DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G68990 AT1G68990 |
| fragaria_vesca | FvH4_4g28970 FvH4_4g28970 FvH4_4g28970 FvH4_4g28970 FvH4_4g28970 |
| malus_domestica | MD13G1055100.v1.1 MD16G1054000.v1.1 |
| prunus_persica | Prupe.1G295700_v2.0.a1 Prupe.1G295700_v2.0.a1 |
| pyrus_communis | pycom13g04880 pycom16g04700 |
| rosa_chinensis | RchiOBHm_Chr4g0437111 |
| rosa_laevigata | RLG00000006467 |
| rosa_multiflora | Rmu_co8109606.1_g000001 Rmu_ssc0000006.1_g000008 |
| rosa_roxburghii | Rroxscaffold_5G00378180 |
| rosa_rugosa | Rorug04G0298100 |
| rosa_samantha | Rh4AG352900 Rh4BG362400 Rh4CG376600 Rh4DG356400 |
| rosa_wichuraiana | Rw4G030900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 1852, 2850 |
| Acc16I | TGCGCA | 2 cut(s) | 1984, 2264 |
| Acc36I | ACCTGC | 1 cut(s) | 2224 |
| Acc65I | GGTACC | 1 cut(s) | 2432 |
| AccB1I | GGYRCC | 3 cut(s) | 532, 1321, 2432 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2044, 2749 |
| AccI | GTMKAC | 1 cut(s) | 2850 |
| AccII | CGCG | 4 cut(s) | 144, 2400, 2430, 2976 |
| AclWI | GGATC | 5 cut(s) | 2024, 2276, 2751, 2764, 2979 |
| AcoI | YGGCCR | 1 cut(s) | 483 |
| AcsI | RAATTY | 5 cut(s) | 1897, 1971, 2299, 2803, 2914 |
| AcuI | CTGAAG | 6 cut(s) | 345, 882, 998, 1608, 2088, 2648 |
| AcyI | GRCGYC | 3 cut(s) | 533, 1849, 2847 |
| AfaI | GTAC | 6 cut(s) | 494, 1509, 2250, 2434, 2619, 2817 |
| AflII | CTTAAG | 1 cut(s) | 1193 |
| AjiI | CACGTC | 1 cut(s) | 2449 |
| AjnI | CCWGG | 8 cut(s) | 186, 207, 495, 1464, 1830, 2121, 2243, 2748 |
| Alw21I | GWGCWC | 1 cut(s) | 2398 |
| Alw26I | GTCTC | 4 cut(s) | 455, 2087, 2893, 2973 |
| Alw44I | GTGCAC | 1 cut(s) | 2394 |
| AlwI | GGATC | 5 cut(s) | 2024, 2276, 2751, 2764, 2979 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 529, 2189, 2671 |
| AoxI | GGCC | 5 cut(s) | 184, 291, 483, 618, 1461 |
| ApaLI | GTGCAC | 1 cut(s) | 2394 |
| ApoI | RAATTY | 5 cut(s) | 1897, 1971, 2299, 2803, 2914 |
| AseI | ATTAAT | 3 cut(s) | 2058, 2325, 2952 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 330, 1575 |
| Asp718I | GGTACC | 1 cut(s) | 2432 |
| AspA2I | CCTAGG | 2 cut(s) | 1433, 2500 |
| AspLEI | GCGC | 5 cut(s) | 535, 1413, 1985, 2265, 2430 |
| AspS9I | GGNCC | 3 cut(s) | 618, 1462, 2592 |
| AsuC2I | CCSGG | 1 cut(s) | 1175 |
