Rh4DG413500

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0010041
Physical Location & Seq
Forward (+)
62426914 .. 62428190
1277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG413500.1

Sequence Viewer

Length: 969 bp
ATGGCACAGATCGAACAGATTAGTGAGTACCAAGCCTCCATGATTGTTGATGATGACGAAAAAAGCCACGATTCCGGGTCGGACTGCTCCAAATCGGTTGTTTCGGATCGGTTCGAGGTTTTCACTCGGATGAGATTGGTTAGGTTGGAAGAAGATAGTATAGAGCATGAGTTTACCAAGAAGATGTTCGCCGTCGGGATGGAGTCGAACGGAGTAGACGCCAAGGTTGTGGCGGTTCACAAGAATCTGCATTCTGGGTGGACCAGGCGAGCCAGGTGCGAAACGTTTCTCATCTTTCAGAAGGCGGTGGCTCAGAAATGCGGCGGAAACGCCAATATCGGATACGGCTGGTACGGCGGGTCCCGGGATGAGATCTGCGATATACTGTTGCATGGGTTTAGTGGGTGCAGAGCGGCCGGGTCTCACGGGGTTGGAATTCAATTGTTTGCTAATAACTATTCTTTTGATGGTGCAATATCATCAGACACTGATGAGAATGGGCTGAGGCACATGTTGCTGTGCAGAGTCATATTGGGGAAGAGAGAATTGGTGCCTGCTGGTTCAAACCAAGTTAATCCCAGTTCCAAGGAGTTTGATTCTGGTGTCGACAGTCTTGTGAATCCGAAAAGATTTATCATATGGAGCTCTTTCATGAACTCTCATATTATGCCTCTTTTTGTTGTCAGCTTCAAGGCTCCTGCTAACTTGAAGGATATTCCAAGGAGCATTCAGGCGAGTGCTGCTGCTGTAAGACCACCACCCAAGTCGGCTTGGGTGAATCTCACTGCTATGATGAACGCCCTCGCTAAGGTCTTGCCTCCTCCTAGAATGGTTCTGCTTTCCAAATCCGCTGACGATTTCAGGGCGAAGAAGATTACTAGACCTCAGCTGATTAGAAGAGTGAGAACTCTAGCAGGCGACAAATTGCTGGTTTCGGTGGTCAAAAACTTTAACAAGGAGCGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

322

Amino Acids

35.69

Weight (kDa)

