(s)	624, 1178, 2093, 2219, 2972
MspR9I	CCNGG	8 cut(s)	191, 500, 1178, 1469, 1835, 2126, 2248, 2753
MunI	CAATTG	1 cut(s)	780
Mva1269I	GAATGC	3 cut(s)	435, 1181, 1256
MvaI	CCWGG	7 cut(s)	191, 500, 1469, 1835, 2126, 2248, 2753
MvnI	CGCG	4 cut(s)	150, 2403, 2453, 2979
NarI	GGCGCC	1 cut(s)	536
NciI	CCSGG	1 cut(s)	1178
NcoI	CCATGG	1 cut(s)	1061
NdeI	CATATG	1 cut(s)	2112
NlaIV	GGNNCC	5 cut(s)	537, 1326, 1813, 2437, 2761
NmeAIII	GCCGAG	2 cut(s)	316, 631
NmuCI	GTSAC	2 cut(s)	883, 2846
NsbI	TGCGCA	2 cut(s)	1987, 2267
NsiI	ATGCAT	2 cut(s)	708, 2060
NspI	RCATGY	2 cut(s)	2058, 2843
NspV	TTCGAA	1 cut(s)	666
PacI	TTAATTAA	1 cut(s)	2328
PaeI	GCATGC	2 cut(s)	2058, 2843
PciSI	GCTCTTC	2 cut(s)	836, 1587
PctI	GAATGC	3 cut(s)	435, 1181, 1256
PdmI	GAANNNNTTC	2 cut(s)	333, 1578
PfeI	GAWTC	7 cut(s)	110, 317, 334, 872, 1102, 2578, 2825
PflFI	GACNNNGTC	2 cut(s)	1854, 2699
PflMI	CCANNNNNTGG	2 cut(s)	2047, 2752
PfoI	TCCNGGA	1 cut(s)	1833
Ple19I	CGATCG	1 cut(s)	2341
PleI	GAGTC	1 cut(s)	385
PluTI	GGCGCC	1 cut(s)	539
PpsI	GAGTC	1 cut(s)	385
PshBI	ATTAAT	3 cut(s)	2061, 2328, 2955
Psp6I	CCWGG	7 cut(s)	189, 498, 1467, 1833, 2124, 2246, 2751
PspFI	CCCAGC	1 cut(s)	647
PspGI	CCWGG	7 cut(s)	189, 498, 1467, 1833, 2124, 2246, 2751
PspN4I	GGNNCC	5 cut(s)	537, 1326, 1813, 2437, 2761
PspPI	GGNCC	3 cut(s)	621, 1465, 2595
PsrI	GAACNNNNNNTAC	2 cut(s)	236, 268
PstI	CTGCAG	1 cut(s)	2575
PstNI	CAGNNNCTG	3 cut(s)	532, 2192, 2674
PsuI	RGATCY	4 cut(s)	2032, 2284, 2759, 3008
PsyI	GACNNNGTC	2 cut(s)	1854, 2699
PvuI	CGATCG	1 cut(s)	2341
PvuII	CAGCTG	1 cut(s)	2189
RsaI	GTAC	7 cut(s)	431, 497, 1512, 2253, 2437, 2622, 2820
RsaNI	GTAC	7 cut(s)	430, 496, 1511, 2252, 2436, 2621, 2819
RseI	CAYNNNNRTG	3 cut(s)	2127, 2771, 2844
SalI	GTCGAC	1 cut(s)	2852
SapI	GCTCTTC	2 cut(s)	836, 1587
Sau96I	GGNCC	3 cut(s)	621, 1465, 2595
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	8 cut(s)	191, 500, 1178, 1469, 1835, 2126, 2248, 2753
SduI	GDGCHC	2 cut(s)	612, 2401
SfaNI	GCATC	9 cut(s)	212, 472, 583, 1147, 1839, 2263, 2445, 2477, 2656
SfcI	CTRYAG	2 cut(s)	1710, 2571
SfoI	GGCGCC	1 cut(s)	537
SfuI	TTCGAA	1 cut(s)	666
SgrDI	CGTCGACG	1 cut(s)	2852
SinI	GGWCC	1 cut(s)	2595
SmiMI	CAYNNNNRTG	3 cut(s)	2127, 2771, 2844
SmlI	CTYRAG	3 cut(s)	105, 794, 1196
SmoI	CTYRAG	3 cut(s)	105, 794, 1196
SphI	GCATGC	2 cut(s)	2058, 2843
SspDI	GGCGCC	1 cut(s)	535
SspMI	CTAG	9 cut(s)	14, 950, 1437, 1539, 2292, 2316, 2484, 2504, 3028
StyD4I	CCNGG	8 cut(s)	189, 498, 1176, 1467, 1833, 2124, 2246, 2751
StyI	CCWWGG	4 cut(s)	1061, 1436, 2503, 2605
TaaI	ACNGT	4 cut(s)	672, 737, 1571, 2362
TaiI	ACGT	2 cut(s)	1855, 2853
TaqI	TCGA	8 cut(s)	113, 666, 1096, 1717, 1942, 2337, 2590, 2853
TatI	WGTACW	2 cut(s)	2620, 2818
TauI	GCSGC	4 cut(s)	488, 605, 679, 2468
TfiI	GAWTC	7 cut(s)	110, 317, 334, 872, 1102, 2578, 2825
TscAI	CASTG	2 cut(s)	742, 2074
TseFI	GTSAC	2 cut(s)	883, 2846
Tsp45I	GTSAC	2 cut(s)	883, 2846
TspDTI	ATGAA	6 cut(s)	906, 1739, 2124, 2295, 2817, 2876
TspGWI	ACGGA	4 cut(s)	234, 323, 1757, 1970
TspRI	CASTG	2 cut(s)	742, 2074
Tth111I	GACNNNGTC	2 cut(s)	1854, 2699
Van91I	CCANNNNNTGG	2 cut(s)	2047, 2752
Vha464I	CTTAAG	1 cut(s)	1196
VneI	GTGCAC	1 cut(s)	2397
VpaK11BI	GGWCC	1 cut(s)	2595
VspI	ATTAAT	3 cut(s)	2061, 2328, 2955
XagI	CCTNNNNNAGG	1 cut(s)	2001
XapI	RAATTY	4 cut(s)	1900, 1974, 2806, 2917
XceI	RCATGY	2 cut(s)	2058, 2843
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2753
XmaJI	CCTAGG	2 cut(s)	1436, 2503
XmiI	GTMKAC	2 cut(s)	1968, 2853
XmnI	GAANNNNTTC	2 cut(s)	333, 1578
XspI	CTAG	9 cut(s)	14, 950, 1437, 1539, 2292, 2316, 2484, 2504, 3028
ZraI	GACGTC	2 cut(s)	1853, 2851
Zsp2I	ATGCAT	2 cut(s)	708, 2060

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.