Rmu_co8242545.1_g000001

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8242545.1
OG0010041
Physical Location & Seq
Reverse (-)
159 .. 775
617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8242545.1_g000001.1.cds

Sequence Viewer

Length: 523 bp
gaacggagtagacgccaaggttgtggcggttcacaagaatctgcattctgggtggaccaggcgagccaggtgcgaaacgtttctgatctttcagaaggcggtggctcagaaatgcggcggaaacgccaatatcggatacggctggtacggcgggtcccgggatgagatctgtgatatcctgttgcatgggtttagtgggtgcagagcggccgggtctcacgggcttggaattcaattgtttgctaataactattcttttgatggtgctatatcatcagacactgatgagaatgggctgaggcacatgttgctgtgcagagtcatattggggaagagagaattggtgcctgctggttcaaaccaagttaatcccagctccaaggagtttgattctggtgtggacagtcttgtgaatccgaaaagatttatcatatggagctctttcatgaactctcatattatgcctctttttgttgtcagcttcaaggctcctgctaacttgaagggtaagaacactgcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

173

Amino Acids

18.79

Weight (kDa)

9.23

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23550 AT1G70440 AT1G70440
fragaria_vesca FvH4_4g34350
malus_domestica MD13G1092800.v1.1 MD16G1093700.v1.1
prunus_persica Prupe.1G252800_v2.0.a1
pyrus_communis pycom13g08070 pycom13g08080 pycom16g07970
rosa_chinensis RchiOBHm_Chr4g0443761
rosa_laevigata RLG00000005892
rosa_multiflora Rmu_co8242545.1_g000001 Rmu_sc0042927.1_g000001
rosa_roxburghii Rroxscaffold_5G00384330
rosa_rugosa Rorug04G0347100
rosa_samantha Rh4AG407300 Rh4BG418200 Rh4CG432500 Rh4DG413500
rosa_wichuraiana Rw4G034980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 344
AccBSI CCGCTC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 10
AciI CCGC 6 cut(s) 27, 99, 115, 118, 151, 207
AclI AACGTT 1 cut(s) 78
AcoI YGGCCR 1 cut(s) 208
AcsI RAATTY 1 cut(s) 229
AcyI GRCGYC 1 cut(s) 13
AfaI GTAC 1 cut(s) 147
AflIII ACRYGT 1 cut(s) 304
AgsI TTSAA 4 cut(s) 234, 358, 485, 503
AjnI CCWGG 2 cut(s) 57, 66
AjuI GAANNNNNNNTTGG 2 cut(s) 324, 356
AluBI AGCT 3 cut(s) 376, 439, 481
AluI AGCT 3 cut(s) 376, 439, 481
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 1 cut(s) 220
AlwNI CAGNNNCTG 1 cut(s) 282
Ama87I CYCGRG 1 cut(s) 157
AoxI GGCC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 229
Asp700I GAANNNNTTC 1 cut(s) 79
AspS9I GGNCC 2 cut(s) 55, 154
AsuC2I CCSGG 3 cut(s) 158, 159, 212
AvaI CYCGRG 1 cut(s) 157
AvaII GGWCC 2 cut(s) 55, 154
BanI GGYRCC 1 cut(s) 344
BanII GRGCYC 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 441
BbvCI CCTCAGC 1 cut(s) 297
