Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8109606.1

Orthogroup ID

OG0007623

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 591

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8109606.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ccgagttaccctcgtgggtttgggagatggtatgctacttctgccgaggctattgcttccacggatgaggaatctgggtctgaagagattcaggaaatgctggaggatttggtgagggagaacaaggtggagtcgcatttgaggcagcccaagaggttggttaatggaatgggagcaggaaagtacggcattctgagaaagaggcagttaaaaattgagactgaggcttgggaagatgcggcgaaagagtaccaggagcttttggctgatatgtgtgagcagaagctggcgcccaatttgccttatgtgaagtcattgtttctggggtggtttgagccattgagggatgccattgccgccgagcccgccacttgggccggtaagagggtgcatatcagacccagccatgctccattcttcgaactgttgccgcccgataagatggctgttattacaatgcataagttgatggggctgttgatgaccaacagtggtggagttgggtctgtcaaggtggttcaagctgcttgtgcaattggtgaagctcttgagaatgaggtttgtgagcttggcattttgcttgttttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

196

Amino Acids

21.77

Weight (kDa)

5.35

Isoelectric Point (pI)

56.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68990 AT1G68990
fragaria_vesca	FvH4_4g28970 FvH4_4g28970 FvH4_4g28970 FvH4_4g28970 FvH4_4g28970
malus_domestica	MD13G1055100.v1.1 MD16G1054000.v1.1
prunus_persica	Prupe.1G295700_v2.0.a1 Prupe.1G295700_v2.0.a1
pyrus_communis	pycom13g04880 pycom16g04700
rosa_chinensis	RchiOBHm_Chr4g0437111
rosa_laevigata	RLG00000006467
rosa_multiflora	Rmu_co8109606.1_g000001 Rmu_ssc0000006.1_g000008
rosa_roxburghii	Rroxscaffold_5G00378180
rosa_rugosa	Rorug04G0298100
rosa_samantha	Rh4AG352900 Rh4BG362400 Rh4CG376600 Rh4DG356400
rosa_wichuraiana	Rw4G030900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	289
AciI	CCGC	4 cut(s)	239, 357, 366, 431
AcuI	CTGAAG	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	290
AfaI	GTAC	2 cut(s)	185, 251
AfiI	CCNNNNNNNGG	2 cut(s)	372, 384
AgsI	TTSAA	1 cut(s)	521
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	5 cut(s)	259, 286, 524, 545, 568
AluI	AGCT	5 cut(s)	259, 286, 524, 545, 568
Alw26I	GTCTC	1 cut(s)	212
AlwNI	CAGNNNCTG	1 cut(s)	286
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	2 cut(s)	145, 524
Asp700I	GAANNNNTTC	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	1 cut(s)	375
AsuHPI	GGTGA	2 cut(s)	124, 551
AsuII	TTCGAA	1 cut(s)	420
BanI	GGYRCC	1 cut(s)	289
BanII	GRGCYC	1 cut(s)	366
BauI	CACGAG	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	157, 511
BccI	CCATC	3 cut(s)	21, 436, 463
BceAI	ACGGC	1 cut(s)	202
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BciT130I	CCWGG	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	212
BfoI	RGCGCY	1 cut(s)	293
BglI	GCCNNNNNGGC	1 cut(s)	374
BisI	GCNGC	5 cut(s)	146, 240, 357, 431, 525
BlsI	GCNGC	5 cut(s)	147, 241, 358, 432, 526
Bme1390I	CCNGG	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	375
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	254
BmsI	GCATC	2 cut(s)	226, 337
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	122
Bpu14I	TTCGAA	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	569
BsaHI	GRCGYC	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	45, 60
Bsc4I	CCNNNNNNNGG	2 cut(s)	372, 384
Bse118I	RCCGGY	1 cut(s)	377
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	2 cut(s)	45, 60
BseGI	GGATG	2 cut(s)	70, 352
BseLI	CCNNNNNNNGG	2 cut(s)	372, 384
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	2 cut(s)	185, 213
BseXI	GCAGC	2 cut(s)	157, 511
BseYI	CCCAGC	1 cut(s)	401
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	378
BslI	CCNNNNNNNGG	2 cut(s)	372, 384
BsmAI	GTCTC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	1 cut(s)	377
Bsp119I	TTCGAA	1 cut(s)	420
Bsp1286I	GDGCHC	1 cut(s)	366
BspACI	CCGC	4 cut(s)	239, 357, 366, 431
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	2 cut(s)	186, 214
BspLI	GGNNCC	1 cut(s)	291
BspT104I	TTCGAA	1 cut(s)	420
BspT107I	GGYRCC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	351
BsrFI	RCCGGY	1 cut(s)	377
BssAI	RCCGGY	1 cut(s)	377
BssECI	CCNNGG	2 cut(s)	45, 60
BssNI	GRCGYC	1 cut(s)	290
BssSI	CACGAG	1 cut(s)	12
Bst2BI	CACGAG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	2 cut(s)	426, 491
Bst6I	CTCTTC	1 cut(s)	78
BstACI	GRCGYC	1 cut(s)	290
BstBI	TTCGAA	1 cut(s)	420
BstC8I	GCNNGC	2 cut(s)	288, 366
