pycom16g07970

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0010041
Physical Location & Seq
Reverse (-)
5276041 .. 5277379
1339 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g07970.3

Sequence Viewer

Length: 987 bp
ATGTCGACCGATGAGTTTGAATTCGAAGACCAAATCTCGATGACTATTGATAATGGCGAAGAAATTCTGGATTCTGGGTCTGATGGGGGCGATTCGAACGACGCAGTTTCGGGTCGGTTTGGGGTTTTCACCCGGAGCGGGATGGTCCGGGTGGACGACGAGAGTTTCGAACACGAGATCATCAGGAAGAGCTTTGTTTTGGGCATGGGTTTGGCCGGGAGGGACACGAATATTGTGGCGGTGCACAAGAACTTGAGCTCCGATCCTACGAGGAGGGCGAGGTTCGAATCGTTCAAGATTTTCATTCAGGCGGTGGCTCGGAAATGCGGCGGGAACGCCAACGTTAAGTACGGCTGGTACGGCGGATCGAAGGAGGAGCTTTGTGATGTTTTGATCCATGGCTTCAGTCGGTCCAGGGAGCCTGCTCCAAATGAAGTGTCGTACGGTGTCGGTGTTCATATGATTCCTGCCGAATTTACATGTGATGGGGCATTGTCGTCGGTTGTTGATGAAAGTGGGCTGAAGCACATCTTGCTGTGCCGTGTGATATTGGGGAAGGCGGAAATGGTCGTGCCGGGGTCGAAGCAATCACAACCAAGCTCCAAGGAGGTGGACACTGGAGTGGACAATTTGGTCAATCCAAGAAGATATGTTGTTTGGAGTGCTATCATGAACTCTCACATATACCCTTGCTATTTGATCAGCTTCAAAGCTCCTAGTACTCTCCCAAATGTTATTTCAGGTGTTCCAACAATGCAGCGGAGTGCTTTGAGACCACCCCCCACGTCTCCATGGATGAGCTTCCCTGCTCTGCTGTCCATTCTCTCAAAGTTCTTGCCTCCGACGAAAATGCAGTTGCTCGTTGTTTGTCACAACGAATTCAGAGCGAACAAGATAACGCGCCCGCAGCTGATACAGAGAGTGAGGCAGATTGCCGGTGACAGGCTGTTGATTGGAGTGATCAAATCTGTCAAGAGGCATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

329

Amino Acids

36.2

Weight (kDa)

8.18

Isoelectric Point (pI)