BccI CCATC 1 cut(s) 255
BceAI ACGGC 2 cut(s) 155, 164
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BciT130I CCWGG 2 cut(s) 59, 68
BciVI GTATCC 1 cut(s) 129
BcnI CCSGG 3 cut(s) 158, 159, 212
BcoDI GTCTC 1 cut(s) 220
BfuI GTATCC 1 cut(s) 129
BglII AGATCT 1 cut(s) 166
BisI GCNGC 2 cut(s) 116, 208
BlsI GCNGC 2 cut(s) 117, 209
Bme1390I CCNGG 5 cut(s) 59, 68, 158, 159, 212
Bme18I GGWCC 2 cut(s) 55, 154
BmeT110I CYCGRG 1 cut(s) 157
BmgT120I GGNCC 2 cut(s) 55, 154
BmiI GGNNCC 4 cut(s) 155, 156, 346, 490
BmrFI CCNGG 5 cut(s) 59, 68, 158, 159, 212
Bpu10I CCTNAGC 1 cut(s) 297
BpuMI CCSGG 3 cut(s) 158, 159, 212
BsaHI GRCGYC 1 cut(s) 13
BsaI GGTCTC 1 cut(s) 220
BsaJI CCNNGG 3 cut(s) 16, 157, 379
BseBI CCWGG 2 cut(s) 59, 68
BseDI CCNNGG 3 cut(s) 16, 157, 379
BseGI GGATG 1 cut(s) 167
BseMII CTCAG 2 cut(s) 120, 288
BseX3I CGGCCG 1 cut(s) 208
BseYI CCCAGC 1 cut(s) 372
BsgI GTGCAG 2 cut(s) 221, 335
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 1 cut(s) 210
BshNI GGYRCC 1 cut(s) 344
BsiEI CGRYCG 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 441
BsiHKCI CYCGRG 1 cut(s) 157
BsiSI CCGG 2 cut(s) 158, 211
BslFI GGGAC 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 220
BsmFI GGGAC 1 cut(s) 140
BsmI GAATGC 1 cut(s) 44
BsnI GGCC 1 cut(s) 210
Bso31I GGTCTC 1 cut(s) 220
BsoBI CYCGRG 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 441
Bsp143I GATC 2 cut(s) 85, 166
BspACI CCGC 6 cut(s) 27, 99, 115, 118, 151, 207
BspANI GGCC 1 cut(s) 210
BspCNI CTCAG 2 cut(s) 119, 289
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 4 cut(s) 155, 156, 346, 490
BspT107I GGYRCC 1 cut(s) 344
BspTNI GGTCTC 1 cut(s) 220
BsrBI CCGCTC 1 cut(s) 207
BssECI CCNNGG 3 cut(s) 16, 157, 379
BssMI GATC 2 cut(s) 85, 166
BssNI GRCGYC 1 cut(s) 13
BssT1I CCWWGG 2 cut(s) 16, 379
Bst2UI CCWGG 2 cut(s) 59, 68
Bst4CI ACNGT 1 cut(s) 405
Bst6I CTCTTC 1 cut(s) 327
BstACI GRCGYC 1 cut(s) 13
BstAPI GCANNNNNTGC 1 cut(s) 308
BstC8I GCNNGC 2 cut(s) 64, 349
BstDEI CTNAG 2 cut(s) 106, 297
BstF5I GGATG 1 cut(s) 167
BstKTI GATC 2 cut(s) 88, 169
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 2 cut(s) 85, 166
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 2 cut(s) 148, 308
BstNI CCWGG 2 cut(s) 59, 68
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 5 cut(s) 57, 66, 156, 157, 210
BstX2I RGATCY 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 23
