FvH4_4g34350

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0010041
Physical Location & Seq
Forward (+)
32189068 .. 32190708
1641 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34350.t1

Sequence Viewer

Length: 1020 bp
ATGGCACAACTTAACGACCACCAACCCTCTATCATTTTTGACGACGACGAAAAAACCCACAATTCCGGGTCGGATCGCTCCGAATCCGACTCCGTTTTCTCGGACCCCTTCGAGGTTTTCACCCGGATCGGATTACTTAAGGCGCAAGAAAATGATCCTCGCTACGTAAACATCAAGAAGCAGTTAGCCGCGGCCATGCAATCCGCCGGAGTAAACGCTAATGTTGTGGCGATTCACCGGAATACTTTCTCCGGTTCGACCAGGCACGCCACGTTGCAAGCACATCGGATTATTGAGAAGGCGGTGGCTGAGAAATGCGGCGGAAACGCCAATGTGGGCTGGGGTTGGTACGGCGGCTCCAGAGATTTGATTTGCCGTACCGTTTTGCATGGCTTCTTTTGTAGCAGATCAGACCAACCCGGGCCTTATGGTATTGGAGTTCACTTGTTTTCTAACAACCATTCTTTTGATTGTGCAAGATCATCAGATGCTGATGAGAATGGGCTGAGGCACATTTTGGTATGTAGAGTGATATTGGGGAAGAGAGAAATGGTGCCGTTTGGATCGAAGCAGTTTAGTCCGAGTTCTATGGAGTTTGATTCTGGTGTGGACAGTCTTGTGAATCCCAAGAGGTTTATCATATGGAGCTCTGACATGAACTCTCATATTCTGCCTCTTTTTGTTGTCAGCTTCAGGGCTCCTGCTAACTTGAGAGATATTCCAAGGAGCATTCAACCGAGTGCTGCTGCTGCTGCAGTAAGACAACCAGCACGCAGGTCTGCTACGTTGAAGGTCACTGATATAATGAACGCATTGGCCGAAGTCTTGCCTGCTCCTAGTATGGTTCTGCTTAAAAAATCTGCCACTGATTTCAGGGCAAAAAGGATAACCAGTGCTCAGCTGATTAGAAGAATGGGTACACTTGCGGGTAAAGAATTGCTGGCTTCGGTGGTGAAAAGCTGTAAAAGGAGCGAGAGTAATCCAATTCACCAGAGGGATGACACTAATAATGGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

340

Amino Acids

37.19

Weight (kDa)

9.38

Isoelectric Point (pI)

