Prupe.1G252800_v2.0.a1

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010041
Physical Location & Seq
Forward (+)
26382900 .. 26385003
2104 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G252800.1

Sequence Viewer

Length: 1014 bp
ATGTCGGCCAATCAAAGCGATTTTGAAGACCAAGTCTCAATGACTGTTGATGATGACGAAATTTCGGGTTATGAGTCCGATTGCGGCGATTCCAATTCCGCTGTTTCGGATCGGTTTGATGTTTTCACTCGGAACGGGATGATCCGGTTGGAGGAAGAGAATTCAGCGCATGACATCATCAAGACGTGCTTTCTTTCGGGCATGGGTTTCGCTGGAGGAGACACCAATCTTGTGGCCATACACAAGAATGTGAGCTCTGATGTGACAAGACAAGCGAGGTTTGAGTCGTTCAAGATTTTCTCTAAGGCGGTGGCTCAGAAATGTGGTGGGAATGCCAACGTGAAGTATGCTTGGTATGGTGGATCAAAAGATGAGCTTTGTGAGATTTTGGTTCATGGATTCAGTCGGTGCAGAGAGCCTGCCCCAAATGAACAATCTTATGGCGTCGGCGTTCATCTGATTAGTCCTGTCTTTGCTTATGATGGTGCATTGTCATCAGCTGTTGATGAAAGAGGGCTAAGGCACATGCTACTGTGCCGTGTGATATTGGGGAAGATGGAAACGGTGGCTCCAGGTTCGAAGCAATATCATCCCAGTTCCAAGGAGATGGACACTGGCGTGGACAATCTTCAGTTTCCTAGAAGATATGTTGTGTGGAGTGCTTACATGAACTCTCACATTTTTCCTGTTTATGTGGTCAGCTTCAAGGCTCCTAGCCCAAATGTTGTCTCAGGCATTCAACCAAGTATTCAACCAAGGCAGGCGAATACTTCAAAACCCACATCACCATGGGTGACTTTCCCTGCTCTGATGTTCACGCTTGCGAAGTTCTTGCCTCCTCCTAAAATGCTATTGATTGTCAAATCTCACAACGAATTCAGAGCAAAGAGGATTTCGCGTCCACAGCTGATACGGAAAGTGAGGCAGATAGTCGGTGACAATTTGTTGATCCAAGTGATTAAAGCTTTCAGAAGCAAGAGCCTCCATCCGGCCAGTGCCAAGAGAACTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

338

Amino Acids

37.42

Weight (kDa)

