Rroxscaffold_5G00384330

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0010041
Physical Location & Seq
Forward (+)
63757974 .. 63760342
2369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00384330.1

Sequence Viewer

Length: 981 bp
ATGGCACAGATCGAACAGATTAGCGAGTACCAAGCCTCCATGATTGTTGATGATAACGAAAAAAGCCACGATTCCGGGTCGGACTGCTCCCAATCGAGCTCCTGTTCGGTTGTTTCGGATCGGTTCGAGGTTTTCACTCGGATGAGATTGCTTAGGTTGGAAGAAGATAGTATAGAGCATGAGTTTACCAAGAAGATGTTCGCCGTGGGTATGGAGTCTAACGGAGTAGACGCCAAGGTTATGGCGGTTCACAAGAATCTGCATTCTGGGTGGACCAGGCGAGCCAGGTGCGAAACGTTTCTGATCTTTCAGAAGGCGGTGGCTCAGAAATGCGGCGGAAACGCCAATATCGGATACGGCTGGTACGGCGGGTCCAGGGATGAGATTTGTGATATCCTGTTGCATGGGTTTAGTGGGTGCAGAGCGGCCAGGTCTCATGGGGTTGGAATTCAATTGTTTGCTAATAACTATTCTTTTGATGGTGCAATATCATCAGATGCTGATGAGAATGGGCTGAGGCACATTTTGCTGTGCAGAGTCATATTGGGGAAGAGAGAATTGGTGCCTGCTGGTTCGAAGCAAGTTAATCCCAGTTCCAAGGAGTTTGATTCTGGTGTGGATAGTCTTACGAATCCGAAGAGACTCATCACATGGAGCTCTTTCATGAACTCTCATATTATGCCTCTTTTTGTTGTGAGCTTCAAGGCTCCTGCTAACTTGAAGGATATTCCAAGGAGCATTCAGGCGAGTGCTGCTGCTGTAAGACCACCACCTAAGTCGGCTTGGGTGAATCTCACTGCTATGATGAACGCGCTCGCTAAGGTCTTGCCTCCTCCTAGAATGGTTCTGCTTTCCAAATCCGCAGACGATTTCAGGGCGAAGAAGATTACTAGACCTCAGCTGATTAGAAGAGTGAGAACTCTAGCAGGTGACAAATTGCTGGTTTCGGTGGTCAAAAACTTTAACAAGGAGCGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

326

Amino Acids

36.12

Weight (kDa)