54.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 260 - 322 6.8e-09 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23550 AT1G70440 AT1G70440
fragaria_vesca FvH4_4g34350
malus_domestica MD13G1092800.v1.1 MD16G1093700.v1.1
prunus_persica Prupe.1G252800_v2.0.a1
pyrus_communis pycom13g08070 pycom13g08080 pycom16g07970
rosa_chinensis RchiOBHm_Chr4g0443761
rosa_laevigata RLG00000005892
rosa_multiflora Rmu_co8242545.1_g000001 Rmu_sc0042927.1_g000001
rosa_roxburghii Rroxscaffold_5G00384330
rosa_rugosa Rorug04G0347100
rosa_samantha Rh4AG407300 Rh4BG418200 Rh4CG432500 Rh4DG413500
rosa_wichuraiana Rw4G034980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 765
AccB1I GGYRCC 1 cut(s) 553
AccII CGCG 1 cut(s) 191
AciI CCGC 8 cut(s) 189, 191, 204, 302, 318, 321, 354, 926
AclWI GGATC 4 cut(s) 81, 134, 149, 571
AcoI YGGCCR 2 cut(s) 192, 816
AcuI CTGAAG 1 cut(s) 676
AfaI GTAC 3 cut(s) 350, 379, 919
AfiI CCNNNNNNNGG 1 cut(s) 112
AflII CTTAAG 1 cut(s) 137
AgsI TTSAA 2 cut(s) 734, 790
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 4 cut(s) 648, 690, 901, 960
AluI AGCT 4 cut(s) 648, 690, 901, 960
Alw21I GWGCWC 2 cut(s) 650, 898
AlwI GGATC 4 cut(s) 81, 134, 149, 571
AlwNI CAGNNNCTG 1 cut(s) 491
Ama87I CYCGRG 1 cut(s) 419
AoxI GGCC 3 cut(s) 192, 422, 816
ApeKI GCWGC 4 cut(s) 743, 746, 749, 752
Asp700I GAANNNNTTC 1 cut(s) 245
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 2 cut(s) 103, 422
AsuC2I CCSGG 4 cut(s) 67, 124, 420, 421
AsuHPI GGTGA 4 cut(s) 112, 227, 964, 980
AvaI CYCGRG 1 cut(s) 419
AvaII GGWCC 1 cut(s) 103
BanI GGYRCC 1 cut(s) 553
BanII GRGCYC 2 cut(s) 650, 700
BarI GAAGNNNNNNTAC 2 cut(s) 901, 933
Bbv12I GWGCWC 2 cut(s) 650, 898
BbvCI CCTCAGC 1 cut(s) 506
BbvI GCAGC 4 cut(s) 730, 733, 736, 739
BceAI ACGGC 3 cut(s) 360, 367, 541
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BciT130I CCWGG 1 cut(s) 262
BcnI CCSGG 4 cut(s) 67, 124, 420, 421
BfaI CTAG 1 cut(s) 837
BfmI CTRYAG 1 cut(s) 753
BfrI CTTAAG 1 cut(s) 137
BfuAI ACCTGC 1 cut(s) 765
BisI GCNGC 8 cut(s) 189, 192, 319, 355, 744, 747, 750, 753
BlpI GCTNAGC 1 cut(s) 897
BlsI GCNGC 8 cut(s) 190, 193, 320, 356, 745, 748, 751, 754
Bme1390I CCNGG 5 cut(s) 67, 124, 262, 420, 421
Bme18I GGWCC 1 cut(s) 103
BmeT110I CYCGRG 1 cut(s) 419
BmgT120I GGNCC 2 cut(s) 103, 422
BmiI GGNNCC 4 cut(s) 105, 358, 555, 699
BmrFI CCNGG 5 cut(s) 67, 124, 262, 420, 421
BmsI GCATC 1 cut(s) 478
BpmI CTGGAG 1 cut(s) 343
Bpu10I CCTNAGC 1 cut(s) 506
Bpu1102I GCTNAGC 1 cut(s) 897
BpuEI CTTGAG 1 cut(s) 730
BpuMI CCSGG 4 cut(s) 67, 124, 420, 421
BsaAI YACGTR 1 cut(s) 166
