Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007623

Physical Location & Seq

Genomic Coordinates Reverse (-)

57742999 .. 57751292

Gene Structure 8294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG356400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2649 bp

ATGTGGAGAACCCTAGCCAAACAAGCTGCTTCTTCTTCTTCTTCTTCAACAAAGACCAAGCTTTTCTCTCCCTCTCCATTCAGCTCTGCTTTGAAACTTGCTCAAGAATCGAGCTTTCTGGGGAAAAGCAGGCATTTTGAGGCTCGCGTCTGCAGAAATCATGGGTCTTCGTTAATGGGTTTAGGCCAGGTTGGTGGTGCATCGTCCCAGGAAGACGGATTGGGCAGACCCAGTTTGCTGAATCCGAGTTACCCTCGTGGGTTTGGGAGATGGTATGCTACTTCTGCCGAGGCCATTGCTTCCACGGATGAGGAATCTGGGTCTGAAGAGATTCAGGAAATACTGGAGGATTTGGTGAGGGAGAACAAGGTGGAGTCGCATTTGAGGCAGCCCAAGAGGTTGGTTAATGGAATGGGAGCAGGCAAGTATGGCATTCTGAGAAAGAGGCAGTTAAAAATTGAGACTGAGGCTTGGGAAGATGCGGCGAAGGAGTACCAGGAGCTTTTGGCTGATATGTGTGAGCAGAAGCTGGCGCCCAATTTGCCTTATGTGAAGTCATTGTTTCTGGGGTGGTTTGAGCCATTGAGGGATGCCATTGCCGCCGAGCCCGCCACTTGGGCCGGTAAGAGGGTGCATATCAGACCCAGCCATGCTCCATTCTTCGAACTGTTGCCGCCCGATAAGATGGCTGTTATTACAATGCATAAGTTGATGGGGCTGTTGATGACCAACAGTGGTGGAGTTGGGTCTGTCAAGGTGGTTCAAGCTGCTTGTGCAATTGGTGAAGCTCTTGAGAATGAGGTTAAGATACACAGATTTTTGGAGAAGACAAAGAAGAAGAGCATTGCTATTAAGAAACCTGAAGCTGAATCTGATATTGTGACCAATGAACAAGAGAAACTTATCAACGAACAGGAGCAAGAGAAACTAACCAAAGAACAGGAGCTAGAAAAACTAACCAAAGAACAAAGACTGAGGAAAAAGGTTACAAAGTTGCTAAAAATGCAGAAGCTTCAGCGAGTAAAGGAAATTGTGAAGGAACAAGACGGCTTAAAGCCATGGGGTCAAGAAGCTCATGTTAAGGTCGGCTGTCGATTGATTCAGTTAATGATGGAAACAGCTTATATACAACCTGCACTTGATCAATTAGGAGATGCTCCGCCTGATATTCGCCCGGCATTCATGCATACTCTTAAGACTATAACTAAAGAGGCACAGAAGACCAACAGGAGATATGGTGTTATTGAATGCGACCCATTAGTTCGCAAAGGGATGGAGAAAACAGCAAGGCACATGGTCATTCCTTATATGCCAATGTTGGTGCCTCCACTTAACTGGACAGGGTATGATAAAGGAGCATATTTATTCTTACCATCCTATGTTATGCGAACTCATGGAGCGAAACAACAGCGCCAAGTTGTTAAATCAACTCCTAGGAAGCAATTAGAACCTGTTTACGAGGCCCTGGATACTCTTGGAAATACCAAATGGAGGATAAACAGAAGGGTACTTGGTGTAGTGGACAGGATATGGGCTAGTGGAGGATGTCTTGCTGATTTGGTTGACCGTGAAGATGTTCCTTTGCCTGAAGAACCAGACACAGAAGATGAGGCAGAAATGAGAAAATGGAAATGGAAAGTTAAAGCTGTGAAAAAGAAGAATAGTGAGAGGCACTCACAGCGTTGTGATACAGAACTTAAACTTTCTGTAGCTCGAAAGATGAAGGACGAGGAAGGCTTCTACTATCCGCACAATCTTGATTTCCGTGGTCGTGCCTACCCCATGCACCCATATCTAAACCATCTTGGTTCCGATATGTGCAGAGGCATCCTGGAGTTTGCAGAGGGACGTCGTCTTGGAAAATCTGGCTTACGCTGGTTGAAGATACATCTGGCAAATTTATATGCTGGTGGAGTTGACAAGCTCTCCTATGATGATCGAGTAGCATTTACGGAAAACCATGTAGATGAAATTTTTGATTGCGCAGACAGACCTCTTGAAGGAAGGCGTTGGTGGTTGGGTGCGGAAGATCCTTTCCAATGCTTGGCAGCATGCATTAATCTCACTGAAGCATTGAGAAGCCCCTCACCGGAGACTACCATTTCTTATATGCCTGTTCACCAGGATGGTTCATGTAATGGTTTACAACACTATGCTGCCCTCGGAAGGGACAAGCTTGGAGCAGCTGCTGTAAATCTTGTTGGGGGAGAGAAACCTGCTGATGTTTACTCAGGAATTGCTGCCAGGGTACTCAATATAATGCGCACAGATGCAGAGAAAGATCCAGCCAGTAGTCCAAATTCATTGCACGCTAGGCTTTTAATTAATGAGGTCGATCGTAAATTGGTGAAGCAGACAGTAATGACCTCCGTATATGGTGTTACTTATATTGGTGCACGCGATCAAATTAAGAAGAGATTAAAGGAGCGTGGTACCATAGCAGATGACGCGATGCTGTTTGCCGCATCTTGCTATGCTGCTAGAACCACCTTGACTGCCCTAGGAGAGATGTTTGAAGCTGCAAGAAGTATTATGAGTTGGCTTGGTGAATGTGCGAAGGTTTGTCTTATTTACTTTGTAAAATTATGGGAATGGTGTAGTTGGTCCTGGTCCGGCTGGTGTCAGGGTAGGATCTGGTTAGGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

882

Amino Acids

99.57

Weight (kDa)

8.95

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPOL_N	PF14700	149 - 494	1.3e-83	DNA-directed RNA polymerase N-terminal
RNA_pol	PF00940	618 - 855	3e-97	DNA-dependent RNA polymerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68990 AT1G68990
fragaria_vesca	FvH4_4g28970 FvH4_4g28970 FvH4_4g28970 FvH4_4g28970 FvH4_4g28970
malus_domestica	MD13G1055100.v1.1 MD16G1054000.v1.1
prunus_persica	Prupe.1G295700_v2.0.a1 Prupe.1G295700_v2.0.a1
pyrus_communis	pycom13g04880 pycom16g04700
rosa_chinensis	RchiOBHm_Chr4g0437111
rosa_laevigata	RLG00000006467
rosa_multiflora	Rmu_co8109606.1_g000001 Rmu_ssc0000006.1_g000008
rosa_roxburghii	Rroxscaffold_5G00378180
rosa_rugosa	Rorug04G0298100
rosa_samantha	Rh4AG352900 Rh4BG362400 Rh4CG376600 Rh4DG356400
rosa_wichuraiana	Rw4G030900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1852
Acc16I	TGCGCA	2 cut(s)	1984, 2264
Acc36I	ACCTGC	2 cut(s)	1141, 2224
Acc65I	GGTACC	1 cut(s)	2432
AccB1I	GGYRCC	3 cut(s)	532, 1321, 2432
AccB7I	CCANNNNNTGG	1 cut(s)	2044
AccII	CGCG	3 cut(s)	147, 2400, 2450
AciI	CCGC	8 cut(s)	482, 600, 609, 674, 1160, 1748, 2024, 2463
AclWI	GGATC	3 cut(s)	2024, 2276, 2639
AcsI	RAATTY	3 cut(s)	1897, 1971, 2299
AcuI	CTGAAG	5 cut(s)	345, 882, 998, 1608, 2088