BstYI RGATCY 1 cut(s) 166
BstZI CGGCCG 1 cut(s) 208
BsuI GTATCC 1 cut(s) 129
BsuRI GGCC 1 cut(s) 210
BtsCI GGATG 1 cut(s) 167
BtsI GCAGTG 1 cut(s) 514
BtsIMutI CAGTG 2 cut(s) 280, 514
Cac8I GCNNGC 2 cut(s) 64, 349
CaiI CAGNNNCTG 1 cut(s) 282
CciI TCATGA 1 cut(s) 445
Cfr13I GGNCC 2 cut(s) 55, 154
Cfr9I CCCGGG 1 cut(s) 157
CseI GACGC 1 cut(s) 21
Csp6I GTAC 1 cut(s) 146
CviAII CATG 3 cut(s) 186, 305, 446
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 2 cut(s) 106, 297
DpnI GATC 2 cut(s) 87, 168
DpnII GATC 2 cut(s) 85, 166
EaeI YGGCCR 1 cut(s) 208
EagI CGGCCG 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
EciI GGCGGA 1 cut(s) 133
Ecl136II GAGCTC 1 cut(s) 439
EclXI CGGCCG 1 cut(s) 208
Eco130I CCWWGG 2 cut(s) 16, 379
Eco24I GRGCYC 1 cut(s) 441
Eco31I GGTCTC 1 cut(s) 220
Eco32I GATATC 1 cut(s) 176
Eco47I GGWCC 2 cut(s) 55, 154
Eco52I CGGCCG 1 cut(s) 208
Eco53kI GAGCTC 1 cut(s) 439
Eco88I CYCGRG 1 cut(s) 157
EcoICRI GAGCTC 1 cut(s) 439
EcoO109I RGGNCCY 1 cut(s) 154
EcoRI GAATTC 1 cut(s) 229
EcoRII CCWGG 2 cut(s) 57, 66
EcoRV GATATC 1 cut(s) 176
EcoT14I CCWWGG 2 cut(s) 16, 379
EcoT38I GRGCYC 1 cut(s) 441
ErhI CCWWGG 2 cut(s) 16, 379
FaeI CATG 3 cut(s) 189, 308, 449
FaiI YATR 9 cut(s) 187, 270, 306, 324, 432, 434, 447, 457, 462
FaqI GGGAC 1 cut(s) 140
FatI CATG 3 cut(s) 185, 304, 445
FauI CCCGC 1 cut(s) 144
FauNDI CATATG 1 cut(s) 432
FblI GTMKAC 1 cut(s) 10
Fnu4HI GCNGC 2 cut(s) 116, 208
FokI GGATG 1 cut(s) 174
FriOI GRGCYC 1 cut(s) 441
Fsp4HI GCNGC 2 cut(s) 116, 208
GluI GCNGC 2 cut(s) 116, 208
GsaI CCCAGC 1 cut(s) 376
HaeIII GGCC 1 cut(s) 210
HapII CCGG 2 cut(s) 158, 211
HgaI GACGC 1 cut(s) 21
Hin1I GRCGYC 1 cut(s) 13
Hin1II CATG 3 cut(s) 189, 308, 449
HinfI GANTC 4 cut(s) 38, 319, 390, 413
HpaII CCGG 2 cut(s) 158, 211
Hpy166II GTNNAC 4 cut(s) 11, 32, 55, 401
Hpy188I TCNGA 6 cut(s) 85, 94, 109, 135, 278, 418
Hpy188III TCNNGA 1 cut(s) 446
Hpy8I GTNNAC 4 cut(s) 11, 32, 55, 401
HpyAV CCTTC 2 cut(s) 89, 497
HpyCH4III ACNGT 1 cut(s) 405
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 4 cut(s) 44, 185, 202, 316
HpyF10VI GCNNNNNNNGC 2 cut(s) 148, 308
HpyF3I CTNAG 2 cut(s) 106, 297
HpySE526I ACGT 1 cut(s) 78
Hsp92I GRCGYC 1 cut(s) 13
Hsp92II CATG 3 cut(s) 189, 308, 449
KflI GGGWCCC 1 cut(s) 154
Kzo9I GATC 2 cut(s) 85, 166
LmnI GCTCC 3 cut(s) 381, 436, 494
MaeII ACGT 1 cut(s) 78
MalI GATC 2 cut(s) 87, 168
