MD13G1092800.v1.1

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0010041
Physical Location & Seq
Reverse (-)
6549792 .. 6551985
2194 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1092800.v1.1.491

Sequence Viewer

Length: 996 bp
ATGTCGACGGATCAGTTTGAATTCGAAGACCAAATCTCGATGACTATTGATAATGACGAAGAAATTTTGGATTCCGGGTCCGATTGCGGCGATTCGAACGCCGCCGTATCGGATCGGTTTGGTGTTTTCACCCGGAGCGGGATGATACGGGTGGATGACGAGAGTTTAGAGCACGAGATCATCAAGAAGAGCTTTGTTTCGGGCATGGGATTGGCCGGGAGGGACACGAATATTGTGGCGGTGCACAAGAACTTGAGCTCCGATCCGACCAGGAAGGCGAGGTTTGAGTCGTTCAAGATTTTCTCTCAGGCGGTGGCAAGTAAGTGCGGCGGCAACGCCAATGTTAAGTACGCTTGGTATGGCGGATCGAAGCAGGAGCTTTGTGATGTTTTGGTCCATGGTTTCAATCGGTGCAGAGAGCCTGTCCCAAATGAAGTGTCATACGGTGTCGGTGTTCATATGATTCCTGCCAAATTTACATGTGATGGAGCATTGTCGTCGGCTGTGGATGAAAGTGGGCTGAAGCACATCTTGCTGTGCCGTGTGATATTGGGGAAGGCGGAAATGGTGGCGCCGGGCTCTAAGCAATCTCAACCGAGCTGCAAGGAGGTGGACACTGGAGTGGATAATCTGGTAAATCCGAGAAGATATGTTGTTTGGAGTGCTATCATGAACTCTCACATTTATCCTTGCTATGTAGTCAGCTTCAAGGCTCCTAACACTCTCCCTAATGGTGTTCCAACTGCGCAGCAGAGTGCTTTGAGACAACCCCCCACATCTCCATGGATGAGCTTCCCTGCTCTGATGTCCATTCTCTCGAAGTTCTTGCCTCCTCAGAAAATGCAATTGCTTGTTGCTTGTCACAATGAATTCAGAGCGAACAAGGTAACGCGCCCGCAGCTGATACAGAGGGTGAGGCAGATTGCCGGTGACAGGCTGTTGATTGGAGTGATCAAATCTGTCAAGAGGCAGATTGGTGCCAGGGCAAATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

332

Amino Acids

36.32

Weight (kDa)

