DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G68990 AT1G68990 |
| fragaria_vesca | FvH4_4g28970 FvH4_4g28970 FvH4_4g28970 FvH4_4g28970 FvH4_4g28970 |
| malus_domestica | MD13G1055100.v1.1 MD16G1054000.v1.1 |
| prunus_persica | Prupe.1G295700_v2.0.a1 Prupe.1G295700_v2.0.a1 |
| pyrus_communis | pycom13g04880 pycom16g04700 |
| rosa_chinensis | RchiOBHm_Chr4g0437111 |
| rosa_laevigata | RLG00000006467 |
| rosa_multiflora | Rmu_co8109606.1_g000001 Rmu_ssc0000006.1_g000008 |
| rosa_roxburghii | Rroxscaffold_5G00378180 |
| rosa_rugosa | Rorug04G0298100 |
| rosa_samantha | Rh4AG352900 Rh4BG362400 Rh4CG376600 Rh4DG356400 |
| rosa_wichuraiana | Rw4G030900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 350, 520 |
| AccI | GTMKAC | 1 cut(s) | 3321 |
| AccII | CGCG | 3 cut(s) | 2905, 2919, 2925 |
| AccIII | TCCGGA | 1 cut(s) | 2250 |
| AclWI | GGATC | 6 cut(s) | 41, 1528, 2086, 2674, 3245, 3258 |
| AcoI | YGGCCR | 3 cut(s) | 397, 904, 1813 |
| AcsI | RAATTY | 3 cut(s) | 471, 1661, 1878 |
| AcuI | CTGAAG | 1 cut(s) | 798 |
| AcvI | CACGTG | 1 cut(s) | 1692 |
| AdeI | CACNNNGTG | 1 cut(s) | 3414 |
| AfaI | GTAC | 6 cut(s) | 819, 1223, 1928, 2182, 2502, 2888 |
| AflIII | ACRYGT | 1 cut(s) | 1218 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3117 |
| AjiI | CACGTC | 1 cut(s) | 2717 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1809, 1841 |
| AleI | CACNNNNGTG | 1 cut(s) | 95 |
| Alw21I | GWGCWC | 3 cut(s) | 335, 939, 1711 |
| Alw26I | GTCTC | 5 cut(s) | 1413, 2223, 2413, 3300, 3389 |
| Alw44I | GTGCAC | 1 cut(s) | 935 |
| AlwI | GGATC | 6 cut(s) | 41, 1528, 2086, 2674, 3245, 3258 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 23, 926, 3269, 3388 |
| Aor13HI | TCCGGA | 1 cut(s) | 2250 |
| ApaI | GGGCCC | 1 cut(s) | 30 |
| ApaLI | GTGCAC | 1 cut(s) | 935 |
| ApoI | RAATTY | 3 cut(s) | 471, 1661, 1878 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 1850, 1882, 2618, 2650, 3064, 3096 |
| AseI | ATTAAT | 1 cut(s) | 1806 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2947, 2991 |
| AspLEI | GCGC | 3 cut(s) | 490, 779, 2905 |
| AsuC2I | CCSGG | 4 cut(s) | 174, 479, 805, 2350 |
| AsuHPI | GGTGA | 6 cut(s) | 1279, 1302, 2005, 2219, 2234, 3400 |
| AsuII | TTCGAA | 2 cut(s) | 230, 2995 |
| AvaII | GGWCC | 7 cut(s) | 973, 1241, 1286, 1718, 2747, 2831, 3284 |
| AxyI | CCTNAGG | 2 cut(s) | 246, 3345 |