52.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23550 AT1G70440 AT1G70440
fragaria_vesca FvH4_4g34350
malus_domestica MD13G1092800.v1.1 MD16G1093700.v1.1
prunus_persica Prupe.1G252800_v2.0.a1
pyrus_communis pycom13g08070 pycom13g08080 pycom16g07970
rosa_chinensis RchiOBHm_Chr4g0443761
rosa_laevigata RLG00000005892
rosa_multiflora Rmu_co8242545.1_g000001 Rmu_sc0042927.1_g000001
rosa_roxburghii Rroxscaffold_5G00384330
rosa_rugosa Rorug04G0347100
rosa_samantha Rh4AG407300 Rh4BG418200 Rh4CG432500 Rh4DG413500
rosa_wichuraiana Rw4G034980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 632
AccBSI CCGCTC 1 cut(s) 138
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 901
AciI CCGC 9 cut(s) 138, 239, 311, 327, 330, 363, 560, 760, 905
AclI AACGTT 1 cut(s) 342
AclWI GGATC 3 cut(s) 257, 373, 388
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 4 cut(s) 20, 63, 473, 878
AcuI CTGAAG 2 cut(s) 388, 542
AfaI GTAC 4 cut(s) 350, 359, 443, 721
AfiI CCNNNNNNNGG 2 cut(s) 138, 942
AflIII ACRYGT 1 cut(s) 479
AgsI TTSAA 3 cut(s) 20, 295, 709
AjiI CACGTC 1 cut(s) 786
AjnI CCWGG 1 cut(s) 413
AjuI GAANNNNNNNTTGG 2 cut(s) 721, 753
AleI CACNNNNGTG 1 cut(s) 620
AloI GAACNNNNNNTCC 2 cut(s) 242, 274
AluBI AGCT 8 cut(s) 192, 258, 379, 600, 705, 713, 801, 910
AluI AGCT 8 cut(s) 192, 258, 379, 600, 705, 713, 801, 910
Alw21I GWGCWC 2 cut(s) 246, 260
Alw26I GTCTC 2 cut(s) 766, 792
Alw44I GTGCAC 1 cut(s) 242
AlwI GGATC 3 cut(s) 257, 373, 388
AoxI GGCC 1 cut(s) 213
ApaLI GTGCAC 1 cut(s) 242
ApeKI GCWGC 2 cut(s) 757, 907
ApoI RAATTY 4 cut(s) 20, 63, 473, 878
ArsI GACNNNNNNTTYG 4 cut(s) 149, 181, 422, 454
Asp700I GAANNNNTTC 1 cut(s) 63
AspLEI GCGC 1 cut(s) 903
AspS9I GGNCC 2 cut(s) 145, 411
AsuC2I CCSGG 4 cut(s) 133, 149, 217, 576
AsuHPI GGTGA 2 cut(s) 121, 950
AsuII TTCGAA 4 cut(s) 24, 95, 168, 285
AvaII GGWCC 2 cut(s) 145, 411
BaeGI GKGCMC 1 cut(s) 246
BanII GRGCYC 1 cut(s) 260
BauI CACGAG 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 2 cut(s) 246, 260
BbvI GCAGC 2 cut(s) 769, 919
BccI CCATC 3 cut(s) 77, 136, 479
BceAI ACGGC 3 cut(s) 367, 376, 525
BcgI CGANNNNNNTGC 4 cut(s) 480, 514, 832, 866
BciT130I CCWGG 1 cut(s) 415
BclI TGATCA 2 cut(s) 699, 960
BcnI CCSGG 4 cut(s) 133, 149, 217, 576
BcoDI GTCTC 2 cut(s) 766, 792
BfaI CTAG 1 cut(s) 717
BisI GCNGC 3 cut(s) 328, 758, 908
BlsI GCNGC 3 cut(s) 329, 759, 909
BmcAI AGTACT 1 cut(s) 721
Bme1390I CCNGG 5 cut(s) 133, 149, 217, 415, 576
Bme18I GGWCC 2 cut(s) 145, 411
BmgBI CACGTC 1 cut(s) 786
BmgT120I GGNCC 2 cut(s) 145, 411
BmiI GGNNCC 1 cut(s) 420
BmrFI CCNGG 5 cut(s) 133, 149, 217, 415, 576
BpiI GAAGAC 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 639
Bpu14I TTCGAA 4 cut(s) 24, 95, 168, 285
BpuEI CTTGAG 1 cut(s) 274
BpuMI CCSGG 4 cut(s) 133, 149, 217, 576