8.68

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 258 - 322 4.7e-25 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23550 AT1G70440 AT1G70440
fragaria_vesca FvH4_4g34350
malus_domestica MD13G1092800.v1.1 MD16G1093700.v1.1
prunus_persica Prupe.1G252800_v2.0.a1
pyrus_communis pycom13g08070 pycom13g08080 pycom16g07970
rosa_chinensis RchiOBHm_Chr4g0443761
rosa_laevigata RLG00000005892
rosa_multiflora Rmu_co8242545.1_g000001 Rmu_sc0042927.1_g000001
rosa_roxburghii Rroxscaffold_5G00384330
rosa_rugosa Rorug04G0347100
rosa_samantha Rh4AG407300 Rh4BG418200 Rh4CG432500 Rh4DG413500
rosa_wichuraiana Rw4G034980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 747
AccB1I GGYRCC 2 cut(s) 571, 977
AccBSI CCGCTC 1 cut(s) 138
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 892
AclWI GGATC 4 cut(s) 18, 120, 257, 373
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 4 cut(s) 20, 63, 473, 869
AcuI CTGAAG 1 cut(s) 542
AcyI GRCGYC 1 cut(s) 572
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 2 cut(s) 138, 933
AflIII ACRYGT 1 cut(s) 479
AgsI TTSAA 4 cut(s) 20, 295, 406, 709
AjnI CCWGG 2 cut(s) 269, 980
AleI CACNNNNGTG 1 cut(s) 620
AloI GAACNNNNNNTCC 2 cut(s) 242, 274
AluBI AGCT 7 cut(s) 192, 258, 379, 600, 705, 792, 901
AluI AGCT 7 cut(s) 192, 258, 379, 600, 705, 792, 901
Alw21I GWGCWC 3 cut(s) 174, 246, 260
Alw26I GTCTC 1 cut(s) 757
Alw44I GTGCAC 1 cut(s) 242
AlwI GGATC 4 cut(s) 18, 120, 257, 373
AoxI GGCC 1 cut(s) 213
ApaLI GTGCAC 1 cut(s) 242
ApeKI GCWGC 3 cut(s) 600, 748, 898
ApoI RAATTY 4 cut(s) 20, 63, 473, 869
ArsI GACNNNNNNTTYG 2 cut(s) 422, 454
AspLEI GCGC 3 cut(s) 574, 748, 894
AspS9I GGNCC 2 cut(s) 78, 394
AsuC2I CCSGG 4 cut(s) 76, 133, 217, 576
AsuHPI GGTGA 3 cut(s) 121, 925, 941
AsuII TTCGAA 2 cut(s) 24, 95
AvaII GGWCC 2 cut(s) 78, 394
BaeGI GKGCMC 1 cut(s) 246
BanI GGYRCC 2 cut(s) 571, 977
BanII GRGCYC 2 cut(s) 260, 581
BauI CACGAG 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 3 cut(s) 174, 246, 260
BbvI GCAGC 3 cut(s) 587, 760, 910
BccI CCATC 1 cut(s) 479
BceAI ACGGC 2 cut(s) 89, 525
BcgI CGANNNNNNTGC 4 cut(s) 480, 514, 808, 842
BciT130I CCWGG 2 cut(s) 271, 982
BclI TGATCA 1 cut(s) 951
BcnI CCSGG 4 cut(s) 76, 133, 217, 576
BcoDI GTCTC 1 cut(s) 757
BfoI RGCGCY 1 cut(s) 575
BisI GCNGC 7 cut(s) 88, 102, 328, 331, 601, 749, 899
BlsI GCNGC 7 cut(s) 89, 103, 329, 332, 602, 750, 900
Bme1390I CCNGG 6 cut(s) 76, 133, 217, 271, 576, 982
Bme18I GGWCC 2 cut(s) 78, 394
BmgT120I GGNCC 2 cut(s) 78, 394
BmiI GGNNCC 4 cut(s) 79, 573, 714, 979
BmrFI CCNGG 6 cut(s) 76, 133, 217, 271, 576, 982
BpiI GAAGAC 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 639
Bpu14I TTCGAA 2 cut(s) 24, 95
BpuEI CTTGAG 1 cut(s) 274
BpuMI CCSGG 4 cut(s) 76, 133, 217, 576
BsaHI GRCGYC 1 cut(s) 572