| BaeGI | GKGCMC | 3 cut(s) | 30, 939, 2493 |
| BalI | TGGCCA | 2 cut(s) | 906, 1815 |
| BamHI | GGATCC | 1 cut(s) | 3250 |
| BanII | GRGCYC | 5 cut(s) | 30, 335, 1711, 2104, 2984 |
| BauI | CACGAG | 1 cut(s) | 2653 |
| BbrPI | CACGTG | 1 cut(s) | 1692 |
| BbsI | GAAGAC | 2 cut(s) | 620, 2364 |
| Bbv12I | GWGCWC | 3 cut(s) | 335, 939, 1711 |
| BbvCI | CCTCAGC | 1 cut(s) | 1722 |
| BccI | CCATC | 9 cut(s) | 77, 199, 763, 948, 1156, 2588, 2693, 2726, 2750 |
| BceAI | ACGGC | 8 cut(s) | 295, 412, 1560, 2757, 3024, 3072, 3123, 3162 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3301, 3335 |
| BciVI | GTATCC | 3 cut(s) | 282, 1693, 1831 |
| BclI | TGATCA | 2 cut(s) | 2155, 3229 |
| BcnI | CCSGG | 4 cut(s) | 174, 479, 805, 2350 |
| BcoDI | GTCTC | 5 cut(s) | 1413, 2223, 2413, 3300, 3389 |
| BfaI | CTAG | 7 cut(s) | 954, 1200, 1302, 2468, 2751, 3165, 3201 |
| BfmI | CTRYAG | 3 cut(s) | 599, 3133, 3157 |
| BfuI | GTATCC | 3 cut(s) | 282, 1693, 1831 |
| Bme18I | GGWCC | 7 cut(s) | 973, 1241, 1286, 1718, 2747, 2831, 3284 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3117 |
| BmgBI | CACGTC | 1 cut(s) | 2717 |
| BmrI | ACTGGG | 5 cut(s) | 127, 530, 2394, 2412, 3406 |
| BmuI | ACTGGG | 5 cut(s) | 127, 530, 2394, 2412, 3406 |
| BpiI | GAAGAC | 2 cut(s) | 620, 2364 |
| BpmI | CTGGAG | 1 cut(s) | 3410 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1116, 1722 |
| Bpu14I | TTCGAA | 2 cut(s) | 230, 2995 |
| BpuEI | CTTGAG | 1 cut(s) | 2202 |
| BpuMI | CCSGG | 4 cut(s) | 174, 479, 805, 2350 |
| BsaAI | YACGTR | 3 cut(s) | 1692, 2168, 2519 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1166 |
| BsaI | GGTCTC | 2 cut(s) | 2413, 3389 |
| BsaWI | WCCGGW | 2 cut(s) | 1517, 2250 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 162, 192, 3091, 3109, 3121, 3139 |
| Bse118I | RCCGGY | 1 cut(s) | 145 |
| Bse21I | CCTNAGG | 2 cut(s) | 246, 3345 |
| Bse3DI | GCAATG | 1 cut(s) | 2011 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1166 |
| BseAI | TCCGGA | 1 cut(s) | 2250 |
| BseGI | GGATG | 8 cut(s) | 433, 457, 507, 841, 2599, 2704, 2737, 2905 |
| BseJI | GATNNNNATC | 1 cut(s) | 1166 |
| BseMI | GCAATG | 1 cut(s) | 2011 |
| BseMII | CTCAG | 9 cut(s) | 260, 383, 773, 1121, 1601, 1736, 2418, 3261, 3359 |
| BseRI | GAGGAG | 3 cut(s) | 1042, 1664, 3407 |
| BseSI | GKGCMC | 3 cut(s) | 30, 939, 2493 |