| AsuHPI | GGTGA | 7 cut(s) | 367, 794, 2079, 2111, 2359, 2558, 2572 |
| AsuII | TTCGAA | 1 cut(s) | 663 |
| AvaII | GGWCC | 1 cut(s) | 2592 |
| AvrII | CCTAGG | 2 cut(s) | 1433, 2500 |
| BaeGI | GKGCMC | 1 cut(s) | 2398 |
| BamHI | GGATCC | 1 cut(s) | 2756 |
| BanI | GGYRCC | 3 cut(s) | 532, 1321, 2432 |
| BanII | GRGCYC | 1 cut(s) | 609 |
| BauI | CACGAG | 1 cut(s) | 255 |
| BbsI | GAAGAC | 4 cut(s) | 159, 219, 833, 1226 |
| Bbv12I | GWGCWC | 1 cut(s) | 2398 |
| BceAI | ACGGC | 2 cut(s) | 1063, 2726 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 278, 312 |
| BciT130I | CCWGG | 8 cut(s) | 188, 209, 497, 1466, 1832, 2123, 2245, 2750 |
| BciVI | GTATCC | 2 cut(s) | 1462, 2859 |
| BclI | TGATCA | 1 cut(s) | 1141 |
| BcnI | CCSGG | 1 cut(s) | 1175 |
| BcoDI | GTCTC | 4 cut(s) | 455, 2087, 2893, 2973 |
| BfaI | CTAG | 8 cut(s) | 14, 947, 1434, 1536, 2313, 2481, 2501, 3025 |
| BfmI | CTRYAG | 3 cut(s) | 151, 1707, 2568 |
| BfoI | RGCGCY | 2 cut(s) | 536, 1414 |
| BfrI | CTTAAG | 1 cut(s) | 1193 |
| BfuAI | ACCTGC | 1 cut(s) | 2224 |
| BfuI | GTATCC | 2 cut(s) | 1462, 2859 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 617 |
| BglII | AGATCT | 1 cut(s) | 3005 |
| BlnI | CCTAGG | 2 cut(s) | 1433, 2500 |
| Bme1390I | CCNGG | 9 cut(s) | 188, 209, 497, 1175, 1466, 1832, 2123, 2245, 2750 |
| Bme18I | GGWCC | 1 cut(s) | 2592 |
| BmgBI | CACGTC | 1 cut(s) | 2449 |
| BmgT120I | GGNCC | 3 cut(s) | 618, 1462, 2592 |
| BmiI | GGNNCC | 5 cut(s) | 534, 1323, 1810, 2434, 2758 |
| BmrFI | CCNGG | 9 cut(s) | 188, 209, 497, 1175, 1466, 1832, 2123, 2245, 2750 |
| BmrI | ACTGGG | 1 cut(s) | 225 |
| BmsI | GCATC | 8 cut(s) | 209, 469, 580, 1836, 2260, 2442, 2474, 2653 |
| BmuI | ACTGGG | 1 cut(s) | 225 |
| BpiI | GAAGAC | 4 cut(s) | 159, 219, 833, 1226 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 238, 270, 1658, 1690 |
| BpmI | CTGGAG | 3 cut(s) | 365, 1853, 2930 |
| Bpu14I | TTCGAA | 1 cut(s) | 663 |
| BpuEI | CTTGAG | 2 cut(s) | 84, 812 |
| BpuMI | CCSGG | 1 cut(s) | 1175 |
| BsaHI | GRCGYC | 3 cut(s) | 533, 1849, 2847 |
| BsaI | GGTCTC | 1 cut(s) | 2893 |
| BsaWI | WCCGGW | 3 cut(s) | 2089, 2581, 2968 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1222, 1252, 1910, 1940, 2903, 2933 |
| Bse118I | RCCGGY | 1 cut(s) | 620 |
| Bse1I | ACTGG | 5 cut(s) | 231, 348, 1340, 2289, 2913 |