BsaJI CCNNGG 3 cut(s) 397, 782, 981
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 933
Bse118I RCCGGY 1 cut(s) 926
Bse1I ACTGG 1 cut(s) 622
BseBI CCWGG 2 cut(s) 271, 982
BseDI CCNNGG 3 cut(s) 397, 782, 981
BseGI GGATG 4 cut(s) 147, 160, 514, 792
BseLI CCNNNNNNNGG 2 cut(s) 138, 933
BseMII CTCAG 2 cut(s) 320, 848
BseNI ACTGG 1 cut(s) 622
BseRI GAGGAG 1 cut(s) 822
BseSI GKGCMC 1 cut(s) 246
BseXI GCAGC 3 cut(s) 587, 760, 910
BsgI GTGCAG 1 cut(s) 433
Bsh1236I CGCG 1 cut(s) 892
BshFI GGCC 1 cut(s) 215
BshNI GGYRCC 2 cut(s) 571, 977
BsiHKAI GWGCWC 3 cut(s) 174, 246, 260
BsiSI CCGG 5 cut(s) 75, 133, 216, 575, 927
BslFI GGGAC 2 cut(s) 236, 410
BslI CCNNNNNNNGG 2 cut(s) 138, 933
BsmAI GTCTC 1 cut(s) 757
BsmFI GGGAC 2 cut(s) 236, 410
BsnI GGCC 1 cut(s) 215
Bsp119I TTCGAA 2 cut(s) 24, 95
Bsp1286I GDGCHC 4 cut(s) 174, 246, 260, 581
Bsp143I GATC 6 cut(s) 10, 112, 177, 262, 365, 951
Bsp19I CCATGG 2 cut(s) 397, 782
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 2 cut(s) 319, 847
BspFNI CGCG 1 cut(s) 892
BspHI TCATGA 1 cut(s) 669
BspLI GGNNCC 4 cut(s) 79, 573, 714, 979
BspPI GGATC 4 cut(s) 18, 120, 257, 373
BspQI GCTCTTC 1 cut(s) 182
BspT104I TTCGAA 2 cut(s) 24, 95
BspT107I GGYRCC 2 cut(s) 571, 977
BsrBI CCGCTC 1 cut(s) 138
BsrFI RCCGGY 1 cut(s) 926
BsrI ACTGG 1 cut(s) 622
BssAI RCCGGY 1 cut(s) 926
BssECI CCNNGG 3 cut(s) 397, 782, 981
BssMI GATC 6 cut(s) 10, 112, 177, 262, 365, 951
BssNI GRCGYC 1 cut(s) 572
BssSI CACGAG 1 cut(s) 173
BssT1I CCWWGG 2 cut(s) 397, 782
Bst2BI CACGAG 1 cut(s) 173
Bst2UI CCWGG 2 cut(s) 271, 982
Bst4CI ACNGT 1 cut(s) 446
Bst6I CTCTTC 1 cut(s) 182
BstACI GRCGYC 1 cut(s) 572
BstAPI GCANNNNNTGC 1 cut(s) 532
BstBI TTCGAA 2 cut(s) 24, 95
BstC8I GCNNGC 1 cut(s) 896
BstDEI CTNAG 3 cut(s) 306, 582, 834
BstDSI CCRYGG 2 cut(s) 397, 782
BstF5I GGATG 4 cut(s) 147, 160, 514, 792
BstFNI CGCG 1 cut(s) 892
BstH2I RGCGCY 1 cut(s) 575
BstHHI GCGC 3 cut(s) 574, 748, 894
BstKTI GATC 6 cut(s) 13, 115, 180, 265, 368, 954
BstMAI GTCTC 1 cut(s) 757
BstMBI GATC 6 cut(s) 10, 112, 177, 262, 365, 951
BstMWI GCNNNNNNNGC 2 cut(s) 532, 898
BstNI CCWGG 2 cut(s) 271, 982
BstNSI RCATGY 1 cut(s) 483
BstSCI CCNGG 6 cut(s) 74, 131, 215, 269, 574, 980
BstSLI GKGCMC 1 cut(s) 246
BstUI CGCG 1 cut(s) 892
BstV1I GCAGC 3 cut(s) 587, 760, 910
BstV2I GAAGAC 1 cut(s) 33
BsuRI GGCC 1 cut(s) 215
BtgI CCRYGG 2 cut(s) 397, 782
BtsCI GGATG 4 cut(s) 147, 160, 514, 792
BtsIMutI CAGTG 1 cut(s) 615
Cac8I GCNNGC 1 cut(s) 896
CciI TCATGA 1 cut(s) 669
CfoI GCGC 3 cut(s) 574, 748, 894
Cfr10I RCCGGY 1 cut(s) 926
Cfr13I GGNCC 2 cut(s) 78, 394
Csp6I GTAC 1 cut(s) 349
CviAII CATG 5 cut(s) 205, 398, 480, 670, 783
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 3 cut(s) 306, 582, 834
DinI GGCGCC 1 cut(s) 573