| BseYI | CCCAGC | 3 cut(s) | 651, 976, 2393 |
| BsgI | GTGCAG | 4 cut(s) | 809, 1179, 1353, 1672 |
| Bsh1236I | CGCG | 3 cut(s) | 2905, 2919, 2925 |
| BsiHKAI | GWGCWC | 3 cut(s) | 335, 939, 1711 |
| BsiSI | CCGG | 7 cut(s) | 146, 174, 479, 804, 1518, 2251, 2349 |
| BsmAI | GTCTC | 5 cut(s) | 1413, 2223, 2413, 3300, 3389 |
| BsmI | GAATGC | 1 cut(s) | 1857 |
| Bso31I | GGTCTC | 2 cut(s) | 2413, 3389 |
| Bsp119I | TTCGAA | 2 cut(s) | 230, 2995 |
| Bsp120I | GGGCCC | 1 cut(s) | 26 |
| Bsp1286I | GDGCHC | 7 cut(s) | 30, 335, 939, 1711, 2104, 2493, 2984 |
| Bsp13I | TCCGGA | 1 cut(s) | 2250 |
| Bsp1407I | TGTACA | 2 cut(s) | 1221, 1926 |
| Bsp19I | CCATGG | 1 cut(s) | 65 |
| BspCNI | CTCAG | 9 cut(s) | 259, 382, 772, 1120, 1600, 1735, 2419, 3262, 3358 |
| BspEI | TCCGGA | 1 cut(s) | 2250 |
| BspFNI | CGCG | 3 cut(s) | 2905, 2919, 2925 |
| BspHI | TCATGA | 2 cut(s) | 1033, 1377 |
| BspMAI | CTGCAG | 1 cut(s) | 603 |
| BspPI | GGATC | 6 cut(s) | 41, 1528, 2086, 2674, 3245, 3258 |
| BspQI | GCTCTTC | 1 cut(s) | 1488 |
| BspT104I | TTCGAA | 2 cut(s) | 230, 2995 |
| BspTNI | GGTCTC | 2 cut(s) | 2413, 3389 |
| BsrDI | GCAATG | 1 cut(s) | 2011 |
| BsrFI | RCCGGY | 1 cut(s) | 145 |
| BsrGI | TGTACA | 2 cut(s) | 1221, 1926 |
| BssAI | RCCGGY | 1 cut(s) | 145 |
| BssSI | CACGAG | 1 cut(s) | 2653 |
| BssT1I | CCWWGG | 1 cut(s) | 65 |
| Bst2BI | CACGAG | 1 cut(s) | 2653 |
| Bst4CI | ACNGT | 7 cut(s) | 1226, 1374, 1572, 1603, 2043, 2992, 3188 |
| Bst6I | CTCTTC | 1 cut(s) | 1488 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 307, 427, 451, 598 |
| BstAUI | TGTACA | 2 cut(s) | 1221, 1926 |
| BstBAI | YACGTR | 3 cut(s) | 1692, 2168, 2519 |
| BstBI | TTCGAA | 2 cut(s) | 230, 2995 |
| BstDSI | CCRYGG | 4 cut(s) | 65, 2296, 2773, 3139 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3285 |
| BstF5I | GGATG | 8 cut(s) | 433, 457, 507, 841, 2599, 2704, 2737, 2905 |
| BstFNI | CGCG | 3 cut(s) | 2905, 2919, 2925 |
| BstHHI | GCGC | 3 cut(s) | 490, 779, 2905 |
| BstMAI | GTCTC | 5 cut(s) | 1413, 2223, 2413, 3300, 3389 |
| BstNSI | RCATGY | 2 cut(s) | 1213, 1222 |
| BstSFI | CTRYAG | 3 cut(s) | 599, 3133, 3157 |
| BstSLI | GKGCMC | 3 cut(s) | 30, 939, 2493 |
| BstUI | CGCG | 3 cut(s) | 2905, 2919, 2925 |
| BstV2I | GAAGAC | 2 cut(s) | 620, 2364 |
| BstX2I | RGATCY | 4 cut(s) | 1520, 2091, 2666, 3250 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 863, 947, 2375 |