| Bse3DI | GCAATG | 4 cut(s) | 294, 594, 843, 2303 |
| BseBI | CCWGG | 8 cut(s) | 188, 209, 497, 1466, 1832, 2123, 2245, 2750 |
| BseGI | GGATG | 8 cut(s) | 313, 595, 1278, 1373, 1827, 2131, 2578, 2758 |
| BseMI | GCAATG | 4 cut(s) | 294, 594, 843, 2303 |
| BseMII | CTCAG | 7 cut(s) | 428, 456, 965, 2244, 2861, 3004, 3016 |
| BseNI | ACTGG | 5 cut(s) | 231, 348, 1340, 2289, 2913 |
| BseSI | GKGCMC | 1 cut(s) | 2398 |
| BseYI | CCCAGC | 1 cut(s) | 644 |
| BsgI | GTGCAG | 1 cut(s) | 1840 |
| Bsh1236I | CGCG | 4 cut(s) | 144, 2400, 2430, 2976 |
| BshFI | GGCC | 5 cut(s) | 186, 293, 485, 620, 1463 |
| BshNI | GGYRCC | 3 cut(s) | 532, 1321, 2432 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2398 |
| BsiSI | CCGG | 5 cut(s) | 621, 1175, 2090, 2582, 2969 |
| BslFI | GGGAC | 3 cut(s) | 190, 1860, 2183 |
| BsmAI | GTCTC | 4 cut(s) | 455, 2087, 2893, 2973 |
| BsmFI | GGGAC | 3 cut(s) | 190, 1860, 2183 |
| BsmI | GAATGC | 3 cut(s) | 432, 1178, 1253 |
| BsnI | GGCC | 5 cut(s) | 186, 293, 485, 620, 1463 |
| Bso31I | GGTCTC | 1 cut(s) | 2893 |
| Bsp119I | TTCGAA | 1 cut(s) | 663 |
| Bsp1286I | GDGCHC | 2 cut(s) | 609, 2398 |
| Bsp1407I | TGTACA | 1 cut(s) | 2617 |
| Bsp143I | GATC | 9 cut(s) | 1141, 1936, 2029, 2281, 2401, 2756, 2971, 2986, 3005 |
| Bsp19I | CCATGG | 1 cut(s) | 1058 |
| BspANI | GGCC | 5 cut(s) | 186, 293, 485, 620, 1463 |
| BspCNI | CTCAG | 7 cut(s) | 429, 457, 966, 2243, 2862, 3003, 3015 |
| BspFNI | CGCG | 4 cut(s) | 144, 2400, 2430, 2976 |
| BspLI | GGNNCC | 5 cut(s) | 534, 1323, 1810, 2434, 2758 |
| BspMAI | CTGCAG | 2 cut(s) | 155, 2572 |
| BspMI | ACCTGC | 1 cut(s) | 2224 |
| BspPI | GGATC | 5 cut(s) | 2024, 2276, 2751, 2764, 2979 |
| BspQI | GCTCTTC | 1 cut(s) | 833 |
| BspT104I | TTCGAA | 1 cut(s) | 663 |
| BspT107I | GGYRCC | 3 cut(s) | 532, 1321, 2432 |
| BspTI | CTTAAG | 1 cut(s) | 1193 |
| BspTNI | GGTCTC | 1 cut(s) | 2893 |
| BsrDI | GCAATG | 4 cut(s) | 294, 594, 843, 2303 |
| BsrFI | RCCGGY | 1 cut(s) | 620 |
| BsrGI | TGTACA | 1 cut(s) | 2617 |
| BsrI | ACTGG | 5 cut(s) | 231, 348, 1340, 2289, 2913 |
| BssAI | RCCGGY | 1 cut(s) | 620 |
| BssMI | GATC | 9 cut(s) | 1141, 1936, 2029, 2281, 2401, 2756, 2971, 2986, 3005 |
| BssNI | GRCGYC | 3 cut(s) | 533, 1849, 2847 |
| BssSI | CACGAG | 1 cut(s) | 255 |