AcyI	GRCGYC	2 cut(s)	533, 1849
AfaI	GTAC	4 cut(s)	494, 1509, 2250, 2434
AfiI	CCNNNNNNNGG	8 cut(s)	615, 627, 1491, 2000, 2044, 2089, 2166, 2167
AflII	CTTAAG	1 cut(s)	1193
AgsI	TTSAA	7 cut(s)	48, 94, 764, 1247, 1882, 2000, 2516
AjnI	CCWGG	8 cut(s)	186, 207, 495, 1464, 1830, 2121, 2243, 2606
Alw21I	GWGCWC	1 cut(s)	2398
Alw26I	GTCTC	2 cut(s)	455, 2087
Alw44I	GTGCAC	1 cut(s)	2394
AlwI	GGATC	3 cut(s)	2024, 2276, 2639
AlwNI	CAGNNNCTG	2 cut(s)	529, 2189
AoxI	GGCC	4 cut(s)	184, 291, 618, 1461
ApaLI	GTGCAC	1 cut(s)	2394
ApoI	RAATTY	3 cut(s)	1897, 1971, 2299
AseI	ATTAAT	2 cut(s)	2058, 2325
Asp700I	GAANNNNTTC	2 cut(s)	330, 1575
Asp718I	GGTACC	1 cut(s)	2432
AspA2I	CCTAGG	2 cut(s)	1433, 2500
AspLEI	GCGC	4 cut(s)	535, 1413, 1985, 2265
AspS9I	GGNCC	4 cut(s)	618, 1462, 2604, 2610
AsuC2I	CCSGG	1 cut(s)	1175
AsuHPI	GGTGA	6 cut(s)	367, 794, 2079, 2111, 2359, 2558
AsuII	TTCGAA	1 cut(s)	663
AvaII	GGWCC	2 cut(s)	2604, 2610
AvrII	CCTAGG	2 cut(s)	1433, 2500
BaeGI	GKGCMC	1 cut(s)	2398
BanI	GGYRCC	3 cut(s)	532, 1321, 2432
BanII	GRGCYC	1 cut(s)	609
BauI	CACGAG	1 cut(s)	255
BbsI	GAAGAC	4 cut(s)	159, 219, 833, 1226
Bbv12I	GWGCWC	1 cut(s)	2398
BccI	CCATC	8 cut(s)	264, 679, 706, 1105, 1267, 1381, 1809, 2120
BceAI	ACGGC	1 cut(s)	1063
BcgI	CGANNNNNNTGC	2 cut(s)	278, 312
BciT130I	CCWGG	8 cut(s)	188, 209, 497, 1466, 1832, 2123, 2245, 2608
BciVI	GTATCC	1 cut(s)	1462
BclI	TGATCA	1 cut(s)	1141
BcnI	CCSGG	1 cut(s)	1175
BcoDI	GTCTC	2 cut(s)	455, 2087
BfaI	CTAG	7 cut(s)	14, 947, 1434, 1536, 2313, 2481, 2501
BfmI	CTRYAG	2 cut(s)	151, 1707
BfoI	RGCGCY	2 cut(s)	536, 1414
BfrI	CTTAAG	1 cut(s)	1193
BfuAI	ACCTGC	2 cut(s)	1141, 2224
BfuI	GTATCC	1 cut(s)	1462
BglI	GCCNNNNNGGC	1 cut(s)	617
BlnI	CCTAGG	2 cut(s)	1433, 2500
Bme1390I	CCNGG	9 cut(s)	188, 209, 497, 1175, 1466, 1832, 2123, 2245, 2608
Bme18I	GGWCC	2 cut(s)	2604, 2610
BmgT120I	GGNCC	4 cut(s)	618, 1462, 2604, 2610
BmiI	GGNNCC	4 cut(s)	534, 1323, 1810, 2434
BmrFI	CCNGG	9 cut(s)	188, 209, 497, 1175, 1466, 1832, 2123, 2245, 2608
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	8 cut(s)	209, 469, 580, 1144, 1836, 2260, 2442, 2474
BmuI	ACTGGG	1 cut(s)	225
BpiI	GAAGAC	4 cut(s)	159, 219, 833, 1226