| BstYI | RGATCY | 4 cut(s) | 1520, 2091, 2666, 3250 |
| Bsu36I | CCTNAGG | 2 cut(s) | 246, 3345 |
| BsuI | GTATCC | 3 cut(s) | 282, 1693, 1831 |
| BtgI | CCRYGG | 4 cut(s) | 65, 2296, 2773, 3139 |
| BtrI | CACGTC | 1 cut(s) | 2717 |
| BtsCI | GGATG | 8 cut(s) | 433, 457, 507, 841, 2599, 2704, 2737, 2905 |
| BtsI | GCAGTG | 1 cut(s) | 53 |
| BtsIMutI | CAGTG | 5 cut(s) | 53, 1177, 1577, 1608, 3366 |
| CaiI | CAGNNNCTG | 4 cut(s) | 23, 926, 3269, 3388 |
| CciI | TCATGA | 2 cut(s) | 1033, 1377 |
| CfoI | GCGC | 3 cut(s) | 490, 779, 2905 |
| Cfr10I | RCCGGY | 1 cut(s) | 145 |
| CseI | GACGC | 3 cut(s) | 2925, 2931, 3332 |
| Csp6I | GTAC | 6 cut(s) | 818, 1222, 1927, 2181, 2501, 2887 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 2269, 2304, 2692, 2725, 2727, 2760 |
| CviQI | GTAC | 6 cut(s) | 818, 1222, 1927, 2181, 2501, 2887 |
| DraIII | CACNNNGTG | 1 cut(s) | 3414 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3117 |
| EaeI | YGGCCR | 3 cut(s) | 397, 904, 1813 |
| Eam1104I | CTCTTC | 1 cut(s) | 1488 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3117 |
| EarI | CTCTTC | 1 cut(s) | 1488 |
| EciI | GGCGGA | 3 cut(s) | 150, 1392, 3267 |
| Ecl136II | GAGCTC | 2 cut(s) | 333, 1709 |
| Eco130I | CCWWGG | 1 cut(s) | 65 |
| Eco24I | GRGCYC | 5 cut(s) | 30, 335, 1711, 2104, 2984 |
| Eco31I | GGTCTC | 2 cut(s) | 2413, 3389 |
| Eco47I | GGWCC | 7 cut(s) | 973, 1241, 1286, 1718, 2747, 2831, 3284 |
| Eco53kI | GAGCTC | 2 cut(s) | 333, 1709 |
| Eco57I | CTGAAG | 1 cut(s) | 798 |
| Eco72I | CACGTG | 1 cut(s) | 1692 |
| Eco81I | CCTNAGG | 2 cut(s) | 246, 3345 |
| EcoICRI | GAGCTC | 2 cut(s) | 333, 1709 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3285 |
| EcoO109I | RGGNCCY | 4 cut(s) | 27, 1718, 2831, 3222 |
| EcoT14I | CCWWGG | 1 cut(s) | 65 |
| EcoT22I | ATGCAT | 1 cut(s) | 1215 |
| EcoT38I | GRGCYC | 5 cut(s) | 30, 335, 1711, 2104, 2984 |
| ErhI | CCWWGG | 1 cut(s) | 65 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1311, 1343, 1809, 1841 |
| FauNDI | CATATG | 2 cut(s) | 423, 1279 |
| FbaI | TGATCA | 2 cut(s) | 2155, 3229 |
| FblI | GTMKAC | 1 cut(s) | 3321 |
| FokI | GGATG | 8 cut(s) | 420, 444, 494, 828, 2606, 2711, 2744, 2912 |
| FriOI | GRGCYC | 5 cut(s) | 30, 335, 1711, 2104, 2984 |
| FspBI | CTAG | 7 cut(s) | 954, 1200, 1302, 2468, 2751, 3165, 3201 |