9.04

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23550 AT1G70440 AT1G70440
fragaria_vesca FvH4_4g34350
malus_domestica MD13G1092800.v1.1 MD16G1093700.v1.1
prunus_persica Prupe.1G252800_v2.0.a1
pyrus_communis pycom13g08070 pycom13g08080 pycom16g07970
rosa_chinensis RchiOBHm_Chr4g0443761
rosa_laevigata RLG00000005892
rosa_multiflora Rmu_co8242545.1_g000001 Rmu_sc0042927.1_g000001
rosa_roxburghii Rroxscaffold_5G00384330
rosa_rugosa Rorug04G0347100
rosa_samantha Rh4AG407300 Rh4BG418200 Rh4CG432500 Rh4DG413500
rosa_wichuraiana Rw4G034980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 898
AciI CCGC 3 cut(s) 84, 99, 308
AclWI GGATC 4 cut(s) 117, 136, 370, 943
AcoI YGGCCR 3 cut(s) 6, 234, 990
AcsI RAATTY 3 cut(s) 60, 160, 875
AcuI CTGAAG 1 cut(s) 614
AcyI GRCGYC 1 cut(s) 444
AfiI CCNNNNNNNGG 2 cut(s) 151, 988
AgsI TTSAA 6 cut(s) 26, 292, 706, 740, 752, 774
AjiI CACGTC 1 cut(s) 186
AjnI CCWGG 1 cut(s) 571
AleI CACNNNNGTG 1 cut(s) 617
AluBI AGCT 6 cut(s) 255, 376, 500, 702, 907, 965
AluI AGCT 6 cut(s) 255, 376, 500, 702, 907, 965
Alw21I GWGCWC 1 cut(s) 257
Alw26I GTCTC 3 cut(s) 40, 213, 733
AlwI GGATC 4 cut(s) 117, 136, 370, 943
AoxI GGCC 3 cut(s) 6, 234, 990
ApoI RAATTY 3 cut(s) 60, 160, 875
AspLEI GCGC 1 cut(s) 169
AsuHPI GGTGA 3 cut(s) 777, 805, 947
AsuII TTCGAA 1 cut(s) 578
BalI TGGCCA 1 cut(s) 236
BanII GRGCYC 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 257
BccI CCATC 4 cut(s) 476, 550, 601, 993
BceAI ACGGC 1 cut(s) 522
BcgI CGANNNNNNTGC 4 cut(s) 190, 224, 814, 848
BciT130I CCWGG 1 cut(s) 573
BcoDI GTCTC 3 cut(s) 40, 213, 733
BfaI CTAG 2 cut(s) 639, 714
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 573
BmgBI CACGTC 1 cut(s) 186
BmiI GGNNCC 2 cut(s) 570, 711
BmrFI CCNGG 1 cut(s) 573
BmrI ACTGGG 1 cut(s) 588
BmuI ACTGGG 1 cut(s) 588
BpiI GAAGAC 1 cut(s) 33
BpmI CTGGAG 2 cut(s) 234, 555
Bpu10I CCTNAGC 1 cut(s) 518
Bpu14I TTCGAA 1 cut(s) 578
BsaHI GRCGYC 1 cut(s) 444
BsaJI CCNNGG 3 cut(s) 600, 755, 788
BsaWI WCCGGW 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 553, 583
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 988
Bse1I ACTGG 3 cut(s) 594, 619, 993
BseBI CCWGG 1 cut(s) 573
BseDI CCNNGG 3 cut(s) 600, 755, 788
BseGI GGATG 3 cut(s) 144, 589, 985
BseLI CCNNNNNNNGG 2 cut(s) 151, 988
BseMII CTCAG 2 cut(s) 329, 744
BseNI ACTGG 3 cut(s) 594, 619, 993
BseRI GAGGAG 2 cut(s) 231, 828
BsgI GTGCAG 1 cut(s) 430
Bsh1236I CGCG 1 cut(s) 898
BshFI GGCC 3 cut(s) 8, 236, 992
BsiHKAI GWGCWC 1 cut(s) 257
BsiSI CCGG 2 cut(s) 145, 989
BslI CCNNNNNNNGG 2 cut(s) 151, 988
BsmAI GTCTC 3 cut(s) 40, 213, 733
BsmI GAATGC 2 cut(s) 337, 735
BsnI GGCC 3 cut(s) 8, 236, 992
Bsp119I TTCGAA 1 cut(s) 578
Bsp1286I GDGCHC 1 cut(s) 257
Bsp143I GATC 4 cut(s) 109, 141, 362, 948
Bsp19I CCATGG 1 cut(s) 788
BspACI CCGC 3 cut(s) 84, 99, 308
BspANI GGCC 3 cut(s) 8, 236, 992
BspCNI CTCAG 2 cut(s) 328, 743