BplI	GAGNNNNNCTC	4 cut(s)	238, 270, 1658, 1690
BpmI	CTGGAG	2 cut(s)	365, 1853
Bpu14I	TTCGAA	1 cut(s)	663
BpuEI	CTTGAG	2 cut(s)	87, 812
BpuMI	CCSGG	1 cut(s)	1175
BsaHI	GRCGYC	2 cut(s)	533, 1849
BsaWI	WCCGGW	1 cut(s)	2089
BsaXI	ACNNNNNCTCC	4 cut(s)	1222, 1252, 1910, 1940
Bsc4I	CCNNNNNNNGG	8 cut(s)	615, 627, 1491, 2000, 2044, 2089, 2166, 2167
Bse118I	RCCGGY	1 cut(s)	620
Bse1I	ACTGG	4 cut(s)	231, 348, 1340, 2289
Bse3DI	GCAATG	4 cut(s)	294, 594, 843, 2303
BseBI	CCWGG	8 cut(s)	188, 209, 497, 1466, 1832, 2123, 2245, 2608
BseGI	GGATG	7 cut(s)	313, 595, 1278, 1373, 1550, 1827, 2131
BseLI	CCNNNNNNNGG	8 cut(s)	615, 627, 1491, 2000, 2044, 2089, 2166, 2167
BseMI	GCAATG	4 cut(s)	294, 594, 843, 2303
BseMII	CTCAG	4 cut(s)	428, 456, 965, 2244
BseNI	ACTGG	4 cut(s)	231, 348, 1340, 2289
BseSI	GKGCMC	1 cut(s)	2398
BseYI	CCCAGC	1 cut(s)	644
BsgI	GTGCAG	2 cut(s)	1119, 1840
Bsh1236I	CGCG	3 cut(s)	147, 2400, 2450
Bsh1285I	CGRYCG	1 cut(s)	2338
BshFI	GGCC	4 cut(s)	186, 293, 620, 1463
BshNI	GGYRCC	3 cut(s)	532, 1321, 2432
BsiEI	CGRYCG	1 cut(s)	2338
BsiHKAI	GWGCWC	1 cut(s)	2398
BsiSI	CCGG	4 cut(s)	621, 1175, 2090, 2613
BslFI	GGGAC	3 cut(s)	190, 1860, 2183
BslI	CCNNNNNNNGG	8 cut(s)	615, 627, 1491, 2000, 2044, 2089, 2166, 2167
BsmAI	GTCTC	2 cut(s)	455, 2087
BsmFI	GGGAC	3 cut(s)	190, 1860, 2183
BsmI	GAATGC	3 cut(s)	432, 1178, 1253
BsnI	GGCC	4 cut(s)	186, 293, 620, 1463
Bsp119I	TTCGAA	1 cut(s)	663
Bsp1286I	GDGCHC	2 cut(s)	609, 2398
Bsp143I	GATC	7 cut(s)	1141, 1936, 2029, 2281, 2335, 2401, 2631
Bsp19I	CCATGG	1 cut(s)	1058
BspACI	CCGC	8 cut(s)	482, 600, 609, 674, 1160, 1748, 2024, 2463
BspANI	GGCC	4 cut(s)	186, 293, 620, 1463
BspCNI	CTCAG	4 cut(s)	429, 457, 966, 2243
BspFNI	CGCG	3 cut(s)	147, 2400, 2450
BspLI	GGNNCC	4 cut(s)	534, 1323, 1810, 2434
BspMAI	CTGCAG	1 cut(s)	155
BspMI	ACCTGC	2 cut(s)	1141, 2224
BspPI	GGATC	3 cut(s)	2024, 2276, 2639
BspQI	GCTCTTC	1 cut(s)	833
BspT104I	TTCGAA	1 cut(s)	663
BspT107I	GGYRCC	3 cut(s)	532, 1321, 2432
BspTI	CTTAAG	1 cut(s)	1193
BsrDI	GCAATG	4 cut(s)	294, 594, 843, 2303
BsrFI	RCCGGY	1 cut(s)	620
BsrI	ACTGG	4 cut(s)	231, 348, 1340, 2289
BssAI	RCCGGY	1 cut(s)	620