| GlaI | GCGC | 3 cut(s) | 489, 778, 2904 |
| GsaI | CCCAGC | 3 cut(s) | 655, 980, 2397 |
| GsuI | CTGGAG | 1 cut(s) | 3410 |
| HapII | CCGG | 7 cut(s) | 146, 174, 479, 804, 1518, 2251, 2349 |
| HgaI | GACGC | 3 cut(s) | 2925, 2931, 3332 |
| HhaI | GCGC | 3 cut(s) | 490, 779, 2905 |
| Hin6I | GCGC | 3 cut(s) | 488, 777, 2903 |
| HinP1I | GCGC | 3 cut(s) | 488, 777, 2903 |
| HincII | GTYRAC | 3 cut(s) | 6, 2332, 3322 |
| HindII | GTYRAC | 3 cut(s) | 6, 2332, 3322 |
| HindIII | AAGCTT | 2 cut(s) | 1118, 1320 |
| HpaI | GTTAAC | 1 cut(s) | 2332 |
| HpaII | CCGG | 7 cut(s) | 146, 174, 479, 804, 1518, 2251, 2349 |
| HphI | GGTGA | 6 cut(s) | 1279, 1302, 2005, 2219, 2234, 3400 |
| Hpy166II | GTNNAC | 9 cut(s) | 6, 937, 1244, 1894, 1929, 2332, 2368, 2714, 3322 |
| Hpy188I | TCNGA | 7 cut(s) | 1590, 2428, 2979, 3105, 3129, 3234, 3271 |
| Hpy188III | TCNNGA | 9 cut(s) | 116, 248, 921, 1034, 1378, 1524, 2251, 2468, 3263 |
| Hpy8I | GTNNAC | 9 cut(s) | 6, 937, 1244, 1894, 1929, 2332, 2368, 2714, 3322 |
| Hpy99I | CGWCG | 3 cut(s) | 3093, 3183, 3326 |
| HpyAV | CCTTC | 9 cut(s) | 64, 855, 903, 1085, 1284, 1564, 1835, 2904, 3241 |
| HpyCH4III | ACNGT | 7 cut(s) | 1226, 1374, 1572, 1603, 2043, 2992, 3188 |
| HpyCH4IV | ACGT | 6 cut(s) | 1691, 2167, 2179, 2286, 2518, 2716 |
| HpySE526I | ACGT | 6 cut(s) | 1691, 2167, 2179, 2286, 2518, 2716 |
| HspAI | GCGC | 3 cut(s) | 488, 777, 2903 |
| Kpn2I | TCCGGA | 1 cut(s) | 2250 |
| KroI | GCCGGC | 1 cut(s) | 145 |
| KroNI | GCCGGC | 1 cut(s) | 147 |
| Ksp22I | TGATCA | 2 cut(s) | 2155, 3229 |
| KspAI | GTTAAC | 1 cut(s) | 2332 |
| LguI | GCTCTTC | 1 cut(s) | 1488 |
| MaeI | CTAG | 7 cut(s) | 954, 1200, 1302, 2468, 2751, 3165, 3201 |
| MaeII | ACGT | 6 cut(s) | 1691, 2167, 2179, 2286, 2518, 2716 |
| MaeIII | GTNAC | 5 cut(s) | 405, 1082, 1342, 2207, 3182 |
| MflI | RGATCY | 4 cut(s) | 1520, 2091, 2666, 3250 |
| MhlI | GDGCHC | 7 cut(s) | 30, 335, 939, 1711, 2104, 2493, 2984 |
| MlsI | TGGCCA | 2 cut(s) | 906, 1815 |
| MluNI | TGGCCA | 2 cut(s) | 906, 1815 |
| MlyI | GAGTC | 6 cut(s) | 550, 655, 1039, 2561, 3109, 3127 |
| MmeI | TCCRAC | 6 cut(s) | 1039, 1643, 2957, 3083, 3089, 3107 |
| Mox20I | TGGCCA | 2 cut(s) | 906, 1815 |
| Mph1103I | ATGCAT | 1 cut(s) | 1215 |
| MroI | TCCGGA | 1 cut(s) | 2250 |
| MroNI | GCCGGC | 1 cut(s) | 145 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2947, 2991 |