BsaI GGTCTC 1 cut(s) 766
BsaJI CCNNGG 5 cut(s) 397, 414, 575, 603, 791
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 942
Bse118I RCCGGY 1 cut(s) 935
Bse1I ACTGG 1 cut(s) 622
BseBI CCWGG 1 cut(s) 415
BseDI CCNNGG 5 cut(s) 397, 414, 575, 603, 791
BseGI GGATG 2 cut(s) 147, 801
BseLI CCNNNNNNNGG 2 cut(s) 138, 942
BseNI ACTGG 1 cut(s) 622
BseRI GAGGAG 2 cut(s) 286, 389
BseSI GKGCMC 1 cut(s) 246
BseXI GCAGC 2 cut(s) 769, 919
Bsh1236I CGCG 1 cut(s) 901
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 1 cut(s) 215
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 2 cut(s) 246, 260
BsiSI CCGG 5 cut(s) 133, 148, 216, 575, 936
BsiWI CGTACG 1 cut(s) 441
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 2 cut(s) 138, 942
BsmAI GTCTC 2 cut(s) 766, 792
BsmBI CGTCTC 1 cut(s) 792
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 1 cut(s) 215
Bso31I GGTCTC 1 cut(s) 766
Bsp119I TTCGAA 4 cut(s) 24, 95, 168, 285
Bsp1286I GDGCHC 2 cut(s) 246, 260
Bsp143I GATC 6 cut(s) 177, 262, 365, 393, 699, 960
Bsp19I CCATGG 2 cut(s) 397, 791
BspACI CCGC 9 cut(s) 138, 239, 311, 327, 330, 363, 560, 760, 905
BspANI GGCC 1 cut(s) 215
BspFNI CGCG 1 cut(s) 901
BspHI TCATGA 1 cut(s) 669
BspLI GGNNCC 1 cut(s) 420
BspPI GGATC 3 cut(s) 257, 373, 388
BspQI GCTCTTC 1 cut(s) 182
BspT104I TTCGAA 4 cut(s) 24, 95, 168, 285
BspTNI GGTCTC 1 cut(s) 766
BsrBI CCGCTC 1 cut(s) 138
BsrFI RCCGGY 1 cut(s) 935
BsrI ACTGG 1 cut(s) 622
BssAI RCCGGY 1 cut(s) 935
BssECI CCNNGG 5 cut(s) 397, 414, 575, 603, 791
BssMI GATC 6 cut(s) 177, 262, 365, 393, 699, 960
BssSI CACGAG 1 cut(s) 173
BssT1I CCWWGG 3 cut(s) 397, 603, 791
Bst2BI CACGAG 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 415
Bst4CI ACNGT 1 cut(s) 446
Bst6I CTCTTC 1 cut(s) 182
BstAPI GCANNNNNTGC 1 cut(s) 532
BstBI TTCGAA 4 cut(s) 24, 95, 168, 285
BstC8I GCNNGC 2 cut(s) 423, 905
BstDSI CCRYGG 2 cut(s) 397, 791
BstF5I GGATG 2 cut(s) 147, 801
BstFNI CGCG 1 cut(s) 901
BstHHI GCGC 1 cut(s) 903
BstKTI GATC 6 cut(s) 180, 265, 368, 396, 702, 963
BstMAI GTCTC 2 cut(s) 766, 792
BstMBI GATC 6 cut(s) 177, 262, 365, 393, 699, 960
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 3 cut(s) 360, 532, 907
BstNI CCWGG 1 cut(s) 415
BstNSI RCATGY 1 cut(s) 483
BstSCI CCNGG 5 cut(s) 131, 147, 215, 413, 574
BstSLI GKGCMC 1 cut(s) 246
BstUI CGCG 1 cut(s) 901
BstV1I GCAGC 2 cut(s) 769, 919
BstV2I GAAGAC 1 cut(s) 33
BstXI CCANNNNNNTGG 1 cut(s) 610
BsuRI GGCC 1 cut(s) 215
BtgI CCRYGG 2 cut(s) 397, 791
BtrI CACGTC 1 cut(s) 786
BtsCI GGATG 2 cut(s) 147, 801
BtsIMutI CAGTG 1 cut(s) 615
Cac8I GCNNGC 2 cut(s) 423, 905
CciI TCATGA 1 cut(s) 669
CfoI GCGC 1 cut(s) 903
Cfr10I RCCGGY 1 cut(s) 935
Cfr13I GGNCC 2 cut(s) 145, 411
CseI GACGC 1 cut(s) 110
Csp6I GTAC 4 cut(s) 349, 358, 442, 720