BspFNI CGCG 1 cut(s) 898
BspLI GGNNCC 2 cut(s) 570, 711
BspPI GGATC 4 cut(s) 117, 136, 370, 943
BspT104I TTCGAA 1 cut(s) 578
BsrI ACTGG 3 cut(s) 594, 619, 993
BssECI CCNNGG 3 cut(s) 600, 755, 788
BssMI GATC 4 cut(s) 109, 141, 362, 948
BssNI GRCGYC 1 cut(s) 444
BssT1I CCWWGG 3 cut(s) 600, 755, 788
Bst2UI CCWGG 1 cut(s) 573
Bst4CI ACNGT 4 cut(s) 46, 534, 565, 1009
Bst6I CTCTTC 1 cut(s) 150
BstACI GRCGYC 1 cut(s) 444
BstBI TTCGAA 1 cut(s) 578
BstC8I GCNNGC 3 cut(s) 420, 762, 822
BstDEI CTNAG 4 cut(s) 303, 315, 518, 730
BstDSI CCRYGG 1 cut(s) 788
BstF5I GGATG 3 cut(s) 144, 589, 985
BstFNI CGCG 1 cut(s) 898
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 4 cut(s) 112, 144, 365, 951
BstMAI GTCTC 3 cut(s) 40, 213, 733
BstMBI GATC 4 cut(s) 109, 141, 362, 948
BstMWI GCNNNNNNNGC 1 cut(s) 904
BstNI CCWGG 1 cut(s) 573
BstNSI RCATGY 1 cut(s) 529
BstSCI CCNGG 1 cut(s) 571
BstUI CGCG 1 cut(s) 898
BstV2I GAAGAC 1 cut(s) 33
BstXI CCANNNNNNTGG 2 cut(s) 232, 607
BsuRI GGCC 3 cut(s) 8, 236, 992
BtgI CCRYGG 1 cut(s) 788
BtrI CACGTC 1 cut(s) 186
BtsCI GGATG 3 cut(s) 144, 589, 985
BtsIMutI CAGTG 2 cut(s) 612, 1000
Cac8I GCNNGC 3 cut(s) 420, 762, 822
CfoI GCGC 1 cut(s) 169
CseI GACGC 2 cut(s) 433, 887
CviAII CATG 6 cut(s) 170, 202, 395, 526, 667, 789
DdeI CTNAG 4 cut(s) 303, 315, 518, 730
DpnI GATC 4 cut(s) 111, 143, 364, 950
DpnII GATC 4 cut(s) 109, 141, 362, 948
EaeI YGGCCR 3 cut(s) 6, 234, 990
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Ecl136II GAGCTC 1 cut(s) 255
Eco130I CCWWGG 3 cut(s) 600, 755, 788
Eco24I GRGCYC 1 cut(s) 257
Eco53kI GAGCTC 1 cut(s) 255
Eco57I CTGAAG 1 cut(s) 614
EcoICRI GAGCTC 1 cut(s) 255
EcoRI GAATTC 2 cut(s) 160, 875
EcoRII CCWGG 1 cut(s) 571
EcoT14I CCWWGG 3 cut(s) 600, 755, 788
EcoT38I GRGCYC 1 cut(s) 257
ErhI CCWWGG 3 cut(s) 600, 755, 788
FaeI CATG 6 cut(s) 173, 205, 398, 529, 670, 792
FalI AAGNNNNNCTT 4 cut(s) 173, 205, 360, 392
FatI CATG 6 cut(s) 169, 201, 394, 525, 666, 788
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 3 cut(s) 151, 576, 972
FriOI GRGCYC 1 cut(s) 257
Fsp4HI GCNGC 1 cut(s) 85
FspBI CTAG 2 cut(s) 639, 714
GlaI GCGC 1 cut(s) 168
GluI GCNGC 1 cut(s) 85
GsuI CTGGAG 2 cut(s) 234, 555
HaeIII GGCC 3 cut(s) 8, 236, 992
HapII CCGG 2 cut(s) 145, 989
HgaI GACGC 2 cut(s) 433, 887
HhaI GCGC 1 cut(s) 169
Hin1I GRCGYC 1 cut(s) 444
Hin1II CATG 6 cut(s) 173, 205, 398, 529, 670, 792
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HindIII AAGCTT 1 cut(s) 963
HinfI GANTC 4 cut(s) 74, 89, 284, 399
HpaII CCGG 2 cut(s) 145, 989
HphI GGTGA 3 cut(s) 777, 805, 947
Hpy166II GTNNAC 3 cut(s) 622, 816, 902
Hpy188I TCNGA 9 cut(s) 79, 109, 132, 259, 318, 459, 810, 881, 971
Hpy188III TCNNGA 2 cut(s) 181, 292
Hpy8I GTNNAC 3 cut(s) 622, 816, 902
Hpy99I CGWCG 1 cut(s) 449
HpyCH4III ACNGT 4 cut(s) 46, 534, 565, 1009
HpyCH4IV ACGT 2 cut(s) 185, 339