MbiI CCGCTC 1 cut(s) 207
MboI GATC 2 cut(s) 85, 166
MboII GAAGA 1 cut(s) 344
MfeI CAATTG 1 cut(s) 234
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 3 cut(s) 229, 234, 339
MlyI GAGTC 1 cut(s) 328
MnlI CCTC 2 cut(s) 292, 475
MroXI GAANNNNTTC 1 cut(s) 79
MseI TTAA 1 cut(s) 367
MspI CCGG 2 cut(s) 158, 211
MspR9I CCNGG 5 cut(s) 59, 68, 158, 159, 212
MunI CAATTG 1 cut(s) 234
Mva1269I GAATGC 1 cut(s) 44
MvaI CCWGG 2 cut(s) 59, 68
MwoI GCNNNNNNNGC 2 cut(s) 148, 308
NciI CCSGG 3 cut(s) 158, 159, 212
NdeI CATATG 1 cut(s) 432
NdeII GATC 2 cut(s) 85, 166
NlaIII CATG 3 cut(s) 189, 308, 449
NlaIV GGNNCC 4 cut(s) 155, 156, 346, 490
NspI RCATGY 1 cut(s) 308
PagI TCATGA 1 cut(s) 445
PciI ACATGT 1 cut(s) 304
PctI GAATGC 1 cut(s) 44
PdmI GAANNNNTTC 1 cut(s) 79
PfeI GAWTC 3 cut(s) 38, 390, 413
PkrI GCNGC 2 cut(s) 117, 209
PleI GAGTC 1 cut(s) 327
PpsI GAGTC 1 cut(s) 327
PpuMI RGGWCCY 1 cut(s) 154
PscI ACATGT 1 cut(s) 304
Psp124BI GAGCTC 1 cut(s) 441
Psp1406I AACGTT 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 154
Psp6I CCWGG 2 cut(s) 57, 66
PspFI CCCAGC 1 cut(s) 372
PspGI CCWGG 2 cut(s) 57, 66
PspN4I GGNNCC 4 cut(s) 155, 156, 346, 490
PspPI GGNCC 2 cut(s) 55, 154
PspPPI RGGWCCY 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 282
PsuI RGATCY 1 cut(s) 166
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SacI GAGCTC 1 cut(s) 441
SaqAI TTAA 1 cut(s) 367
SatI GCNGC 2 cut(s) 116, 208
Sau3AI GATC 2 cut(s) 85, 166
Sau96I GGNCC 2 cut(s) 55, 154
SchI GAGTC 1 cut(s) 328
ScrFI CCNGG 5 cut(s) 59, 68, 158, 159, 212
SduI GDGCHC 1 cut(s) 441
SetI ASST 6 cut(s) 22, 72, 81, 378, 441, 483
SinI GGWCC 2 cut(s) 55, 154
SmaI CCCGGG 1 cut(s) 159
Sse9I AATT 3 cut(s) 229, 234, 339
SsiI CCGC 6 cut(s) 27, 99, 115, 118, 151, 207
SstI GAGCTC 1 cut(s) 441
StyD4I CCNGG 5 cut(s) 57, 66, 156, 157, 210
StyI CCWWGG 2 cut(s) 16, 379
TaaI ACNGT 1 cut(s) 405
TaiI ACGT 1 cut(s) 81
TasI AATT 3 cut(s) 229, 234, 339
TauI GCSGC 2 cut(s) 118, 210
TfiI GAWTC 3 cut(s) 38, 390, 413
Tru1I TTAA 1 cut(s) 367
Tru9I TTAA 1 cut(s) 367
TscAI CASTG 2 cut(s) 287, 521
TspDTI ATGAA 2 cut(s) 434, 462
TspGWI ACGGA 1 cut(s) 19
TspMI CCCGGG 1 cut(s) 157
TspRI CASTG 2 cut(s) 287, 521
VpaK11BI GGWCC 2 cut(s) 55, 154
XapI RAATTY 1 cut(s) 229
XceI RCATGY 1 cut(s) 308
XmaI CCCGGG 1 cut(s) 157
XmiI GTMKAC 1 cut(s) 10
XmnI GAANNNNTTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.