| MscI | TGGCCA | 2 cut(s) | 906, 1815 |
| MseI | TTAA | 8 cut(s) | 1022, 1076, 1544, 1806, 1980, 2240, 2331, 2456 |
| MslI | CAYNNNNRTG | 4 cut(s) | 95, 231, 945, 1468 |
| Msp20I | TGGCCA | 2 cut(s) | 906, 1815 |
| MspA1I | CMGCKG | 2 cut(s) | 11, 2450 |
| MspI | CCGG | 7 cut(s) | 146, 174, 479, 804, 1518, 2251, 2349 |
| Mva1269I | GAATGC | 1 cut(s) | 1857 |
| MvnI | CGCG | 3 cut(s) | 2905, 2919, 2925 |
| NaeI | GCCGGC | 1 cut(s) | 147 |
| NciI | CCSGG | 4 cut(s) | 174, 479, 805, 2350 |
| NcoI | CCATGG | 1 cut(s) | 65 |
| NdeI | CATATG | 2 cut(s) | 423, 1279 |
| NgoMIV | GCCGGC | 1 cut(s) | 145 |
| NmuCI | GTSAC | 2 cut(s) | 405, 2207 |
| NsiI | ATGCAT | 1 cut(s) | 1215 |
| NspI | RCATGY | 2 cut(s) | 1213, 1222 |
| NspV | TTCGAA | 2 cut(s) | 230, 2995 |
| OliI | CACNNNNGTG | 1 cut(s) | 95 |
| PaeI | GCATGC | 1 cut(s) | 1213 |
| PagI | TCATGA | 2 cut(s) | 1033, 1377 |
| PasI | CCCWGGG | 1 cut(s) | 634 |
| PciI | ACATGT | 1 cut(s) | 1218 |
| PciSI | GCTCTTC | 1 cut(s) | 1488 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3088 |
| PctI | GAATGC | 1 cut(s) | 1857 |
| PdiI | GCCGGC | 1 cut(s) | 147 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2947, 2991 |
| PfeI | GAWTC | 6 cut(s) | 112, 793, 1167, 2931, 2948, 3266 |
| PflFI | GACNNNGTC | 2 cut(s) | 2234, 2363 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 350, 520 |
| PleI | GAGTC | 6 cut(s) | 549, 655, 1038, 2561, 3108, 3126 |
| PmaCI | CACGTG | 1 cut(s) | 1692 |
| PmlI | CACGTG | 1 cut(s) | 1692 |
| PpsI | GAGTC | 6 cut(s) | 549, 655, 1038, 2561, 3108, 3126 |
| Ppu21I | YACGTR | 3 cut(s) | 1692, 2168, 2519 |
| PpuMI | RGGWCCY | 2 cut(s) | 1718, 2831 |
| PscI | ACATGT | 1 cut(s) | 1218 |
| PshBI | ATTAAT | 1 cut(s) | 1806 |
| Psp124BI | GAGCTC | 2 cut(s) | 335, 1711 |
| Psp5II | RGGWCCY | 2 cut(s) | 1718, 2831 |
| PspCI | CACGTG | 1 cut(s) | 1692 |
| PspFI | CCCAGC | 3 cut(s) | 651, 976, 2393 |
| PspOMI | GGGCCC | 1 cut(s) | 26 |
| PspPPI | RGGWCCY | 2 cut(s) | 1718, 2831 |
| PstI | CTGCAG | 1 cut(s) | 603 |
| PstNI | CAGNNNCTG | 4 cut(s) | 23, 926, 3269, 3388 |
| PsuI | RGATCY | 4 cut(s) | 1520, 2091, 2666, 3250 |
| PsyI | GACNNNGTC | 2 cut(s) | 2234, 2363 |
| PvuII | CAGCTG | 1 cut(s) | 2450 |
| RsaI | GTAC | 6 cut(s) | 819, 1223, 1928, 2182, 2502, 2888 |
| RsaNI | GTAC | 6 cut(s) | 818, 1222, 1927, 2181, 2501, 2887 |