DpnI GATC 6 cut(s) 12, 114, 179, 264, 367, 953
DpnII GATC 6 cut(s) 10, 112, 177, 262, 365, 951
EaeI YGGCCR 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
EciI GGCGGA 2 cut(s) 378, 575
Ecl136II GAGCTC 1 cut(s) 258
Eco130I CCWWGG 2 cut(s) 397, 782
Eco24I GRGCYC 2 cut(s) 260, 581
Eco47I GGWCC 2 cut(s) 78, 394
Eco53kI GAGCTC 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 542
EcoICRI GAGCTC 1 cut(s) 258
EcoRI GAATTC 2 cut(s) 20, 869
EcoRII CCWGG 2 cut(s) 269, 980
EcoT14I CCWWGG 2 cut(s) 397, 782
EcoT22I ATGCAT 1 cut(s) 994
EcoT38I GRGCYC 2 cut(s) 260, 581
EgeI GGCGCC 1 cut(s) 573
EheI GGCGCC 1 cut(s) 573
ErhI CCWWGG 2 cut(s) 397, 782
FaeI CATG 5 cut(s) 208, 401, 483, 673, 786
FalI AAGNNNNNCTT 4 cut(s) 176, 208, 515, 547
FaqI GGGAC 2 cut(s) 236, 410
FatI CATG 5 cut(s) 204, 397, 479, 669, 782
FauI CCCGC 2 cut(s) 131, 903
FauNDI CATATG 1 cut(s) 459
FbaI TGATCA 1 cut(s) 951
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 7 cut(s) 88, 102, 328, 331, 601, 749, 899
FokI GGATG 4 cut(s) 154, 167, 521, 799
FriOI GRGCYC 2 cut(s) 260, 581
Fsp4HI GCNGC 7 cut(s) 88, 102, 328, 331, 601, 749, 899
FspI TGCGCA 1 cut(s) 747
GlaI GCGC 3 cut(s) 573, 747, 893
GluI GCNGC 7 cut(s) 88, 102, 328, 331, 601, 749, 899
GsuI CTGGAG 1 cut(s) 639
HaeII RGCGCY 1 cut(s) 575
HaeIII GGCC 1 cut(s) 215
HapII CCGG 5 cut(s) 75, 133, 216, 575, 927
HhaI GCGC 3 cut(s) 574, 748, 894
Hin1I GRCGYC 1 cut(s) 572
Hin1II CATG 5 cut(s) 208, 401, 483, 673, 786
Hin6I GCGC 3 cut(s) 572, 746, 892
HinP1I GCGC 3 cut(s) 572, 746, 892
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 4 cut(s) 71, 92, 287, 463
HpaII CCGG 5 cut(s) 75, 133, 216, 575, 927
HphI GGTGA 3 cut(s) 121, 925, 941
Hpy166II GTNNAC 3 cut(s) 6, 244, 613
Hpy188I TCNGA 8 cut(s) 82, 112, 262, 267, 642, 804, 837, 875
Hpy188III TCNNGA 6 cut(s) 37, 184, 295, 670, 817, 964
Hpy8I GTNNAC 3 cut(s) 6, 244, 613
Hpy99I CGWCG 2 cut(s) 10, 502
HpyAV CCTTC 2 cut(s) 268, 550
HpyCH4III ACNGT 1 cut(s) 446
HpyCH4V TGCA 5 cut(s) 244, 414, 603, 844, 992
HpyF10VI GCNNNNNNNGC 2 cut(s) 532, 898
HpyF3I CTNAG 3 cut(s) 306, 582, 834
Hsp92I GRCGYC 1 cut(s) 572
Hsp92II CATG 5 cut(s) 208, 401, 483, 673, 786
HspAI GCGC 3 cut(s) 572, 746, 892
KasI GGCGCC 1 cut(s) 571
Ksp22I TGATCA 1 cut(s) 951
Kzo9I GATC 6 cut(s) 10, 112, 177, 262, 365, 951
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 5 cut(s) 135, 263, 376, 488, 718
Lsp1109I GCAGC 3 cut(s) 587, 760, 910
MaeIII GTNAC 3 cut(s) 860, 886, 929
MalI GATC 6 cut(s) 12, 114, 179, 264, 367, 953
MbiI CCGCTC 1 cut(s) 138
MboI GATC 6 cut(s) 10, 112, 177, 262, 365, 951
MboII GAAGA 4 cut(s) 38, 71, 199, 657
MfeI CAATTG 1 cut(s) 845
MhlI GDGCHC 4 cut(s) 174, 246, 260, 581
MluCI AATT 5 cut(s) 20, 63, 473, 845, 869
Mly113I GGCGCC 1 cut(s) 572