BsaJI CCNNGG 3 cut(s) 189, 419, 722
BsaWI WCCGGW 2 cut(s) 237, 251
BsaXI ACNNNNNCTCC 4 cut(s) 341, 371, 961, 991
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 891
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 3 cut(s) 189, 419, 722
BseGI GGATG 1 cut(s) 1003
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMII CTCAG 3 cut(s) 300, 497, 911
BseNI ACTGG 1 cut(s) 891
BseXI GCAGC 4 cut(s) 730, 733, 736, 739
BseYI CCCAGC 1 cut(s) 339
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 3 cut(s) 194, 424, 818
BshNI GGYRCC 1 cut(s) 553
BsiHKAI GWGCWC 2 cut(s) 650, 898
BsiHKCI CYCGRG 1 cut(s) 419
BsiSI CCGG 6 cut(s) 66, 124, 207, 238, 252, 420
BslI CCNNNNNNNGG 1 cut(s) 112
BsmI GAATGC 1 cut(s) 729
BsnI GGCC 3 cut(s) 194, 424, 818
BsoBI CYCGRG 1 cut(s) 419
Bsp1286I GDGCHC 3 cut(s) 650, 700, 898
Bsp143I GATC 6 cut(s) 73, 126, 154, 407, 479, 563
Bsp1720I GCTNAGC 1 cut(s) 897
BspACI CCGC 8 cut(s) 189, 191, 204, 302, 318, 321, 354, 926
BspANI GGCC 3 cut(s) 194, 424, 818
BspCNI CTCAG 3 cut(s) 301, 498, 910
BspFNI CGCG 1 cut(s) 191
BspLI GGNNCC 4 cut(s) 105, 358, 555, 699
BspMAI CTGCAG 1 cut(s) 757
BspMI ACCTGC 1 cut(s) 765
BspPI GGATC 4 cut(s) 81, 134, 149, 571
BspT107I GGYRCC 1 cut(s) 553
BspTI CTTAAG 1 cut(s) 137
BsrI ACTGG 1 cut(s) 891
BssECI CCNNGG 3 cut(s) 189, 419, 722
BssMI GATC 6 cut(s) 73, 126, 154, 407, 479, 563
BssT1I CCWWGG 1 cut(s) 722
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 2 cut(s) 382, 614
Bst6I CTCTTC 1 cut(s) 536
BstAFI CTTAAG 1 cut(s) 137
BstBAI YACGTR 1 cut(s) 166
BstC8I GCNNGC 5 cut(s) 267, 279, 772, 831, 942
BstDEI CTNAG 3 cut(s) 309, 506, 897
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 1003
BstFNI CGCG 1 cut(s) 191
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 6 cut(s) 76, 129, 157, 410, 482, 566
BstMBI GATC 6 cut(s) 73, 126, 154, 407, 479, 563
BstMWI GCNNNNNNNGC 2 cut(s) 749, 752
BstNI CCWGG 1 cut(s) 262
BstSCI CCNGG 5 cut(s) 65, 122, 260, 418, 419
BstSFI CTRYAG 1 cut(s) 753
BstSNI TACGTA 1 cut(s) 166
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 4 cut(s) 730, 733, 736, 739
BsuRI GGCC 3 cut(s) 194, 424, 818
BtgI CCRYGG 1 cut(s) 189
BtsCI GGATG 1 cut(s) 1003
BtsIMutI CAGTG 3 cut(s) 795, 864, 898
BveI ACCTGC 1 cut(s) 765
Cac8I GCNNGC 5 cut(s) 267, 279, 772, 831, 942
CaiI CAGNNNCTG 1 cut(s) 491
CfoI GCGC 1 cut(s) 145
Cfr13I GGNCC 2 cut(s) 103, 422
Cfr42I CCGCGG 1 cut(s) 192
Cfr9I CCCGGG 1 cut(s) 419
Csp6I GTAC 3 cut(s) 349, 378, 918
CviAII CATG 3 cut(s) 196, 389, 655
CviQI GTAC 3 cut(s) 349, 378, 918
DdeI CTNAG 3 cut(s) 309, 506, 897