9.31

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 258 - 321 1.1e-17 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23550 AT1G70440 AT1G70440
fragaria_vesca FvH4_4g34350
malus_domestica MD13G1092800.v1.1 MD16G1093700.v1.1
prunus_persica Prupe.1G252800_v2.0.a1
pyrus_communis pycom13g08070 pycom13g08080 pycom16g07970
rosa_chinensis RchiOBHm_Chr4g0443761
rosa_laevigata RLG00000005892
rosa_multiflora Rmu_co8242545.1_g000001 Rmu_sc0042927.1_g000001
rosa_roxburghii Rroxscaffold_5G00384330
rosa_rugosa Rorug04G0347100
rosa_samantha Rh4AG407300 Rh4BG418200 Rh4CG432500 Rh4DG413500
rosa_wichuraiana Rw4G034980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 917
Acc36I ACCTGC 1 cut(s) 917
AccB1I GGYRCC 1 cut(s) 562
AccBSI CCGCTC 2 cut(s) 425, 973
AccI GTMKAC 1 cut(s) 228
AccII CGCG 1 cut(s) 812
AciI CCGC 8 cut(s) 245, 317, 333, 336, 369, 425, 861, 973
AclI AACGTT 1 cut(s) 296
AclWI GGATC 1 cut(s) 126
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 1 cut(s) 447
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 2 cut(s) 29, 365
AgsI TTSAA 3 cut(s) 452, 703, 721
AjnI CCWGG 4 cut(s) 275, 284, 374, 428
AjuI GAANNNNNNNTTGG 4 cut(s) 182, 214, 542, 574
AluBI AGCT 4 cut(s) 99, 657, 699, 901
AluI AGCT 4 cut(s) 99, 657, 699, 901
Alw21I GWGCWC 2 cut(s) 101, 659
Alw26I GTCTC 2 cut(s) 438, 634
AlwI GGATC 1 cut(s) 126
AlwNI CAGNNNCTG 1 cut(s) 500
AoxI GGCC 1 cut(s) 426
ApeKI GCWGC 2 cut(s) 752, 755
ApoI RAATTY 1 cut(s) 447
Asp700I GAANNNNTTC 2 cut(s) 197, 297
AspLEI GCGC 1 cut(s) 814
AspS9I GGNCC 2 cut(s) 273, 372
AsuC2I CCSGG 1 cut(s) 76
AsuHPI GGTGA 2 cut(s) 799, 941
AsuII TTCGAA 1 cut(s) 575
AvaII GGWCC 2 cut(s) 273, 372
BanI GGYRCC 1 cut(s) 562
BanII GRGCYC 2 cut(s) 101, 659
Bbv12I GWGCWC 2 cut(s) 101, 659
BbvCI CCTCAGC 2 cut(s) 515, 897
BbvI GCAGC 2 cut(s) 739, 742
BccI CCATC 1 cut(s) 473
BceAI ACGGC 3 cut(s) 188, 373, 382
BcgI CGANNNNNNTGC 2 cut(s) 270, 304
BciT130I CCWGG 4 cut(s) 277, 286, 376, 430
BciVI GTATCC 1 cut(s) 347
BcnI CCSGG 1 cut(s) 76
BcoDI GTCTC 2 cut(s) 438, 634
BfaI CTAG 3 cut(s) 837, 891, 923
BfuAI ACCTGC 1 cut(s) 917
BfuI GTATCC 1 cut(s) 347
BisI GCNGC 4 cut(s) 334, 426, 753, 756
BlsI GCNGC 4 cut(s) 335, 427, 754, 757
Bme1390I CCNGG 5 cut(s) 76, 277, 286, 376, 430
Bme18I GGWCC 2 cut(s) 273, 372
BmgT120I GGNCC 2 cut(s) 273, 372
BmiI GGNNCC 3 cut(s) 373, 564, 708
BmrFI CCNGG 5 cut(s) 76, 277, 286, 376, 430
BmrI ACTGGG 1 cut(s) 585
BmsI GCATC 1 cut(s) 487
BmuI ACTGGG 1 cut(s) 585
Bpu10I CCTNAGC 4 cut(s) 152, 515, 819, 897