| BssT1I | CCWWGG | 4 cut(s) | 1058, 1433, 2500, 2602 |
| Bst2BI | CACGAG | 1 cut(s) | 255 |
| Bst2UI | CCWGG | 8 cut(s) | 188, 209, 497, 1466, 1832, 2123, 2245, 2750 |
| Bst4CI | ACNGT | 4 cut(s) | 669, 734, 1568, 2359 |
| Bst6I | CTCTTC | 3 cut(s) | 321, 833, 2408 |
| BstACI | GRCGYC | 3 cut(s) | 533, 1849, 2847 |
| BstAFI | CTTAAG | 1 cut(s) | 1193 |
| BstAUI | TGTACA | 1 cut(s) | 2617 |
| BstBI | TTCGAA | 1 cut(s) | 663 |
| BstDEI | CTNAG | 7 cut(s) | 437, 465, 974, 2230, 2870, 2990, 3002 |
| BstDSI | CCRYGG | 3 cut(s) | 303, 1058, 1765 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1998 |
| BstF5I | GGATG | 8 cut(s) | 313, 595, 1278, 1373, 1827, 2131, 2578, 2758 |
| BstFNI | CGCG | 4 cut(s) | 144, 2400, 2430, 2976 |
| BstH2I | RGCGCY | 2 cut(s) | 536, 1414 |
| BstHHI | GCGC | 5 cut(s) | 535, 1413, 1985, 2265, 2430 |
| BstKTI | GATC | 9 cut(s) | 1144, 1939, 2032, 2284, 2404, 2759, 2974, 2989, 3008 |
| BstMAI | GTCTC | 4 cut(s) | 455, 2087, 2893, 2973 |
| BstMBI | GATC | 9 cut(s) | 1141, 1936, 2029, 2281, 2401, 2756, 2971, 2986, 3005 |
| BstNI | CCWGG | 8 cut(s) | 188, 209, 497, 1466, 1832, 2123, 2245, 2750 |
| BstNSI | RCATGY | 2 cut(s) | 2055, 2840 |
| BstSCI | CCNGG | 9 cut(s) | 186, 207, 495, 1173, 1464, 1830, 2121, 2243, 2748 |
| BstSFI | CTRYAG | 3 cut(s) | 151, 1707, 2568 |
| BstSLI | GKGCMC | 1 cut(s) | 2398 |
| BstUI | CGCG | 4 cut(s) | 144, 2400, 2430, 2976 |
| BstV2I | GAAGAC | 4 cut(s) | 159, 219, 833, 1226 |
| BstX2I | RGATCY | 4 cut(s) | 2029, 2281, 2756, 3005 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 194, 400, 1335 |
| BstYI | RGATCY | 4 cut(s) | 2029, 2281, 2756, 3005 |
| BsuI | GTATCC | 2 cut(s) | 1462, 2859 |
| BsuRI | GGCC | 5 cut(s) | 186, 293, 485, 620, 1463 |
| BtgI | CCRYGG | 3 cut(s) | 303, 1058, 1765 |
| BtrI | CACGTC | 1 cut(s) | 2449 |
| BtsCI | GGATG | 8 cut(s) | 313, 595, 1278, 1373, 1827, 2131, 2578, 2758 |
| BtsIMutI | CAGTG | 2 cut(s) | 739, 2064 |
| BveI | ACCTGC | 1 cut(s) | 2224 |
| CaiI | CAGNNNCTG | 3 cut(s) | 529, 2189, 2671 |
| CfoI | GCGC | 5 cut(s) | 535, 1413, 1985, 2265, 2430 |
| Cfr10I | RCCGGY | 1 cut(s) | 620 |
| Cfr13I | GGNCC | 3 cut(s) | 618, 1462, 2592 |
| CseI | GACGC | 2 cut(s) | 133, 2842 |
| Csp6I | GTAC | 6 cut(s) | 493, 1508, 2249, 2433, 2618, 2816 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 718, 753, 2584, 2619 |