CviAII CATG 6 cut(s) 205, 398, 480, 670, 792, 980
CviQI GTAC 4 cut(s) 349, 358, 442, 720
DpnI GATC 6 cut(s) 179, 264, 367, 395, 701, 962
DpnII GATC 6 cut(s) 177, 262, 365, 393, 699, 960
DrdI GACNNNNNNGTC 1 cut(s) 632
DseDI GACNNNNNNGTC 1 cut(s) 632
EaeI YGGCCR 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
EciI GGCGGA 2 cut(s) 378, 575
Ecl136II GAGCTC 1 cut(s) 258
Eco130I CCWWGG 3 cut(s) 397, 603, 791
Eco24I GRGCYC 1 cut(s) 260
Eco31I GGTCTC 1 cut(s) 766
Eco47I GGWCC 2 cut(s) 145, 411
Eco53kI GAGCTC 1 cut(s) 258
Eco57I CTGAAG 2 cut(s) 388, 542
EcoICRI GAGCTC 1 cut(s) 258
EcoRI GAATTC 2 cut(s) 20, 878
EcoRII CCWGG 1 cut(s) 413
EcoT14I CCWWGG 3 cut(s) 397, 603, 791
EcoT38I GRGCYC 1 cut(s) 260
ErhI CCWWGG 3 cut(s) 397, 603, 791
Esp3I CGTCTC 1 cut(s) 792
FaeI CATG 6 cut(s) 208, 401, 483, 673, 795, 983
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FaqI GGGAC 1 cut(s) 236
FatI CATG 6 cut(s) 204, 397, 479, 669, 791, 979
FauI CCCGC 3 cut(s) 131, 323, 912
FauNDI CATATG 1 cut(s) 459
FbaI TGATCA 2 cut(s) 699, 960
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 328, 758, 908
FokI GGATG 2 cut(s) 154, 808
FriOI GRGCYC 1 cut(s) 260
Fsp4HI GCNGC 3 cut(s) 328, 758, 908
FspBI CTAG 1 cut(s) 717
GlaI GCGC 1 cut(s) 902
GluI GCNGC 3 cut(s) 328, 758, 908
GsuI CTGGAG 1 cut(s) 639
HaeIII GGCC 1 cut(s) 215
HapII CCGG 5 cut(s) 133, 148, 216, 575, 936
HgaI GACGC 1 cut(s) 110
HhaI GCGC 1 cut(s) 903
Hin1II CATG 6 cut(s) 208, 401, 483, 673, 795, 983
Hin6I GCGC 1 cut(s) 901
HinP1I GCGC 1 cut(s) 901
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 4 cut(s) 71, 92, 287, 463
HpaII CCGG 5 cut(s) 133, 148, 216, 575, 936
HphI GGTGA 2 cut(s) 121, 950
Hpy166II GTNNAC 5 cut(s) 6, 154, 244, 613, 625
Hpy188I TCNGA 5 cut(s) 82, 262, 321, 843, 884
Hpy188III TCNNGA 6 cut(s) 37, 68, 184, 295, 670, 973
Hpy8I GTNNAC 5 cut(s) 6, 154, 244, 613, 625
Hpy99I CGWCG 4 cut(s) 104, 161, 502, 847
HpyAV CCTTC 2 cut(s) 364, 550
HpyCH4III ACNGT 1 cut(s) 446
HpyCH4IV ACGT 2 cut(s) 342, 785
HpyCH4V TGCA 3 cut(s) 244, 757, 853
HpyF10VI GCNNNNNNNGC 3 cut(s) 360, 532, 907
HpySE526I ACGT 2 cut(s) 342, 785
Hsp92II CATG 6 cut(s) 208, 401, 483, 673, 795, 983
HspAI GCGC 1 cut(s) 901
Ksp22I TGATCA 2 cut(s) 699, 960
Kzo9I GATC 6 cut(s) 177, 262, 365, 393, 699, 960
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 7 cut(s) 135, 263, 376, 418, 430, 605, 718
Lsp1109I GCAGC 2 cut(s) 769, 919
MaeI CTAG 1 cut(s) 717
MaeII ACGT 2 cut(s) 342, 785
MaeIII GTNAC 2 cut(s) 869, 938
MalI GATC 6 cut(s) 179, 264, 367, 395, 701, 962
MbiI CCGCTC 1 cut(s) 138
MboI GATC 6 cut(s) 177, 262, 365, 393, 699, 960
MboII GAAGA 4 cut(s) 38, 71, 199, 657
MhlI GDGCHC 2 cut(s) 246, 260
MluCI AATT 5 cut(s) 20, 63, 473, 628, 878
MmeI TCCRAC 2 cut(s) 773, 866
MnlI CCTC 9 cut(s) 213, 264, 267, 273, 367, 601, 849, 918, 969