Bpu14I TTCGAA 1 cut(s) 575
BpuMI CCSGG 1 cut(s) 76
BsaHI GRCGYC 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 438
BsaJI CCNNGG 5 cut(s) 204, 234, 375, 597, 731
BsaXI ACNNNNNCTCC 3 cut(s) 20, 50, 962
Bse1I ACTGG 1 cut(s) 591
BseBI CCWGG 4 cut(s) 277, 286, 376, 430
BseDI CCNNGG 5 cut(s) 204, 234, 375, 597, 731
BseGI GGATG 2 cut(s) 147, 385
BseMII CTCAG 3 cut(s) 338, 506, 911
BseNI ACTGG 1 cut(s) 591
BseRI GAGGAG 1 cut(s) 822
BseXI GCAGC 2 cut(s) 739, 742
BsgI GTGCAG 2 cut(s) 439, 553
Bsh1236I CGCG 1 cut(s) 812
BshFI GGCC 1 cut(s) 428
BshNI GGYRCC 1 cut(s) 562
BsiHKAI GWGCWC 2 cut(s) 101, 659
BsiSI CCGG 1 cut(s) 75
BsmAI GTCTC 2 cut(s) 438, 634
BsmI GAATGC 2 cut(s) 262, 738
BsnI GGCC 1 cut(s) 428
Bso31I GGTCTC 1 cut(s) 438
Bsp119I TTCGAA 1 cut(s) 575
Bsp1286I GDGCHC 2 cut(s) 101, 659
Bsp143I GATC 3 cut(s) 9, 118, 303
BspACI CCGC 8 cut(s) 245, 317, 333, 336, 369, 425, 861, 973
BspANI GGCC 1 cut(s) 428
BspCNI CTCAG 3 cut(s) 337, 507, 910
BspFNI CGCG 1 cut(s) 812
BspHI TCATGA 1 cut(s) 663
BspLI GGNNCC 3 cut(s) 373, 564, 708
BspMI ACCTGC 1 cut(s) 917
BspPI GGATC 1 cut(s) 126
BspT104I TTCGAA 1 cut(s) 575
BspT107I GGYRCC 1 cut(s) 562
BspTNI GGTCTC 1 cut(s) 438
BsrBI CCGCTC 2 cut(s) 425, 973
BsrI ACTGG 1 cut(s) 591
BssECI CCNNGG 5 cut(s) 204, 234, 375, 597, 731
BssMI GATC 3 cut(s) 9, 118, 303
BssNI GRCGYC 1 cut(s) 231
BssT1I CCWWGG 3 cut(s) 234, 597, 731
Bst2UI CCWGG 4 cut(s) 277, 286, 376, 430
Bst6I CTCTTC 3 cut(s) 545, 632, 904
BstACI GRCGYC 1 cut(s) 231
BstAPI GCANNNNNTGC 1 cut(s) 526
BstBI TTCGAA 1 cut(s) 575
BstC8I GCNNGC 3 cut(s) 282, 567, 816
BstDEI CTNAG 6 cut(s) 152, 324, 515, 774, 819, 897
BstDSI CCRYGG 1 cut(s) 204
BstF5I GGATG 2 cut(s) 147, 385
BstFNI CGCG 1 cut(s) 812
BstHHI GCGC 1 cut(s) 814
BstKTI GATC 3 cut(s) 12, 121, 306
BstMAI GTCTC 2 cut(s) 438, 634
BstMBI GATC 3 cut(s) 9, 118, 303
BstMWI GCNNNNNNNGC 3 cut(s) 366, 526, 752
BstNI CCWGG 4 cut(s) 277, 286, 376, 430
BstSCI CCNGG 5 cut(s) 74, 275, 284, 374, 428
BstUI CGCG 1 cut(s) 812
BstV1I GCAGC 2 cut(s) 739, 742
BstXI CCANNNNNNTGG 1 cut(s) 241
BsuI GTATCC 1 cut(s) 347
BsuRI GGCC 1 cut(s) 428
BtgI CCRYGG 1 cut(s) 204
BtsCI GGATG 2 cut(s) 147, 385
BtsI GCAGTG 1 cut(s) 795
BtsIMutI CAGTG 1 cut(s) 795
BveI ACCTGC 1 cut(s) 917
Cac8I GCNNGC 3 cut(s) 282, 567, 816
CaiI CAGNNNCTG 1 cut(s) 500
CciI TCATGA 1 cut(s) 663
CfoI GCGC 1 cut(s) 814
Cfr13I GGNCC 2 cut(s) 273, 372
CseI GACGC 1 cut(s) 239
Csp6I GTAC 2 cut(s) 28, 364
CviAII CATG 6 cut(s) 40, 179, 404, 437, 651, 664
CviQI GTAC 2 cut(s) 28, 364