9.19

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 254 - 317 1.1e-17 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23550 AT1G70440 AT1G70440
fragaria_vesca FvH4_4g34350
malus_domestica MD13G1092800.v1.1 MD16G1093700.v1.1
prunus_persica Prupe.1G252800_v2.0.a1
pyrus_communis pycom13g08070 pycom13g08080 pycom16g07970
rosa_chinensis RchiOBHm_Chr4g0443761
rosa_laevigata RLG00000005892
rosa_multiflora Rmu_co8242545.1_g000001 Rmu_sc0042927.1_g000001
rosa_roxburghii Rroxscaffold_5G00384330
rosa_rugosa Rorug04G0347100
rosa_samantha Rh4AG407300 Rh4BG418200 Rh4CG432500 Rh4DG413500
rosa_wichuraiana Rw4G034980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 550
AccBSI CCGCTC 2 cut(s) 413, 961
AccI GTMKAC 2 cut(s) 216, 606
AciI CCGC 8 cut(s) 233, 305, 321, 324, 357, 413, 849, 961
AclI AACGTT 1 cut(s) 284
AclWI GGATC 1 cut(s) 114
AcoI YGGCCR 1 cut(s) 414
AcsI RAATTY 1 cut(s) 435
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 2 cut(s) 29, 353
AfiI CCNNNNNNNGG 1 cut(s) 808
AflIII ACRYGT 1 cut(s) 510
AgsI TTSAA 4 cut(s) 440, 564, 691, 709
AjnI CCWGG 2 cut(s) 263, 272
AjuI GAANNNNNNNTTGG 4 cut(s) 170, 202, 530, 562
AluBI AGCT 3 cut(s) 645, 687, 889
AluI AGCT 3 cut(s) 645, 687, 889
Alw21I GWGCWC 1 cut(s) 647
Alw26I GTCTC 1 cut(s) 426
AlwI GGATC 1 cut(s) 114
AlwNI CAGNNNCTG 1 cut(s) 488
Ama87I CYCGRG 1 cut(s) 363
AoxI GGCC 1 cut(s) 414
ApeKI GCWGC 2 cut(s) 740, 743
ApoI RAATTY 1 cut(s) 435
Asp700I GAANNNNTTC 2 cut(s) 185, 285
AspS9I GGNCC 2 cut(s) 261, 360
AsuC2I CCSGG 4 cut(s) 76, 364, 365, 418
AsuHPI GGTGA 1 cut(s) 787
AvaI CYCGRG 1 cut(s) 363
AvaII GGWCC 2 cut(s) 261, 360
BanI GGYRCC 1 cut(s) 550
BanII GRGCYC 1 cut(s) 647
Bbv12I GWGCWC 1 cut(s) 647
BbvCI CCTCAGC 2 cut(s) 503, 885
BbvI GCAGC 2 cut(s) 727, 730
BccI CCATC 2 cut(s) 193, 461
BceAI ACGGC 3 cut(s) 176, 361, 370
BcgI CGANNNNNNTGC 2 cut(s) 258, 292
BciT130I CCWGG 2 cut(s) 265, 274
BciVI GTATCC 1 cut(s) 335
BcnI CCSGG 4 cut(s) 76, 364, 365, 418
BcoDI GTCTC 1 cut(s) 426
BfaI CTAG 3 cut(s) 825, 879, 911
BfuI GTATCC 1 cut(s) 335
BglII AGATCT 1 cut(s) 372
BisI GCNGC 4 cut(s) 322, 414, 741, 744
BlsI GCNGC 4 cut(s) 323, 415, 742, 745
Bme1390I CCNGG 6 cut(s) 76, 265, 274, 364, 365, 418
Bme18I GGWCC 2 cut(s) 261, 360
BmeT110I CYCGRG 1 cut(s) 363
BmgT120I GGNCC 2 cut(s) 261, 360
BmiI GGNNCC 4 cut(s) 361, 362, 552, 696
BmrFI CCNGG 6 cut(s) 76, 265, 274, 364, 365, 418
BmrI ACTGGG 1 cut(s) 573
BmuI ACTGGG 1 cut(s) 573
Bpu10I CCTNAGC 3 cut(s) 503, 807, 885
BpuMI CCSGG 4 cut(s) 76, 364, 365, 418
BsaHI GRCGYC 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 426