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 1 cut(s) 345
MslI CAYNNNNRTG 1 cut(s) 620
MspA1I CMGCKG 2 cut(s) 760, 910
MspI CCGG 5 cut(s) 133, 148, 216, 575, 936
MspR9I CCNGG 5 cut(s) 133, 149, 217, 415, 576
MvaI CCWGG 1 cut(s) 415
MvnI CGCG 1 cut(s) 901
MwoI GCNNNNNNNGC 3 cut(s) 360, 532, 907
NciI CCSGG 4 cut(s) 133, 149, 217, 576
NcoI CCATGG 2 cut(s) 397, 791
NdeI CATATG 1 cut(s) 459
NdeII GATC 6 cut(s) 177, 262, 365, 393, 699, 960
NlaIII CATG 6 cut(s) 208, 401, 483, 673, 795, 983
NlaIV GGNNCC 1 cut(s) 420
NmuCI GTSAC 2 cut(s) 869, 938
NspI RCATGY 1 cut(s) 483
NspV TTCGAA 4 cut(s) 24, 95, 168, 285
OliI CACNNNNGTG 1 cut(s) 620
PagI TCATGA 1 cut(s) 669
PciI ACATGT 1 cut(s) 479
PciSI GCTCTTC 1 cut(s) 182
PcsI WCGNNNNNNNCGW 2 cut(s) 165, 275
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 4 cut(s) 71, 92, 287, 463
Pfl23II CGTACG 1 cut(s) 441
PkrI GCNGC 3 cut(s) 329, 759, 909
PscI ACATGT 1 cut(s) 479
Psp124BI GAGCTC 1 cut(s) 260
Psp1406I AACGTT 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 413
PspGI CCWGG 1 cut(s) 413
PspLI CGTACG 1 cut(s) 441
PspN4I GGNNCC 1 cut(s) 420
PspPI GGNCC 2 cut(s) 145, 411
PvuII CAGCTG 1 cut(s) 910
RsaI GTAC 4 cut(s) 350, 359, 443, 721
RsaNI GTAC 4 cut(s) 349, 358, 442, 720
RseI CAYNNNNRTG 1 cut(s) 620
SacI GAGCTC 1 cut(s) 260
SalI GTCGAC 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 3 cut(s) 328, 758, 908
Sau3AI GATC 6 cut(s) 177, 262, 365, 393, 699, 960
Sau96I GGNCC 2 cut(s) 145, 411
ScaI AGTACT 1 cut(s) 721
ScrFI CCNGG 5 cut(s) 133, 149, 217, 415, 576
SduI GDGCHC 2 cut(s) 246, 260
SfuI TTCGAA 4 cut(s) 24, 95, 168, 285
SinI GGWCC 2 cut(s) 145, 411
SmiMI CAYNNNNRTG 1 cut(s) 620
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
Sse9I AATT 5 cut(s) 20, 63, 473, 628, 878
SsiI CCGC 9 cut(s) 138, 239, 311, 327, 330, 363, 560, 760, 905
SspI AATATT 1 cut(s) 232
SspMI CTAG 1 cut(s) 717
SstI GAGCTC 1 cut(s) 260
StyD4I CCNGG 5 cut(s) 131, 147, 215, 413, 574
StyI CCWWGG 3 cut(s) 397, 603, 791
TaaI ACNGT 1 cut(s) 446
TaiI ACGT 2 cut(s) 345, 788
TaqI TCGA 8 cut(s) 5, 24, 38, 95, 168, 285, 368, 581
TaqII GACCGA 2 cut(s) 23, 399
TasI AATT 5 cut(s) 20, 63, 473, 628, 878
TatI WGTACW 1 cut(s) 719
TauI GCSGC 1 cut(s) 330
TfiI GAWTC 4 cut(s) 71, 92, 287, 463
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 1 cut(s) 622
TseFI GTSAC 2 cut(s) 869, 938
TseI GCWGC 2 cut(s) 757, 907
Tsp45I GTSAC 2 cut(s) 869, 938
TspDTI ATGAA 5 cut(s) 292, 446, 447, 525, 686
TspRI CASTG 1 cut(s) 622
VneI GTGCAC 1 cut(s) 242
VpaK11BI GGWCC 2 cut(s) 145, 411
XapI RAATTY 4 cut(s) 20, 63, 473, 878
XceI RCATGY 1 cut(s) 483
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 1 cut(s) 717
ZrmI AGTACT 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.