| CviQI | GTAC | 6 cut(s) | 493, 1508, 2249, 2433, 2618, 2816 |
| DdeI | CTNAG | 7 cut(s) | 437, 465, 974, 2230, 2870, 2990, 3002 |
| DinI | GGCGCC | 1 cut(s) | 534 |
| DpnI | GATC | 9 cut(s) | 1143, 1938, 2031, 2283, 2403, 2758, 2973, 2988, 3007 |
| DpnII | GATC | 9 cut(s) | 1141, 1936, 2029, 2281, 2401, 2756, 2971, 2986, 3005 |
| EaeI | YGGCCR | 1 cut(s) | 483 |
| Eam1104I | CTCTTC | 3 cut(s) | 321, 833, 2408 |
| EarI | CTCTTC | 3 cut(s) | 321, 833, 2408 |
| EciI | GGCGGA | 1 cut(s) | 1149 |
| Eco130I | CCWWGG | 4 cut(s) | 1058, 1433, 2500, 2602 |
| Eco24I | GRGCYC | 1 cut(s) | 609 |
| Eco31I | GGTCTC | 1 cut(s) | 2893 |
| Eco47I | GGWCC | 1 cut(s) | 2592 |
| Eco57I | CTGAAG | 6 cut(s) | 345, 882, 998, 1608, 2088, 2648 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1998 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1462 |
| EcoRII | CCWGG | 8 cut(s) | 186, 207, 495, 1464, 1830, 2121, 2243, 2748 |
| EcoT14I | CCWWGG | 4 cut(s) | 1058, 1433, 2500, 2602 |
| EcoT22I | ATGCAT | 3 cut(s) | 705, 1188, 2057 |
| EcoT38I | GRGCYC | 1 cut(s) | 609 |
| EgeI | GGCGCC | 1 cut(s) | 534 |
| EheI | GGCGCC | 1 cut(s) | 534 |
| ErhI | CCWWGG | 4 cut(s) | 1058, 1433, 2500, 2602 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 885, 917, 2783, 2815 |
| FaqI | GGGAC | 3 cut(s) | 190, 1860, 2183 |
| FauI | CCCGC | 2 cut(s) | 616, 1141 |
| FauNDI | CATATG | 1 cut(s) | 2109 |
| FbaI | TGATCA | 1 cut(s) | 1141 |
| FblI | GTMKAC | 1 cut(s) | 2850 |
| FokI | GGATG | 8 cut(s) | 320, 602, 1285, 1360, 1814, 2138, 2565, 2765 |
| FriOI | GRGCYC | 1 cut(s) | 609 |
| FspAI | RTGCGCAY | 1 cut(s) | 2264 |
| FspBI | CTAG | 8 cut(s) | 14, 947, 1434, 1536, 2313, 2481, 2501, 3025 |
| FspI | TGCGCA | 2 cut(s) | 1984, 2264 |
| GlaI | GCGC | 5 cut(s) | 534, 1412, 1984, 2264, 2429 |
| GsaI | CCCAGC | 1 cut(s) | 648 |
| GsuI | CTGGAG | 3 cut(s) | 365, 1853, 2930 |
| HaeII | RGCGCY | 2 cut(s) | 536, 1414 |
| HaeIII | GGCC | 5 cut(s) | 186, 293, 485, 620, 1463 |
| HapII | CCGG | 5 cut(s) | 621, 1175, 2090, 2582, 2969 |
| HgaI | GACGC | 2 cut(s) | 133, 2842 |
| HhaI | GCGC | 5 cut(s) | 535, 1413, 1985, 2265, 2430 |
| Hin1I | GRCGYC | 3 cut(s) | 533, 1849, 2847 |
| Hin6I | GCGC | 5 cut(s) | 533, 1411, 1983, 2263, 2428 |