BsaJI CCNNGG 4 cut(s) 222, 363, 585, 719
BsaXI ACNNNNNCTCC 3 cut(s) 20, 50, 950
Bsc4I CCNNNNNNNGG 1 cut(s) 808
Bse1I ACTGG 1 cut(s) 579
BseBI CCWGG 2 cut(s) 265, 274
BseDI CCNNGG 4 cut(s) 222, 363, 585, 719
BseGI GGATG 3 cut(s) 135, 204, 373
BseLI CCNNNNNNNGG 1 cut(s) 808
BseMII CTCAG 3 cut(s) 326, 494, 899
BseNI ACTGG 1 cut(s) 579
BseRI GAGGAG 1 cut(s) 810
BseX3I CGGCCG 1 cut(s) 414
BseXI GCAGC 2 cut(s) 727, 730
BsgI GTGCAG 2 cut(s) 427, 541
Bsh1285I CGRYCG 1 cut(s) 417
BshFI GGCC 1 cut(s) 416
BshNI GGYRCC 1 cut(s) 550
BsiEI CGRYCG 1 cut(s) 417
BsiHKAI GWGCWC 1 cut(s) 647
BsiHKCI CYCGRG 1 cut(s) 363
BsiSI CCGG 3 cut(s) 75, 364, 417
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 808
BsmAI GTCTC 1 cut(s) 426
BsmFI GGGAC 1 cut(s) 346
BsmI GAATGC 2 cut(s) 250, 726
BsnI GGCC 1 cut(s) 416
Bso31I GGTCTC 1 cut(s) 426
BsoBI CYCGRG 1 cut(s) 363
Bsp1286I GDGCHC 1 cut(s) 647
Bsp143I GATC 3 cut(s) 9, 106, 372
BspACI CCGC 8 cut(s) 233, 305, 321, 324, 357, 413, 849, 961
BspANI GGCC 1 cut(s) 416
BspCNI CTCAG 3 cut(s) 325, 495, 898
BspHI TCATGA 1 cut(s) 651
BspLI GGNNCC 4 cut(s) 361, 362, 552, 696
BspPI GGATC 1 cut(s) 114
BspT107I GGYRCC 1 cut(s) 550
BspTNI GGTCTC 1 cut(s) 426
BsrBI CCGCTC 2 cut(s) 413, 961
BsrI ACTGG 1 cut(s) 579
BssECI CCNNGG 4 cut(s) 222, 363, 585, 719
BssMI GATC 3 cut(s) 9, 106, 372
BssNI GRCGYC 1 cut(s) 219
BssT1I CCWWGG 3 cut(s) 222, 585, 719
Bst2UI CCWGG 2 cut(s) 265, 274
Bst4CI ACNGT 2 cut(s) 387, 611
Bst6I CTCTTC 2 cut(s) 533, 892
BstACI GRCGYC 1 cut(s) 219
BstAPI GCANNNNNTGC 1 cut(s) 514
BstC8I GCNNGC 3 cut(s) 270, 555, 916
BstDEI CTNAG 4 cut(s) 312, 503, 807, 885
BstENI CCTNNNNNAGG 1 cut(s) 806
BstF5I GGATG 3 cut(s) 135, 204, 373
BstKTI GATC 3 cut(s) 12, 109, 375
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 3 cut(s) 9, 106, 372
BstMCI CGRYCG 1 cut(s) 417
BstMWI GCNNNNNNNGC 3 cut(s) 354, 514, 740
BstNI CCWGG 2 cut(s) 265, 274
BstNSI RCATGY 1 cut(s) 514
BstSCI CCNGG 6 cut(s) 74, 263, 272, 362, 363, 416
BstV1I GCAGC 2 cut(s) 727, 730
BstX2I RGATCY 1 cut(s) 372
BstXI CCANNNNNNTGG 1 cut(s) 229
BstYI RGATCY 1 cut(s) 372
BstZI CGGCCG 1 cut(s) 414
BsuI GTATCC 1 cut(s) 335
BsuRI GGCC 1 cut(s) 416
BtsCI GGATG 3 cut(s) 135, 204, 373
BtsI GCAGTG 1 cut(s) 783
BtsIMutI CAGTG 2 cut(s) 486, 783
Cac8I GCNNGC 3 cut(s) 270, 555, 916
CaiI CAGNNNCTG 1 cut(s) 488
CciI TCATGA 1 cut(s) 651
Cfr13I GGNCC 2 cut(s) 261, 360
Cfr9I CCCGGG 1 cut(s) 363
CseI GACGC 1 cut(s) 227
Csp6I GTAC 2 cut(s) 28, 352
CviAII CATG 5 cut(s) 40, 167, 392, 511, 652
CviQI GTAC 2 cut(s) 28, 352
DdeI CTNAG 4 cut(s) 312, 503, 807, 885
DpnI GATC 3 cut(s) 11, 108, 374