BstDEI	CTNAG	2 cut(s)	194, 222
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	2 cut(s)	70, 352
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	292
BstMAI	GTCTC	1 cut(s)	212
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 142, 298, 356, 365, 374, 530
BstNI	CCWGG	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	252
BstV1I	GCAGC	2 cut(s)	157, 511
BstXI	CCANNNNNNTGG	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	377
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	70, 352
BtsIMutI	CAGTG	1 cut(s)	496
Cac8I	GCNNGC	2 cut(s)	288, 366
CaiI	CAGNNNCTG	1 cut(s)	286
CfoI	GCGC	1 cut(s)	292
Cfr10I	RCCGGY	1 cut(s)	377
Cfr13I	GGNCC	1 cut(s)	375
Csp6I	GTAC	2 cut(s)	184, 250
CspCI	CAANNNNNGTGG	2 cut(s)	475, 510
CviAII	CATG	1 cut(s)	407
CviQI	GTAC	2 cut(s)	184, 250
DdeI	CTNAG	2 cut(s)	194, 222
DinI	GGCGCC	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	366
Eco57I	CTGAAG	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	252
EcoT22I	ATGCAT	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	366
EgeI	GGCGCC	1 cut(s)	291
EheI	GGCGCC	1 cut(s)	291
FaeI	CATG	1 cut(s)	410
FaiI	YATR	6 cut(s)	33, 272, 306, 393, 408, 462
FatI	CATG	1 cut(s)	406
FauI	CCCGC	1 cut(s)	373
Fnu4HI	GCNGC	5 cut(s)	146, 240, 357, 431, 525
FokI	GGATG	2 cut(s)	77, 359
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	5 cut(s)	146, 240, 357, 431, 525
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	5 cut(s)	146, 240, 357, 431, 525
GsaI	CCCAGC	1 cut(s)	405
GsuI	CTGGAG	1 cut(s)	122
HaeII	RGCGCY	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	1 cut(s)	378
HhaI	GCGC	1 cut(s)	292
Hin1I	GRCGYC	1 cut(s)	290
Hin1II	CATG	1 cut(s)	410
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HinfI	GANTC	3 cut(s)	71, 88, 131
HpaII	CCGG	1 cut(s)	378
HphI	GGTGA	2 cut(s)	124, 551
Hpy188I	TCNGA	3 cut(s)	82, 195, 398
Hpy188III	TCNNGA	2 cut(s)	92, 548
HpyCH4III	ACNGT	2 cut(s)	426, 491
HpyCH4V	TGCA	3 cut(s)	391, 460, 533
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 142, 298, 356, 365, 374, 530
HpyF3I	CTNAG	2 cut(s)	194, 222
Hsp92I	GRCGYC	1 cut(s)	290
Hsp92II	CATG	1 cut(s)	410
HspAI	GCGC	1 cut(s)	290
KasI	GGCGCC	1 cut(s)	289
LmnI	GCTCC	3 cut(s)	173, 256, 415
Lsp1109I	GCAGC	2 cut(s)	157, 511
LweI	GCATC	2 cut(s)	226, 337
MaeIII	GTNAC	1 cut(s)	5
MboII	GAAGA	3 cut(s)	95, 245, 409
MfeI	CAATTG	1 cut(s)	534
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	3 cut(s)	213, 295, 534
Mly113I	GGCGCC	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	140
Mph1103I	ATGCAT	1 cut(s)	462
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	2 cut(s)	162, 209
MspI	CCGG	1 cut(s)	378
MspR9I	CCNGG	1 cut(s)	254
MunI	CAATTG	1 cut(s)	534
Mva1269I	GAATGC	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	7 cut(s)	41, 142, 298, 356, 365, 374, 530
NarI	GGCGCC	1 cut(s)	290
NlaIII	CATG	1 cut(s)	410
NlaIV	GGNNCC	1 cut(s)	291
NmeAIII	GCCGAG	2 cut(s)	70, 385
NsiI	ATGCAT	1 cut(s)	462
NspV	TTCGAA	1 cut(s)	420
PctI	GAATGC	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	71, 88
PkrI	GCNGC	5 cut(s)	147, 241, 358, 432, 526
PleI	GAGTC	1 cut(s)	139
PluTI	GGCGCC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	252
PspFI	CCCAGC	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	1 cut(s)	375
PstNI	CAGNNNCTG	1 cut(s)	286
RsaI	GTAC	2 cut(s)	185, 251
RsaNI	GTAC	2 cut(s)	184, 250
SaqAI	TTAA	2 cut(s)	162, 209
SatI	GCNGC	5 cut(s)	146, 240, 357, 431, 525
Sau96I	GGNCC	1 cut(s)	375
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	366
SetI	ASST	9 cut(s)	129, 158, 261, 288, 516, 526, 547, 561, 570
SfaNI	GCATC	2 cut(s)	226, 337
SfoI	GGCGCC	1 cut(s)	291
SfuI	TTCGAA	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	3 cut(s)	213, 295, 534
SsiI	CCGC	4 cut(s)	239, 357, 366, 431
SspDI	GGCGCC	1 cut(s)	289
StyD4I	CCNGG	1 cut(s)	252
TaaI	ACNGT	2 cut(s)	426, 491
TaqI	TCGA	1 cut(s)	420
TasI	AATT	3 cut(s)	213, 295, 534
TauI	GCSGC	3 cut(s)	242, 359, 433
TfiI	GAWTC	2 cut(s)	71, 88
Tru1I	TTAA	2 cut(s)	162, 209
Tru9I	TTAA	2 cut(s)	162, 209
TscAI	CASTG	1 cut(s)	496
TseI	GCWGC	2 cut(s)	145, 524
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	496
XmnI	GAANNNNTTC	1 cut(s)	87
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.