| HinP1I | GCGC | 5 cut(s) | 533, 1411, 1983, 2263, 2428 |
| HincII | GTYRAC | 3 cut(s) | 1564, 1918, 2851 |
| HindII | GTYRAC | 3 cut(s) | 1564, 1918, 2851 |
| HindIII | AAGCTT | 3 cut(s) | 56, 1010, 2174 |
| HinfI | GANTC | 9 cut(s) | 104, 241, 314, 331, 374, 869, 1099, 2575, 2822 |
| HpaII | CCGG | 5 cut(s) | 621, 1175, 2090, 2582, 2969 |
| HphI | GGTGA | 7 cut(s) | 367, 794, 2079, 2111, 2359, 2558, 2572 |
| Hpy188I | TCNGA | 9 cut(s) | 246, 325, 438, 641, 874, 1813, 2165, 2993, 3005 |
| Hpy188III | TCNNGA | 7 cut(s) | 101, 335, 791, 1067, 1757, 1997, 2232 |
| Hpy99I | CGWCG | 4 cut(s) | 149, 1854, 2852, 2855 |
| HpyCH4III | ACNGT | 4 cut(s) | 669, 734, 1568, 2359 |
| HpyCH4IV | ACGT | 3 cut(s) | 1849, 2448, 2847 |
| HpyF3I | CTNAG | 7 cut(s) | 437, 465, 974, 2230, 2870, 2990, 3002 |
| HpySE526I | ACGT | 3 cut(s) | 1849, 2448, 2847 |
| Hsp92I | GRCGYC | 3 cut(s) | 533, 1849, 2847 |
| HspAI | GCGC | 5 cut(s) | 533, 1411, 1983, 2263, 2428 |
| KasI | GGCGCC | 1 cut(s) | 532 |
| KpnI | GGTACC | 1 cut(s) | 2436 |
| Ksp22I | TGATCA | 1 cut(s) | 1141 |
| Kzo9I | GATC | 9 cut(s) | 1141, 1936, 2029, 2281, 2401, 2756, 2971, 2986, 3005 |
| LguI | GCTCTTC | 1 cut(s) | 833 |
| LmnI | GCTCC | 9 cut(s) | 416, 499, 658, 916, 943, 1355, 1397, 2180, 2425 |
| LweI | GCATC | 8 cut(s) | 209, 469, 580, 1836, 2260, 2442, 2474, 2653 |
| MaeI | CTAG | 8 cut(s) | 14, 947, 1434, 1536, 2313, 2481, 2501, 3025 |
| MaeII | ACGT | 3 cut(s) | 1849, 2448, 2847 |
| MaeIII | GTNAC | 5 cut(s) | 248, 880, 985, 2380, 2843 |
| MalI | GATC | 9 cut(s) | 1143, 1938, 2031, 2283, 2403, 2758, 2973, 2988, 3007 |
| MboI | GATC | 9 cut(s) | 1141, 1936, 2029, 2281, 2401, 2756, 2971, 2986, 3005 |
| MfeI | CAATTG | 1 cut(s) | 777 |
| MflI | RGATCY | 4 cut(s) | 2029, 2281, 2756, 3005 |
| MhlI | GDGCHC | 2 cut(s) | 609, 2398 |
| Mly113I | GGCGCC | 1 cut(s) | 533 |
| MlyI | GAGTC | 1 cut(s) | 383 |
| MmeI | TCCRAC | 1 cut(s) | 2901 |
| Mph1103I | ATGCAT | 3 cut(s) | 705, 1188, 2057 |
| MroXI | GAANNNNTTC | 2 cut(s) | 330, 1575 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1965, 2124, 2768, 2841 |
| MspA1I | CMGCKG | 1 cut(s) | 2186 |
| MspCI | CTTAAG | 1 cut(s) | 1193 |
| MspI | CCGG | 5 cut(s) | 621, 1175, 2090, 2582, 2969 |
| MspR9I | CCNGG | 9 cut(s) | 188, 209, 497, 1175, 1466, 1832, 2123, 2245, 2750 |