DpnI GATC 6 cut(s) 75, 128, 156, 409, 481, 565
DpnII GATC 6 cut(s) 73, 126, 154, 407, 479, 563
EaeI YGGCCR 2 cut(s) 192, 816
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
EciI GGCGGA 2 cut(s) 193, 336
Ecl136II GAGCTC 1 cut(s) 648
Eco105I TACGTA 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 722
Eco24I GRGCYC 2 cut(s) 650, 700
Eco47I GGWCC 1 cut(s) 103
Eco53kI GAGCTC 1 cut(s) 648
Eco57I CTGAAG 1 cut(s) 676
Eco88I CYCGRG 1 cut(s) 419
EcoICRI GAGCTC 1 cut(s) 648
EcoRII CCWGG 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 722
EcoT38I GRGCYC 2 cut(s) 650, 700
ErhI CCWWGG 1 cut(s) 722
FaeI CATG 3 cut(s) 199, 392, 658
FatI CATG 3 cut(s) 195, 388, 654
FauI CCCGC 1 cut(s) 919
FauNDI CATATG 1 cut(s) 641
Fnu4HI GCNGC 8 cut(s) 189, 192, 319, 355, 744, 747, 750, 753
FokI GGATG 1 cut(s) 1010
FriOI GRGCYC 2 cut(s) 650, 700
Fsp4HI GCNGC 8 cut(s) 189, 192, 319, 355, 744, 747, 750, 753
FspBI CTAG 1 cut(s) 837
GlaI GCGC 1 cut(s) 144
GluI GCNGC 8 cut(s) 189, 192, 319, 355, 744, 747, 750, 753
GsaI CCCAGC 1 cut(s) 343
GsuI CTGGAG 1 cut(s) 343
HaeIII GGCC 3 cut(s) 194, 424, 818
HapII CCGG 6 cut(s) 66, 124, 207, 238, 252, 420
HhaI GCGC 1 cut(s) 145
Hin1II CATG 3 cut(s) 199, 392, 658
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HinfI GANTC 5 cut(s) 83, 89, 232, 599, 622
HpaII CCGG 6 cut(s) 66, 124, 207, 238, 252, 420
HphI GGTGA 4 cut(s) 112, 227, 964, 980
Hpy166II GTNNAC 5 cut(s) 169, 214, 442, 610, 920
Hpy188III TCNNGA 3 cut(s) 175, 360, 1017
Hpy8I GTNNAC 5 cut(s) 169, 214, 442, 610, 920
Hpy99I CGWCG 2 cut(s) 47, 50
HpyAV CCTTC 3 cut(s) 118, 292, 784
HpyCH4III ACNGT 2 cut(s) 382, 614
HpyCH4IV ACGT 3 cut(s) 165, 272, 785
HpyCH4V TGCA 5 cut(s) 199, 277, 388, 476, 755
HpyF10VI GCNNNNNNNGC 2 cut(s) 749, 752
HpyF3I CTNAG 3 cut(s) 309, 506, 897
HpySE526I ACGT 3 cut(s) 165, 272, 785
Hsp92II CATG 3 cut(s) 199, 392, 658
HspAI GCGC 1 cut(s) 143
KspI CCGCGG 1 cut(s) 192
Kzo9I GATC 6 cut(s) 73, 126, 154, 407, 479, 563
LmnI GCTCC 7 cut(s) 83, 362, 645, 703, 726, 838, 969
Lsp1109I GCAGC 4 cut(s) 730, 733, 736, 739
LweI GCATC 1 cut(s) 478
MaeI CTAG 1 cut(s) 837
MaeII ACGT 3 cut(s) 165, 272, 785
MaeIII GTNAC 1 cut(s) 793
MalI GATC 6 cut(s) 75, 128, 156, 409, 481, 565
MboI GATC 6 cut(s) 73, 126, 154, 407, 479, 563
MboII GAAGA 2 cut(s) 553, 921
MhlI GDGCHC 3 cut(s) 650, 700, 898
MluCI AATT 3 cut(s) 61, 935, 984
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 2 cut(s) 51, 111
MnlI CCTC 7 cut(s) 37, 106, 168, 501, 624, 684, 987
MroXI GAANNNNTTC 1 cut(s) 245
MseI TTAA 3 cut(s) 12, 138, 852
MspA1I CMGCKG 2 cut(s) 191, 901
MspCI CTTAAG 1 cut(s) 137