| RseI | CAYNNNNRTG | 4 cut(s) | 95, 231, 945, 1468 |
| SacI | GAGCTC | 2 cut(s) | 335, 1711 |
| SalI | GTCGAC | 1 cut(s) | 3320 |
| SapI | GCTCTTC | 1 cut(s) | 1488 |
| SaqAI | TTAA | 8 cut(s) | 1022, 1076, 1544, 1806, 1980, 2240, 2331, 2456 |
| SchI | GAGTC | 6 cut(s) | 550, 655, 1039, 2561, 3109, 3127 |
| SduI | GDGCHC | 7 cut(s) | 30, 335, 939, 1711, 2104, 2493, 2984 |
| SfcI | CTRYAG | 3 cut(s) | 599, 3133, 3157 |
| SfuI | TTCGAA | 2 cut(s) | 230, 2995 |
| SinI | GGWCC | 7 cut(s) | 973, 1241, 1286, 1718, 2747, 2831, 3284 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 95, 231, 945, 1468 |
| SmlI | CTYRAG | 1 cut(s) | 2217 |
| SmoI | CTYRAG | 1 cut(s) | 2217 |
| SphI | GCATGC | 1 cut(s) | 1213 |
| SspI | AATATT | 3 cut(s) | 581, 1070, 1999 |
| SspMI | CTAG | 7 cut(s) | 954, 1200, 1302, 2468, 2751, 3165, 3201 |
| SstI | GAGCTC | 2 cut(s) | 335, 1711 |
| StyI | CCWWGG | 1 cut(s) | 65 |
| TaaI | ACNGT | 7 cut(s) | 1226, 1374, 1572, 1603, 2043, 2992, 3188 |
| TaiI | ACGT | 6 cut(s) | 1694, 2170, 2182, 2289, 2521, 2719 |
| TaqI | TCGA | 5 cut(s) | 230, 1849, 2934, 2995, 3321 |
| TatI | WGTACW | 3 cut(s) | 817, 1221, 1926 |
| TauI | GCSGC | 5 cut(s) | 870, 2583, 2586, 2619, 3078 |
| TfiI | GAWTC | 6 cut(s) | 112, 793, 1167, 2931, 2948, 3266 |
| Tru1I | TTAA | 8 cut(s) | 1022, 1076, 1544, 1806, 1980, 2240, 2331, 2456 |
| Tru9I | TTAA | 8 cut(s) | 1022, 1076, 1544, 1806, 1980, 2240, 2331, 2456 |
| TscAI | CASTG | 5 cut(s) | 60, 1177, 1577, 1608, 3366 |
| TseFI | GTSAC | 2 cut(s) | 405, 2207 |
| Tsp45I | GTSAC | 2 cut(s) | 405, 2207 |
| TspRI | CASTG | 5 cut(s) | 60, 1177, 1577, 1608, 3366 |
| Tth111I | GACNNNGTC | 2 cut(s) | 2234, 2363 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 350, 520 |
| VneI | GTGCAC | 1 cut(s) | 935 |
| VpaK11BI | GGWCC | 7 cut(s) | 973, 1241, 1286, 1718, 2747, 2831, 3284 |
| VspI | ATTAAT | 1 cut(s) | 1806 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3285 |
| XapI | RAATTY | 3 cut(s) | 471, 1661, 1878 |
| XbaI | TCTAGA | 1 cut(s) | 2467 |
| XceI | RCATGY | 2 cut(s) | 1213, 1222 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 202, 1055, 1997 |
| XmiI | GTMKAC | 1 cut(s) | 3321 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2947, 2991 |
| XspI | CTAG | 7 cut(s) | 954, 1200, 1302, 2468, 2751, 3165, 3201 |
| Zsp2I | ATGCAT | 1 cut(s) | 1215 |