| MunI | CAATTG | 1 cut(s) | 777 |
| Mva1269I | GAATGC | 3 cut(s) | 432, 1178, 1253 |
| MvaI | CCWGG | 8 cut(s) | 188, 209, 497, 1466, 1832, 2123, 2245, 2750 |
| MvnI | CGCG | 4 cut(s) | 144, 2400, 2430, 2976 |
| NarI | GGCGCC | 1 cut(s) | 533 |
| NciI | CCSGG | 1 cut(s) | 1175 |
| NcoI | CCATGG | 1 cut(s) | 1058 |
| NdeI | CATATG | 1 cut(s) | 2109 |
| NdeII | GATC | 9 cut(s) | 1141, 1936, 2029, 2281, 2401, 2756, 2971, 2986, 3005 |
| NlaIV | GGNNCC | 5 cut(s) | 534, 1323, 1810, 2434, 2758 |
| NmeAIII | GCCGAG | 2 cut(s) | 313, 628 |
| NmuCI | GTSAC | 2 cut(s) | 880, 2843 |
| NsbI | TGCGCA | 2 cut(s) | 1984, 2264 |
| NsiI | ATGCAT | 3 cut(s) | 705, 1188, 2057 |
| NspI | RCATGY | 2 cut(s) | 2055, 2840 |
| NspV | TTCGAA | 1 cut(s) | 663 |
| PacI | TTAATTAA | 1 cut(s) | 2325 |
| PaeI | GCATGC | 2 cut(s) | 2055, 2840 |
| PciSI | GCTCTTC | 1 cut(s) | 833 |
| PctI | GAATGC | 3 cut(s) | 432, 1178, 1253 |
| PdmI | GAANNNNTTC | 2 cut(s) | 330, 1575 |
| PfeI | GAWTC | 8 cut(s) | 104, 241, 314, 331, 869, 1099, 2575, 2822 |
| PflFI | GACNNNGTC | 2 cut(s) | 1851, 2696 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2044, 2749 |
| PfoI | TCCNGGA | 1 cut(s) | 1830 |
| PleI | GAGTC | 1 cut(s) | 382 |
| PluTI | GGCGCC | 1 cut(s) | 536 |
| PpsI | GAGTC | 1 cut(s) | 382 |
| PshBI | ATTAAT | 3 cut(s) | 2058, 2325, 2952 |
| Psp6I | CCWGG | 8 cut(s) | 186, 207, 495, 1464, 1830, 2121, 2243, 2748 |
| PspFI | CCCAGC | 1 cut(s) | 644 |
| PspGI | CCWGG | 8 cut(s) | 186, 207, 495, 1464, 1830, 2121, 2243, 2748 |
| PspN4I | GGNNCC | 5 cut(s) | 534, 1323, 1810, 2434, 2758 |
| PspPI | GGNCC | 3 cut(s) | 618, 1462, 2592 |
| PstI | CTGCAG | 2 cut(s) | 155, 2572 |
| PstNI | CAGNNNCTG | 3 cut(s) | 529, 2189, 2671 |
| PsuI | RGATCY | 4 cut(s) | 2029, 2281, 2756, 3005 |
| PsyI | GACNNNGTC | 2 cut(s) | 1851, 2696 |
| PvuII | CAGCTG | 1 cut(s) | 2186 |
| RsaI | GTAC | 6 cut(s) | 494, 1509, 2250, 2434, 2619, 2817 |
| RsaNI | GTAC | 6 cut(s) | 493, 1508, 2249, 2433, 2618, 2816 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1965, 2124, 2768, 2841 |
| SalI | GTCGAC | 1 cut(s) | 2849 |
| SapI | GCTCTTC | 1 cut(s) | 833 |
| Sau3AI | GATC | 9 cut(s) | 1141, 1936, 2029, 2281, 2401, 2756, 2971, 2986, 3005 |
| Sau96I | GGNCC | 3 cut(s) | 618, 1462, 2592 |