DpnII GATC 3 cut(s) 9, 106, 372
EaeI YGGCCR 1 cut(s) 414
EagI CGGCCG 1 cut(s) 414
Eam1104I CTCTTC 2 cut(s) 533, 892
EarI CTCTTC 2 cut(s) 533, 892
EciI GGCGGA 1 cut(s) 339
Ecl136II GAGCTC 1 cut(s) 645
EclXI CGGCCG 1 cut(s) 414
Eco130I CCWWGG 3 cut(s) 222, 585, 719
Eco24I GRGCYC 1 cut(s) 647
Eco31I GGTCTC 1 cut(s) 426
Eco47I GGWCC 2 cut(s) 261, 360
Eco52I CGGCCG 1 cut(s) 414
Eco53kI GAGCTC 1 cut(s) 645
Eco88I CYCGRG 1 cut(s) 363
EcoICRI GAGCTC 1 cut(s) 645
EcoNI CCTNNNNNAGG 1 cut(s) 806
EcoO109I RGGNCCY 1 cut(s) 360
EcoRI GAATTC 1 cut(s) 435
EcoRII CCWGG 2 cut(s) 263, 272
EcoT14I CCWWGG 3 cut(s) 222, 585, 719
EcoT38I GRGCYC 1 cut(s) 647
ErhI CCWWGG 3 cut(s) 222, 585, 719
FaeI CATG 5 cut(s) 43, 170, 395, 514, 655
FaqI GGGAC 1 cut(s) 346
FatI CATG 5 cut(s) 39, 166, 391, 510, 651
FauI CCCGC 2 cut(s) 350, 954
FauNDI CATATG 1 cut(s) 638
FblI GTMKAC 2 cut(s) 216, 606
Fnu4HI GCNGC 4 cut(s) 322, 414, 741, 744
FokI GGATG 3 cut(s) 142, 211, 380
FriOI GRGCYC 1 cut(s) 647
Fsp4HI GCNGC 4 cut(s) 322, 414, 741, 744
FspBI CTAG 3 cut(s) 825, 879, 911
GluI GCNGC 4 cut(s) 322, 414, 741, 744
HaeIII GGCC 1 cut(s) 416
HapII CCGG 3 cut(s) 75, 364, 417
HgaI GACGC 1 cut(s) 227
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 5 cut(s) 43, 170, 395, 514, 655
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HinfI GANTC 7 cut(s) 71, 203, 244, 525, 596, 619, 778
HpaII CCGG 3 cut(s) 75, 364, 417
HphI GGTGA 1 cut(s) 787
Hpy166II GTNNAC 5 cut(s) 174, 217, 238, 261, 607
Hpy188I TCNGA 8 cut(s) 82, 106, 129, 300, 315, 341, 484, 624
Hpy188III TCNNGA 2 cut(s) 196, 652
Hpy8I GTNNAC 5 cut(s) 174, 217, 238, 261, 607
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 2 cut(s) 295, 703
HpyCH4III ACNGT 2 cut(s) 387, 611
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 5 cut(s) 250, 391, 408, 473, 522
HpyF10VI GCNNNNNNNGC 3 cut(s) 354, 514, 740
HpyF3I CTNAG 4 cut(s) 312, 503, 807, 885
HpySE526I ACGT 1 cut(s) 284
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 5 cut(s) 43, 170, 395, 514, 655
KflI GGGWCCC 1 cut(s) 360
Kzo9I GATC 3 cut(s) 9, 106, 372
LmnI GCTCC 5 cut(s) 92, 642, 700, 723, 958
Lsp1109I GCAGC 2 cut(s) 727, 730
MaeI CTAG 3 cut(s) 825, 879, 911
MaeII ACGT 1 cut(s) 284
MalI GATC 3 cut(s) 11, 108, 374
MbiI CCGCTC 2 cut(s) 413, 961
MboI GATC 3 cut(s) 9, 106, 372
MboII GAAGA 7 cut(s) 161, 164, 193, 550, 880, 883, 909
MfeI CAATTG 1 cut(s) 440
MflI RGATCY 1 cut(s) 372
MhlI GDGCHC 1 cut(s) 647
MluCI AATT 4 cut(s) 435, 440, 545, 923
MlyI GAGTC 2 cut(s) 212, 534
MmeI TCCRAC 3 cut(s) 60, 126, 412
MnlI CCTC 8 cut(s) 46, 109, 498, 681, 812, 828, 831, 894
MroXI GAANNNNTTC 2 cut(s) 185, 285