HpyCH4V TGCA 2 cut(s) 411, 488
HpyF10VI GCNNNNNNNGC 1 cut(s) 904
HpyF3I CTNAG 4 cut(s) 303, 315, 518, 730
HpySE526I ACGT 2 cut(s) 185, 339
Hsp92I GRCGYC 1 cut(s) 444
Hsp92II CATG 6 cut(s) 173, 205, 398, 529, 670, 792
HspAI GCGC 1 cut(s) 167
Kzo9I GATC 4 cut(s) 109, 141, 362, 948
LmnI GCTCC 2 cut(s) 574, 715
MaeI CTAG 2 cut(s) 639, 714
MaeII ACGT 2 cut(s) 185, 339
MaeIII GTNAC 3 cut(s) 262, 793, 935
MalI GATC 4 cut(s) 111, 143, 364, 950
MboI GATC 4 cut(s) 109, 141, 362, 948
MboII GAAGA 5 cut(s) 38, 167, 565, 620, 654
MhlI GDGCHC 1 cut(s) 257
MlsI TGGCCA 1 cut(s) 236
MluCI AATT 5 cut(s) 60, 94, 160, 875, 940
MluNI TGGCCA 1 cut(s) 236
MlyI GAGTC 2 cut(s) 83, 293
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 9 cut(s) 145, 209, 270, 506, 846, 849, 882, 915, 992
Mox20I TGGCCA 1 cut(s) 236
MscI TGGCCA 1 cut(s) 236
MseI TTAA 1 cut(s) 960
MslI CAYNNNNRTG 3 cut(s) 246, 617, 787
Msp20I TGGCCA 1 cut(s) 236
MspA1I CMGCKG 3 cut(s) 101, 500, 907
MspI CCGG 2 cut(s) 145, 989
MspR9I CCNGG 1 cut(s) 573
Mva1269I GAATGC 2 cut(s) 337, 735
MvaI CCWGG 1 cut(s) 573
MvnI CGCG 1 cut(s) 898
MwoI GCNNNNNNNGC 1 cut(s) 904
NcoI CCATGG 1 cut(s) 788
NdeII GATC 4 cut(s) 109, 141, 362, 948
NlaIII CATG 6 cut(s) 173, 205, 398, 529, 670, 792
NlaIV GGNNCC 2 cut(s) 570, 711
NmuCI GTSAC 3 cut(s) 262, 793, 935
NspI RCATGY 1 cut(s) 529
NspV TTCGAA 1 cut(s) 578
OliI CACNNNNGTG 1 cut(s) 617
PctI GAATGC 2 cut(s) 337, 735
PfeI GAWTC 2 cut(s) 89, 399
PflFI GACNNNGTC 1 cut(s) 32
PkrI GCNGC 1 cut(s) 86
PleI GAGTC 2 cut(s) 82, 292
PpsI GAGTC 2 cut(s) 82, 292
Psp124BI GAGCTC 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 571
PspGI CCWGG 1 cut(s) 571
PspN4I GGNNCC 2 cut(s) 570, 711
PsyI GACNNNGTC 1 cut(s) 32
PvuII CAGCTG 2 cut(s) 500, 907
RseI CAYNNNNRTG 3 cut(s) 246, 617, 787
SacI GAGCTC 1 cut(s) 257
SaqAI TTAA 1 cut(s) 960
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 4 cut(s) 109, 141, 362, 948
SchI GAGTC 2 cut(s) 83, 293
ScrFI CCNGG 1 cut(s) 573
SduI GDGCHC 1 cut(s) 257
SfuI TTCGAA 1 cut(s) 578
SmiMI CAYNNNNRTG 3 cut(s) 246, 617, 787
Sse9I AATT 5 cut(s) 60, 94, 160, 875, 940
SsiI CCGC 3 cut(s) 84, 99, 308
SspMI CTAG 2 cut(s) 639, 714
SstI GAGCTC 1 cut(s) 257
StyD4I CCNGG 1 cut(s) 571
StyI CCWWGG 3 cut(s) 600, 755, 788
TaaI ACNGT 4 cut(s) 46, 534, 565, 1009
TaiI ACGT 2 cut(s) 188, 342
TaqI TCGA 1 cut(s) 578
TasI AATT 5 cut(s) 60, 94, 160, 875, 940
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 2 cut(s) 89, 399
Tru1I TTAA 1 cut(s) 960
Tru9I TTAA 1 cut(s) 960
TscAI CASTG 2 cut(s) 619, 1000
TseFI GTSAC 3 cut(s) 262, 793, 935
Tsp45I GTSAC 3 cut(s) 262, 793, 935
TspDTI ATGAA 5 cut(s) 383, 443, 444, 522, 683
TspGWI ACGGA 1 cut(s) 928
TspRI CASTG 2 cut(s) 619, 1000
Tth111I GACNNNGTC 1 cut(s) 32
XapI RAATTY 3 cut(s) 60, 160, 875
XceI RCATGY 1 cut(s) 529
XspI CTAG 2 cut(s) 639, 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.