MspI CCGG 6 cut(s) 66, 124, 207, 238, 252, 420
MspR9I CCNGG 5 cut(s) 67, 124, 262, 420, 421
Mva1269I GAATGC 1 cut(s) 729
MvaI CCWGG 1 cut(s) 262
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 2 cut(s) 749, 752
NciI CCSGG 4 cut(s) 67, 124, 420, 421
NdeI CATATG 1 cut(s) 641
NdeII GATC 6 cut(s) 73, 126, 154, 407, 479, 563
NlaIII CATG 3 cut(s) 199, 392, 658
NlaIV GGNNCC 4 cut(s) 105, 358, 555, 699
NmuCI GTSAC 1 cut(s) 793
PcsI WCGNNNNNNNCGW 1 cut(s) 816
PctI GAATGC 1 cut(s) 729
PdmI GAANNNNTTC 1 cut(s) 245
PfeI GAWTC 4 cut(s) 83, 232, 599, 622
PkrI GCNGC 8 cut(s) 190, 193, 320, 356, 745, 748, 751, 754
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
Ppu21I YACGTR 1 cut(s) 166
Psp124BI GAGCTC 1 cut(s) 650
Psp6I CCWGG 1 cut(s) 260
PspFI CCCAGC 1 cut(s) 339
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 4 cut(s) 105, 358, 555, 699
PspPI GGNCC 2 cut(s) 103, 422
PstI CTGCAG 1 cut(s) 757
PstNI CAGNNNCTG 1 cut(s) 491
PvuII CAGCTG 1 cut(s) 901
RsaI GTAC 3 cut(s) 350, 379, 919
RsaNI GTAC 3 cut(s) 349, 378, 918
SacI GAGCTC 1 cut(s) 650
SacII CCGCGG 1 cut(s) 192
SaqAI TTAA 3 cut(s) 12, 138, 852
SatI GCNGC 8 cut(s) 189, 192, 319, 355, 744, 747, 750, 753
Sau3AI GATC 6 cut(s) 73, 126, 154, 407, 479, 563
Sau96I GGNCC 2 cut(s) 103, 422
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 5 cut(s) 67, 124, 262, 420, 421
SduI GDGCHC 3 cut(s) 650, 700, 898
SfaNI GCATC 1 cut(s) 478
SfcI CTRYAG 1 cut(s) 753
Sfr303I CCGCGG 1 cut(s) 192
SgrBI CCGCGG 1 cut(s) 192
SinI GGWCC 1 cut(s) 103
SmaI CCCGGG 1 cut(s) 421
SmlI CTYRAG 2 cut(s) 137, 709
SmoI CTYRAG 2 cut(s) 137, 709
SnaBI TACGTA 1 cut(s) 166
Sse9I AATT 3 cut(s) 61, 935, 984
SsiI CCGC 8 cut(s) 189, 191, 204, 302, 318, 321, 354, 926
SspMI CTAG 1 cut(s) 837
SstI GAGCTC 1 cut(s) 650
StyD4I CCNGG 5 cut(s) 65, 122, 260, 418, 419
StyI CCWWGG 1 cut(s) 722
TaaI ACNGT 2 cut(s) 382, 614
TaiI ACGT 3 cut(s) 168, 275, 788
TaqI TCGA 3 cut(s) 111, 257, 566
TasI AATT 3 cut(s) 61, 935, 984
TauI GCSGC 4 cut(s) 191, 194, 321, 357
TfiI GAWTC 4 cut(s) 83, 232, 599, 622
Tru1I TTAA 3 cut(s) 12, 138, 852
Tru9I TTAA 3 cut(s) 12, 138, 852
TscAI CASTG 3 cut(s) 802, 871, 898
TseFI GTSAC 1 cut(s) 793
TseI GCWGC 4 cut(s) 743, 746, 749, 752
Tsp45I GTSAC 1 cut(s) 793
TspDTI ATGAA 2 cut(s) 671, 821
TspGWI ACGGA 1 cut(s) 82
TspMI CCCGGG 1 cut(s) 419
TspRI CASTG 3 cut(s) 802, 871, 898
Vha464I CTTAAG 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 103
XmaI CCCGGG 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 245
XspI CTAG 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.