BssMI	GATC	7 cut(s)	1141, 1936, 2029, 2281, 2335, 2401, 2631
BssNI	GRCGYC	2 cut(s)	533, 1849
BssSI	CACGAG	1 cut(s)	255
BssT1I	CCWWGG	3 cut(s)	1058, 1433, 2500
Bst2BI	CACGAG	1 cut(s)	255
Bst2UI	CCWGG	8 cut(s)	188, 209, 497, 1466, 1832, 2123, 2245, 2608
Bst4CI	ACNGT	4 cut(s)	669, 734, 1568, 2359
Bst6I	CTCTTC	3 cut(s)	321, 833, 2408
BstACI	GRCGYC	2 cut(s)	533, 1849
BstAFI	CTTAAG	1 cut(s)	1193
BstBI	TTCGAA	1 cut(s)	663
BstC8I	GCNNGC	8 cut(s)	131, 145, 421, 531, 609, 2053, 2310, 2398
BstDEI	CTNAG	4 cut(s)	437, 465, 974, 2230
BstDSI	CCRYGG	3 cut(s)	303, 1058, 1765
BstENI	CCTNNNNNAGG	1 cut(s)	1998
BstF5I	GGATG	7 cut(s)	313, 595, 1278, 1373, 1550, 1827, 2131
BstFNI	CGCG	3 cut(s)	147, 2400, 2450
BstH2I	RGCGCY	2 cut(s)	536, 1414
BstHHI	GCGC	4 cut(s)	535, 1413, 1985, 2265
BstKTI	GATC	7 cut(s)	1144, 1939, 2032, 2284, 2338, 2404, 2634
BstMAI	GTCTC	2 cut(s)	455, 2087
BstMBI	GATC	7 cut(s)	1141, 1936, 2029, 2281, 2335, 2401, 2631
BstMCI	CGRYCG	1 cut(s)	2338
BstNI	CCWGG	8 cut(s)	188, 209, 497, 1466, 1832, 2123, 2245, 2608
BstNSI	RCATGY	1 cut(s)	2055
BstSCI	CCNGG	9 cut(s)	186, 207, 495, 1173, 1464, 1830, 2121, 2243, 2606
BstSFI	CTRYAG	2 cut(s)	151, 1707
BstSLI	GKGCMC	1 cut(s)	2398
BstUI	CGCG	3 cut(s)	147, 2400, 2450
BstV2I	GAAGAC	4 cut(s)	159, 219, 833, 1226
BstX2I	RGATCY	3 cut(s)	2029, 2281, 2631
BstXI	CCANNNNNNTGG	3 cut(s)	194, 400, 1335
BstYI	RGATCY	3 cut(s)	2029, 2281, 2631
BsuI	GTATCC	1 cut(s)	1462
BsuRI	GGCC	4 cut(s)	186, 293, 620, 1463
BtgI	CCRYGG	3 cut(s)	303, 1058, 1765
BtgZI	GCGATG	1 cut(s)	2465
BtsCI	GGATG	7 cut(s)	313, 595, 1278, 1373, 1550, 1827, 2131
BtsIMutI	CAGTG	2 cut(s)	739, 2064
BveI	ACCTGC	2 cut(s)	1141, 2224
Cac8I	GCNNGC	8 cut(s)	131, 145, 421, 531, 609, 2053, 2310, 2398
CaiI	CAGNNNCTG	2 cut(s)	529, 2189
CfoI	GCGC	4 cut(s)	535, 1413, 1985, 2265
Cfr10I	RCCGGY	1 cut(s)	620
Cfr13I	GGNCC	4 cut(s)	618, 1462, 2604, 2610
CseI	GACGC	2 cut(s)	136, 2456
Csp6I	GTAC	4 cut(s)	493, 1508, 2249, 2433
CspCI	CAANNNNNGTGG	2 cut(s)	718, 753
CviQI	GTAC	4 cut(s)	493, 1508, 2249, 2433
DdeI	CTNAG	4 cut(s)	437, 465, 974, 2230
DinI	GGCGCC	1 cut(s)	534
DpnI	GATC	7 cut(s)	1143, 1938, 2031, 2283, 2337, 2403, 2633