DdeI CTNAG 6 cut(s) 152, 324, 515, 774, 819, 897
DpnI GATC 3 cut(s) 11, 120, 305
DpnII GATC 3 cut(s) 9, 118, 303
EaeI YGGCCR 1 cut(s) 426
Eam1104I CTCTTC 3 cut(s) 545, 632, 904
EarI CTCTTC 3 cut(s) 545, 632, 904
EciI GGCGGA 1 cut(s) 351
Ecl136II GAGCTC 2 cut(s) 99, 657
Eco130I CCWWGG 3 cut(s) 234, 597, 731
Eco24I GRGCYC 2 cut(s) 101, 659
Eco31I GGTCTC 1 cut(s) 438
Eco32I GATATC 1 cut(s) 394
Eco47I GGWCC 2 cut(s) 273, 372
Eco53kI GAGCTC 2 cut(s) 99, 657
EcoICRI GAGCTC 2 cut(s) 99, 657
EcoRI GAATTC 1 cut(s) 447
EcoRII CCWGG 4 cut(s) 275, 284, 374, 428
EcoRV GATATC 1 cut(s) 394
EcoT14I CCWWGG 3 cut(s) 234, 597, 731
EcoT38I GRGCYC 2 cut(s) 101, 659
ErhI CCWWGG 3 cut(s) 234, 597, 731
FaeI CATG 6 cut(s) 43, 182, 407, 440, 654, 667
FatI CATG 6 cut(s) 39, 178, 403, 436, 650, 663
FauI CCCGC 2 cut(s) 362, 966
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 4 cut(s) 334, 426, 753, 756
FokI GGATG 2 cut(s) 154, 392
FriOI GRGCYC 2 cut(s) 101, 659
Fsp4HI GCNGC 4 cut(s) 334, 426, 753, 756
FspBI CTAG 3 cut(s) 837, 891, 923
GlaI GCGC 1 cut(s) 813
GluI GCNGC 4 cut(s) 334, 426, 753, 756
HaeIII GGCC 1 cut(s) 428
HapII CCGG 1 cut(s) 75
HgaI GACGC 1 cut(s) 239
HhaI GCGC 1 cut(s) 814
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 6 cut(s) 43, 182, 407, 440, 654, 667
Hin6I GCGC 1 cut(s) 812
HinP1I GCGC 1 cut(s) 812
HinfI GANTC 8 cut(s) 71, 215, 256, 537, 608, 631, 642, 790
HpaII CCGG 1 cut(s) 75
HphI GGTGA 2 cut(s) 799, 941
Hpy166II GTNNAC 4 cut(s) 186, 229, 250, 273
Hpy188I TCNGA 9 cut(s) 82, 118, 141, 303, 312, 327, 353, 496, 636
Hpy188III TCNNGA 1 cut(s) 664
Hpy8I GTNNAC 4 cut(s) 186, 229, 250, 273
HpyAV CCTTC 2 cut(s) 307, 715
HpyCH4IV ACGT 1 cut(s) 296
HpyCH4V TGCA 5 cut(s) 262, 403, 420, 485, 534
HpyF10VI GCNNNNNNNGC 3 cut(s) 366, 526, 752
HpyF3I CTNAG 6 cut(s) 152, 324, 515, 774, 819, 897
HpySE526I ACGT 1 cut(s) 296
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 6 cut(s) 43, 182, 407, 440, 654, 667
HspAI GCGC 1 cut(s) 812
Kzo9I GATC 3 cut(s) 9, 118, 303
LmnI GCTCC 6 cut(s) 92, 104, 654, 712, 735, 970
Lsp1109I GCAGC 2 cut(s) 739, 742
LweI GCATC 1 cut(s) 487
MaeI CTAG 3 cut(s) 837, 891, 923
MaeII ACGT 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 929
MalI GATC 3 cut(s) 11, 120, 305
MbiI CCGCTC 2 cut(s) 425, 973
MboI GATC 3 cut(s) 9, 118, 303
MboII GAAGA 8 cut(s) 173, 176, 205, 562, 649, 892, 895, 921
MfeI CAATTG 1 cut(s) 452
MhlI GDGCHC 2 cut(s) 101, 659
MluCI AATT 4 cut(s) 447, 452, 557, 935
MlyI GAGTC 3 cut(s) 224, 546, 636