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 2 cut(s) 290, 764
MnlI CCTC 8 cut(s) 213, 273, 601, 840, 843, 903, 909, 960
Mph1103I ATGCAT 1 cut(s) 994
MseI TTAA 1 cut(s) 345
MslI CAYNNNNRTG 2 cut(s) 620, 781
MspA1I CMGCKG 1 cut(s) 901
MspI CCGG 5 cut(s) 75, 133, 216, 575, 927
MspR9I CCNGG 6 cut(s) 76, 133, 217, 271, 576, 982
MunI CAATTG 1 cut(s) 845
MvaI CCWGG 2 cut(s) 271, 982
MvnI CGCG 1 cut(s) 892
MwoI GCNNNNNNNGC 2 cut(s) 532, 898
NarI GGCGCC 1 cut(s) 572
NciI CCSGG 4 cut(s) 76, 133, 217, 576
NcoI CCATGG 2 cut(s) 397, 782
NdeI CATATG 1 cut(s) 459
NdeII GATC 6 cut(s) 10, 112, 177, 262, 365, 951
NlaIII CATG 5 cut(s) 208, 401, 483, 673, 786
NlaIV GGNNCC 4 cut(s) 79, 573, 714, 979
NmuCI GTSAC 2 cut(s) 860, 929
NsbI TGCGCA 1 cut(s) 747
NsiI ATGCAT 1 cut(s) 994
NspI RCATGY 1 cut(s) 483
NspV TTCGAA 2 cut(s) 24, 95
OliI CACNNNNGTG 1 cut(s) 620
PagI TCATGA 1 cut(s) 669
PciI ACATGT 1 cut(s) 479
PciSI GCTCTTC 1 cut(s) 182
PfeI GAWTC 3 cut(s) 71, 92, 463
PkrI GCNGC 7 cut(s) 89, 103, 329, 332, 602, 750, 900
PleI GAGTC 1 cut(s) 295
PluTI GGCGCC 1 cut(s) 575
PpsI GAGTC 1 cut(s) 295
PscI ACATGT 1 cut(s) 479
Psp124BI GAGCTC 1 cut(s) 260
Psp6I CCWGG 2 cut(s) 269, 980
PspGI CCWGG 2 cut(s) 269, 980
PspN4I GGNNCC 4 cut(s) 79, 573, 714, 979
PspPI GGNCC 2 cut(s) 78, 394
PvuII CAGCTG 1 cut(s) 901
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 2 cut(s) 620, 781
SacI GAGCTC 1 cut(s) 260
SalI GTCGAC 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 7 cut(s) 88, 102, 328, 331, 601, 749, 899
Sau3AI GATC 6 cut(s) 10, 112, 177, 262, 365, 951
Sau96I GGNCC 2 cut(s) 78, 394
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 6 cut(s) 76, 133, 217, 271, 576, 982
SduI GDGCHC 4 cut(s) 174, 246, 260, 581
SfoI GGCGCC 1 cut(s) 573
SfuI TTCGAA 2 cut(s) 24, 95
SinI GGWCC 2 cut(s) 78, 394
SmiMI CAYNNNNRTG 2 cut(s) 620, 781
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
Sse9I AATT 5 cut(s) 20, 63, 473, 845, 869
SspDI GGCGCC 1 cut(s) 571
SspI AATATT 1 cut(s) 232
SstI GAGCTC 1 cut(s) 260
StyD4I CCNGG 6 cut(s) 74, 131, 215, 269, 574, 980
StyI CCWWGG 2 cut(s) 397, 782
TaaI ACNGT 1 cut(s) 446
TaqI TCGA 6 cut(s) 5, 24, 38, 95, 368, 818
TasI AATT 5 cut(s) 20, 63, 473, 845, 869
TauI GCSGC 4 cut(s) 90, 104, 330, 333
TfiI GAWTC 3 cut(s) 71, 92, 463
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 1 cut(s) 622
TseFI GTSAC 2 cut(s) 860, 929
TseI GCWGC 3 cut(s) 600, 748, 898
Tsp45I GTSAC 2 cut(s) 860, 929
TspDTI ATGAA 5 cut(s) 446, 447, 525, 686, 882
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 622
VneI GTGCAC 1 cut(s) 242
VpaK11BI GGWCC 2 cut(s) 78, 394
XapI RAATTY 4 cut(s) 20, 63, 473, 869
XceI RCATGY 1 cut(s) 483
XmiI GTMKAC 1 cut(s) 5
Zsp2I ATGCAT 1 cut(s) 994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.