DpnII	GATC	7 cut(s)	1141, 1936, 2029, 2281, 2335, 2401, 2631
Eam1104I	CTCTTC	3 cut(s)	321, 833, 2408
EarI	CTCTTC	3 cut(s)	321, 833, 2408
EciI	GGCGGA	1 cut(s)	1149
Eco130I	CCWWGG	3 cut(s)	1058, 1433, 2500
Eco24I	GRGCYC	1 cut(s)	609
Eco47I	GGWCC	2 cut(s)	2604, 2610
Eco57I	CTGAAG	5 cut(s)	345, 882, 998, 1608, 2088
EcoNI	CCTNNNNNAGG	1 cut(s)	1998
EcoO109I	RGGNCCY	1 cut(s)	1462
EcoRII	CCWGG	8 cut(s)	186, 207, 495, 1464, 1830, 2121, 2243, 2606
EcoT14I	CCWWGG	3 cut(s)	1058, 1433, 2500
EcoT22I	ATGCAT	3 cut(s)	705, 1188, 2057
EcoT38I	GRGCYC	1 cut(s)	609
EgeI	GGCGCC	1 cut(s)	534
EheI	GGCGCC	1 cut(s)	534
ErhI	CCWWGG	3 cut(s)	1058, 1433, 2500
FalI	AAGNNNNNCTT	2 cut(s)	885, 917
FaqI	GGGAC	3 cut(s)	190, 1860, 2183
FauI	CCCGC	1 cut(s)	616
FbaI	TGATCA	1 cut(s)	1141
FokI	GGATG	7 cut(s)	320, 602, 1285, 1360, 1557, 1814, 2138
FriOI	GRGCYC	1 cut(s)	609
FspAI	RTGCGCAY	1 cut(s)	2264
FspBI	CTAG	7 cut(s)	14, 947, 1434, 1536, 2313, 2481, 2501
FspI	TGCGCA	2 cut(s)	1984, 2264
GlaI	GCGC	4 cut(s)	534, 1412, 1984, 2264
GsaI	CCCAGC	1 cut(s)	648
GsuI	CTGGAG	2 cut(s)	365, 1853
HaeII	RGCGCY	2 cut(s)	536, 1414
HaeIII	GGCC	4 cut(s)	186, 293, 620, 1463
HapII	CCGG	4 cut(s)	621, 1175, 2090, 2613
HgaI	GACGC	2 cut(s)	136, 2456
HhaI	GCGC	4 cut(s)	535, 1413, 1985, 2265
Hin1I	GRCGYC	2 cut(s)	533, 1849
Hin6I	GCGC	4 cut(s)	533, 1411, 1983, 2263
HinP1I	GCGC	4 cut(s)	533, 1411, 1983, 2263
HincII	GTYRAC	2 cut(s)	1564, 1918
HindII	GTYRAC	2 cut(s)	1564, 1918
HindIII	AAGCTT	3 cut(s)	59, 1010, 2174
HinfI	GANTC	7 cut(s)	107, 241, 314, 331, 374, 869, 1099
HpaII	CCGG	4 cut(s)	621, 1175, 2090, 2613
HphI	GGTGA	6 cut(s)	367, 794, 2079, 2111, 2359, 2558
Hpy166II	GTNNAC	8 cut(s)	1456, 1522, 1564, 1918, 2119, 2144, 2227, 2396
Hpy188I	TCNGA	7 cut(s)	246, 325, 438, 641, 874, 1813, 2165
Hpy188III	TCNNGA	7 cut(s)	104, 335, 791, 1067, 1757, 1997, 2232
Hpy8I	GTNNAC	8 cut(s)	1456, 1522, 1564, 1918, 2119, 2144, 2227, 2396
Hpy99I	CGWCG	1 cut(s)	1854
HpyAV	CCTTC	9 cut(s)	481, 1030, 1497, 1717, 1727, 1994, 1998, 2160, 2551
HpyCH4III	ACNGT	4 cut(s)	669, 734, 1568, 2359
HpyCH4IV	ACGT	1 cut(s)	1849
HpyF3I	CTNAG	4 cut(s)	437, 465, 974, 2230
HpySE526I	ACGT	1 cut(s)	1849