MmeI TCCRAC 3 cut(s) 60, 138, 424
MnlI CCTC 7 cut(s) 46, 121, 510, 693, 840, 843, 906
MroXI GAANNNNTTC 2 cut(s) 197, 297
MseI TTAA 2 cut(s) 585, 963
MslI CAYNNNNRTG 2 cut(s) 140, 800
MspA1I CMGCKG 1 cut(s) 901
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 5 cut(s) 76, 277, 286, 376, 430
MunI CAATTG 1 cut(s) 452
Mva1269I GAATGC 2 cut(s) 262, 738
MvaI CCWGG 4 cut(s) 277, 286, 376, 430
MvnI CGCG 1 cut(s) 812
MwoI GCNNNNNNNGC 3 cut(s) 366, 526, 752
NciI CCSGG 1 cut(s) 76
NdeII GATC 3 cut(s) 9, 118, 303
NlaIII CATG 6 cut(s) 43, 182, 407, 440, 654, 667
NlaIV GGNNCC 3 cut(s) 373, 564, 708
NmuCI GTSAC 1 cut(s) 929
NspV TTCGAA 1 cut(s) 575
PagI TCATGA 1 cut(s) 663
PaqCI CACCTGC 1 cut(s) 917
PctI GAATGC 2 cut(s) 262, 738
PdmI GAANNNNTTC 2 cut(s) 197, 297
PfeI GAWTC 5 cut(s) 71, 256, 608, 631, 790
PkrI GCNGC 4 cut(s) 335, 427, 754, 757
PleI GAGTC 3 cut(s) 223, 545, 636
PpsI GAGTC 3 cut(s) 223, 545, 636
Psp124BI GAGCTC 2 cut(s) 101, 659
Psp1406I AACGTT 1 cut(s) 296
Psp6I CCWGG 4 cut(s) 275, 284, 374, 428
PspGI CCWGG 4 cut(s) 275, 284, 374, 428
PspN4I GGNNCC 3 cut(s) 373, 564, 708
PspPI GGNCC 2 cut(s) 273, 372
PstNI CAGNNNCTG 1 cut(s) 500
PvuII CAGCTG 1 cut(s) 901
RsaI GTAC 2 cut(s) 29, 365
RsaNI GTAC 2 cut(s) 28, 364
RseI CAYNNNNRTG 2 cut(s) 140, 800
SacI GAGCTC 2 cut(s) 101, 659
SaqAI TTAA 2 cut(s) 585, 963
SatI GCNGC 4 cut(s) 334, 426, 753, 756
Sau3AI GATC 3 cut(s) 9, 118, 303
Sau96I GGNCC 2 cut(s) 273, 372
SchI GAGTC 3 cut(s) 224, 546, 636
ScrFI CCNGG 5 cut(s) 76, 277, 286, 376, 430
SduI GDGCHC 2 cut(s) 101, 659
SfaNI GCATC 1 cut(s) 487
SfuI TTCGAA 1 cut(s) 575
SinI GGWCC 2 cut(s) 273, 372
SmiMI CAYNNNNRTG 2 cut(s) 140, 800
Sse9I AATT 4 cut(s) 447, 452, 557, 935
SsiI CCGC 8 cut(s) 245, 317, 333, 336, 369, 425, 861, 973
SspMI CTAG 3 cut(s) 837, 891, 923
SstI GAGCTC 2 cut(s) 101, 659
StyD4I CCNGG 5 cut(s) 74, 275, 284, 374, 428
StyI CCWWGG 3 cut(s) 234, 597, 731
TaiI ACGT 1 cut(s) 299
TaqI TCGA 4 cut(s) 12, 95, 126, 575
TasI AATT 4 cut(s) 447, 452, 557, 935
TauI GCSGC 2 cut(s) 336, 428
TfiI GAWTC 5 cut(s) 71, 256, 608, 631, 790
Tru1I TTAA 2 cut(s) 585, 963
Tru9I TTAA 2 cut(s) 585, 963
TscAI CASTG 1 cut(s) 802
TseFI GTSAC 1 cut(s) 929
TseI GCWGC 2 cut(s) 752, 755
Tsp45I GTSAC 1 cut(s) 929
TspDTI ATGAA 3 cut(s) 652, 680, 821
TspGWI ACGGA 1 cut(s) 237
TspRI CASTG 1 cut(s) 802
VpaK11BI GGWCC 2 cut(s) 273, 372
XapI RAATTY 1 cut(s) 447
XmiI GTMKAC 1 cut(s) 228
XmnI GAANNNNTTC 2 cut(s) 197, 297
XspI CTAG 3 cut(s) 837, 891, 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.