| SchI | GAGTC | 1 cut(s) | 383 |
| ScrFI | CCNGG | 9 cut(s) | 188, 209, 497, 1175, 1466, 1832, 2123, 2245, 2750 |
| SduI | GDGCHC | 2 cut(s) | 609, 2398 |
| SfaNI | GCATC | 8 cut(s) | 209, 469, 580, 1836, 2260, 2442, 2474, 2653 |
| SfcI | CTRYAG | 3 cut(s) | 151, 1707, 2568 |
| SfoI | GGCGCC | 1 cut(s) | 534 |
| SfuI | TTCGAA | 1 cut(s) | 663 |
| SgrDI | CGTCGACG | 1 cut(s) | 2849 |
| SinI | GGWCC | 1 cut(s) | 2592 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1965, 2124, 2768, 2841 |
| SmlI | CTYRAG | 3 cut(s) | 99, 791, 1193 |
| SmoI | CTYRAG | 3 cut(s) | 99, 791, 1193 |
| SphI | GCATGC | 2 cut(s) | 2055, 2840 |
| SspDI | GGCGCC | 1 cut(s) | 532 |
| SspMI | CTAG | 8 cut(s) | 14, 947, 1434, 1536, 2313, 2481, 2501, 3025 |
| StyD4I | CCNGG | 9 cut(s) | 186, 207, 495, 1173, 1464, 1830, 2121, 2243, 2748 |
| StyI | CCWWGG | 4 cut(s) | 1058, 1433, 2500, 2602 |
| TaaI | ACNGT | 4 cut(s) | 669, 734, 1568, 2359 |
| TaiI | ACGT | 3 cut(s) | 1852, 2451, 2850 |
| TaqI | TCGA | 7 cut(s) | 107, 663, 1093, 1714, 1939, 2587, 2850 |
| TatI | WGTACW | 2 cut(s) | 2617, 2815 |
| TauI | GCSGC | 4 cut(s) | 485, 602, 676, 2465 |
| TfiI | GAWTC | 8 cut(s) | 104, 241, 314, 331, 869, 1099, 2575, 2822 |
| TscAI | CASTG | 2 cut(s) | 739, 2071 |
| TseFI | GTSAC | 2 cut(s) | 880, 2843 |
| Tsp45I | GTSAC | 2 cut(s) | 880, 2843 |
| TspDTI | ATGAA | 8 cut(s) | 903, 1171, 1736, 1983, 2121, 2292, 2814, 2873 |
| TspGWI | ACGGA | 5 cut(s) | 231, 320, 1754, 1967, 2359 |
| TspRI | CASTG | 2 cut(s) | 739, 2071 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1851, 2696 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2044, 2749 |
| Vha464I | CTTAAG | 1 cut(s) | 1193 |
| VneI | GTGCAC | 1 cut(s) | 2394 |
| VpaK11BI | GGWCC | 1 cut(s) | 2592 |
| VspI | ATTAAT | 3 cut(s) | 2058, 2325, 2952 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1998 |
| XapI | RAATTY | 5 cut(s) | 1897, 1971, 2299, 2803, 2914 |
| XceI | RCATGY | 2 cut(s) | 2055, 2840 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2750 |
| XmaJI | CCTAGG | 2 cut(s) | 1433, 2500 |
| XmiI | GTMKAC | 1 cut(s) | 2850 |
| XmnI | GAANNNNTTC | 2 cut(s) | 330, 1575 |
| XspI | CTAG | 8 cut(s) | 14, 947, 1434, 1536, 2313, 2481, 2501, 3025 |
| ZraI | GACGTC | 2 cut(s) | 1850, 2848 |
| Zsp2I | ATGCAT | 3 cut(s) | 705, 1188, 2057 |