Hsp92I	GRCGYC	2 cut(s)	533, 1849
HspAI	GCGC	4 cut(s)	533, 1411, 1983, 2263
KasI	GGCGCC	1 cut(s)	532
KpnI	GGTACC	1 cut(s)	2436
Ksp22I	TGATCA	1 cut(s)	1141
Kzo9I	GATC	7 cut(s)	1141, 1936, 2029, 2281, 2335, 2401, 2631
LguI	GCTCTTC	1 cut(s)	833
LweI	GCATC	8 cut(s)	209, 469, 580, 1144, 1836, 2260, 2442, 2474
MaeI	CTAG	7 cut(s)	14, 947, 1434, 1536, 2313, 2481, 2501
MaeII	ACGT	1 cut(s)	1849
MaeIII	GTNAC	4 cut(s)	248, 880, 985, 2380
MalI	GATC	7 cut(s)	1143, 1938, 2031, 2283, 2337, 2403, 2633
MboI	GATC	7 cut(s)	1141, 1936, 2029, 2281, 2335, 2401, 2631
MfeI	CAATTG	1 cut(s)	777
MflI	RGATCY	3 cut(s)	2029, 2281, 2631
MhlI	GDGCHC	2 cut(s)	609, 2398
Mly113I	GGCGCC	1 cut(s)	533
MlyI	GAGTC	1 cut(s)	383
Mph1103I	ATGCAT	3 cut(s)	705, 1188, 2057
MroXI	GAANNNNTTC	2 cut(s)	330, 1575
MslI	CAYNNNNRTG	2 cut(s)	1965, 2124
MspA1I	CMGCKG	1 cut(s)	2186
MspCI	CTTAAG	1 cut(s)	1193
MspI	CCGG	4 cut(s)	621, 1175, 2090, 2613
MspR9I	CCNGG	9 cut(s)	188, 209, 497, 1175, 1466, 1832, 2123, 2245, 2608
MunI	CAATTG	1 cut(s)	777
Mva1269I	GAATGC	3 cut(s)	432, 1178, 1253
MvaI	CCWGG	8 cut(s)	188, 209, 497, 1466, 1832, 2123, 2245, 2608
MvnI	CGCG	3 cut(s)	147, 2400, 2450
NarI	GGCGCC	1 cut(s)	533
NciI	CCSGG	1 cut(s)	1175
NcoI	CCATGG	1 cut(s)	1058
NdeII	GATC	7 cut(s)	1141, 1936, 2029, 2281, 2335, 2401, 2631
NlaIV	GGNNCC	4 cut(s)	534, 1323, 1810, 2434
NmeAIII	GCCGAG	2 cut(s)	313, 628
NmuCI	GTSAC	1 cut(s)	880
NsbI	TGCGCA	2 cut(s)	1984, 2264
NsiI	ATGCAT	3 cut(s)	705, 1188, 2057
NspI	RCATGY	1 cut(s)	2055
NspV	TTCGAA	1 cut(s)	663
PacI	TTAATTAA	1 cut(s)	2325
PaeI	GCATGC	1 cut(s)	2055
PciSI	GCTCTTC	1 cut(s)	833
PctI	GAATGC	3 cut(s)	432, 1178, 1253
PdmI	GAANNNNTTC	2 cut(s)	330, 1575
PfeI	GAWTC	6 cut(s)	107, 241, 314, 331, 869, 1099
PflFI	GACNNNGTC	1 cut(s)	1851
PflMI	CCANNNNNTGG	1 cut(s)	2044
PfoI	TCCNGGA	1 cut(s)	1830
Ple19I	CGATCG	1 cut(s)	2338
PleI	GAGTC	1 cut(s)	382
PluTI	GGCGCC	1 cut(s)	536
PpsI	GAGTC	1 cut(s)	382
PshBI	ATTAAT	2 cut(s)	2058, 2325
Psp6I	CCWGG	8 cut(s)	186, 207, 495, 1464, 1830, 2121, 2243, 2606
PspFI	CCCAGC	1 cut(s)	644
PspGI	CCWGG	8 cut(s)	186, 207, 495, 1464, 1830, 2121, 2243, 2606
PspN4I	GGNNCC	4 cut(s)	534, 1323, 1810, 2434