MseI TTAA 2 cut(s) 573, 951
MslI CAYNNNNRTG 2 cut(s) 128, 788
MspA1I CMGCKG 2 cut(s) 851, 889
MspI CCGG 3 cut(s) 75, 364, 417
MspR9I CCNGG 6 cut(s) 76, 265, 274, 364, 365, 418
MunI CAATTG 1 cut(s) 440
Mva1269I GAATGC 2 cut(s) 250, 726
MvaI CCWGG 2 cut(s) 265, 274
MwoI GCNNNNNNNGC 3 cut(s) 354, 514, 740
NciI CCSGG 4 cut(s) 76, 364, 365, 418
NdeI CATATG 1 cut(s) 638
NdeII GATC 3 cut(s) 9, 106, 372
NlaIII CATG 5 cut(s) 43, 170, 395, 514, 655
NlaIV GGNNCC 4 cut(s) 361, 362, 552, 696
NspI RCATGY 1 cut(s) 514
PagI TCATGA 1 cut(s) 651
PciI ACATGT 1 cut(s) 510
PctI GAATGC 2 cut(s) 250, 726
PdmI GAANNNNTTC 2 cut(s) 185, 285
PfeI GAWTC 5 cut(s) 71, 244, 596, 619, 778
PkrI GCNGC 4 cut(s) 323, 415, 742, 745
PleI GAGTC 2 cut(s) 211, 533
PpsI GAGTC 2 cut(s) 211, 533
PpuMI RGGWCCY 1 cut(s) 360
PscI ACATGT 1 cut(s) 510
Psp124BI GAGCTC 1 cut(s) 647
Psp1406I AACGTT 1 cut(s) 284
Psp5II RGGWCCY 1 cut(s) 360
Psp6I CCWGG 2 cut(s) 263, 272
PspGI CCWGG 2 cut(s) 263, 272
PspN4I GGNNCC 4 cut(s) 361, 362, 552, 696
PspPI GGNCC 2 cut(s) 261, 360
PspPPI RGGWCCY 1 cut(s) 360
PstNI CAGNNNCTG 1 cut(s) 488
PsuI RGATCY 1 cut(s) 372
PvuII CAGCTG 1 cut(s) 889
RsaI GTAC 2 cut(s) 29, 353
RsaNI GTAC 2 cut(s) 28, 352
RseI CAYNNNNRTG 2 cut(s) 128, 788
SacI GAGCTC 1 cut(s) 647
SalI GTCGAC 1 cut(s) 605
SaqAI TTAA 2 cut(s) 573, 951
SatI GCNGC 4 cut(s) 322, 414, 741, 744
Sau3AI GATC 3 cut(s) 9, 106, 372
Sau96I GGNCC 2 cut(s) 261, 360
SchI GAGTC 2 cut(s) 212, 534
ScrFI CCNGG 6 cut(s) 76, 265, 274, 364, 365, 418
SduI GDGCHC 1 cut(s) 647
SinI GGWCC 2 cut(s) 261, 360
SmaI CCCGGG 1 cut(s) 365
SmiMI CAYNNNNRTG 2 cut(s) 128, 788
Sse9I AATT 4 cut(s) 435, 440, 545, 923
SsiI CCGC 8 cut(s) 233, 305, 321, 324, 357, 413, 849, 961
SspMI CTAG 3 cut(s) 825, 879, 911
SstI GAGCTC 1 cut(s) 647
StyD4I CCNGG 6 cut(s) 74, 263, 272, 362, 363, 416
StyI CCWWGG 3 cut(s) 222, 585, 719
TaaI ACNGT 2 cut(s) 387, 611
TaiI ACGT 1 cut(s) 287
TaqI TCGA 4 cut(s) 12, 114, 206, 606
TasI AATT 4 cut(s) 435, 440, 545, 923
TauI GCSGC 2 cut(s) 324, 416
TfiI GAWTC 5 cut(s) 71, 244, 596, 619, 778
Tru1I TTAA 2 cut(s) 573, 951
Tru9I TTAA 2 cut(s) 573, 951
TscAI CASTG 2 cut(s) 493, 790
TseI GCWGC 2 cut(s) 740, 743
TspDTI ATGAA 3 cut(s) 640, 668, 809
TspGWI ACGGA 1 cut(s) 225
TspMI CCCGGG 1 cut(s) 363
TspRI CASTG 2 cut(s) 493, 790
VpaK11BI GGWCC 2 cut(s) 261, 360
XagI CCTNNNNNAGG 1 cut(s) 806
XapI RAATTY 1 cut(s) 435
XceI RCATGY 1 cut(s) 514
XmaI CCCGGG 1 cut(s) 363
XmiI GTMKAC 2 cut(s) 216, 606
XmnI GAANNNNTTC 2 cut(s) 185, 285
XspI CTAG 3 cut(s) 825, 879, 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.