PspPI	GGNCC	4 cut(s)	618, 1462, 2604, 2610
PstI	CTGCAG	1 cut(s)	155
PstNI	CAGNNNCTG	2 cut(s)	529, 2189
PsuI	RGATCY	3 cut(s)	2029, 2281, 2631
PsyI	GACNNNGTC	1 cut(s)	1851
PvuI	CGATCG	1 cut(s)	2338
PvuII	CAGCTG	1 cut(s)	2186
RsaI	GTAC	4 cut(s)	494, 1509, 2250, 2434
RsaNI	GTAC	4 cut(s)	493, 1508, 2249, 2433
RseI	CAYNNNNRTG	2 cut(s)	1965, 2124
SapI	GCTCTTC	1 cut(s)	833
Sau3AI	GATC	7 cut(s)	1141, 1936, 2029, 2281, 2335, 2401, 2631
Sau96I	GGNCC	4 cut(s)	618, 1462, 2604, 2610
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	9 cut(s)	188, 209, 497, 1175, 1466, 1832, 2123, 2245, 2608
SduI	GDGCHC	2 cut(s)	609, 2398
SfaNI	GCATC	8 cut(s)	209, 469, 580, 1144, 1836, 2260, 2442, 2474
SfcI	CTRYAG	2 cut(s)	151, 1707
SfoI	GGCGCC	1 cut(s)	534
SfuI	TTCGAA	1 cut(s)	663
SinI	GGWCC	2 cut(s)	2604, 2610
SmiMI	CAYNNNNRTG	2 cut(s)	1965, 2124
SmlI	CTYRAG	3 cut(s)	102, 791, 1193
SmoI	CTYRAG	3 cut(s)	102, 791, 1193
SphI	GCATGC	1 cut(s)	2055
SsiI	CCGC	8 cut(s)	482, 600, 609, 674, 1160, 1748, 2024, 2463
SspDI	GGCGCC	1 cut(s)	532
SspMI	CTAG	7 cut(s)	14, 947, 1434, 1536, 2313, 2481, 2501
StyD4I	CCNGG	9 cut(s)	186, 207, 495, 1173, 1464, 1830, 2121, 2243, 2606
StyI	CCWWGG	3 cut(s)	1058, 1433, 2500
TaaI	ACNGT	4 cut(s)	669, 734, 1568, 2359
TaiI	ACGT	1 cut(s)	1852
TaqI	TCGA	6 cut(s)	110, 663, 1093, 1714, 1939, 2334
TauI	GCSGC	4 cut(s)	485, 602, 676, 2465
TfiI	GAWTC	6 cut(s)	107, 241, 314, 331, 869, 1099
TscAI	CASTG	2 cut(s)	739, 2071
TseFI	GTSAC	1 cut(s)	880
Tsp45I	GTSAC	1 cut(s)	880
TspDTI	ATGAA	6 cut(s)	903, 1171, 1736, 1983, 2121, 2292
TspGWI	ACGGA	5 cut(s)	231, 320, 1754, 1967, 2359
TspRI	CASTG	2 cut(s)	739, 2071
Tth111I	GACNNNGTC	1 cut(s)	1851
Van91I	CCANNNNNTGG	1 cut(s)	2044
Vha464I	CTTAAG	1 cut(s)	1193
VneI	GTGCAC	1 cut(s)	2394
VpaK11BI	GGWCC	2 cut(s)	2604, 2610
VspI	ATTAAT	2 cut(s)	2058, 2325
XagI	CCTNNNNNAGG	1 cut(s)	1998
XapI	RAATTY	3 cut(s)	1897, 1971, 2299
XceI	RCATGY	1 cut(s)	2055
XmaJI	CCTAGG	2 cut(s)	1433, 2500
XmnI	GAANNNNTTC	2 cut(s)	330, 1575
XspI	CTAG	7 cut(s)	14, 947, 1434, 1536, 2313, 2481, 2501
ZraI	GACGTC	1 cut(s)	1850
Zsp2I	ATGCAT	3 cut(s)	705, 1188, 2057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.