Rh4CG432500

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0010041
Physical Location & Seq
Forward (+)
67221790 .. 67222937
1148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG432500.1

Sequence Viewer

Length: 840 bp
ATGAGATTGGTTAGGTTGGAAGAAGATAGTATAGAGCATGAGTTTACCAAGAAGATGTTCGCCGTCGGGATGGAGTCGAACGGAGTAGACGCCAAGGTTGTGGCGGTTCACAAGAATCTGCATTCTGGGTGGACCAGGCGAGCCAGGTGCGAAACGTTTCTCATCTTTCAGAAGGCGGTGGCTCAGAACTGCGGCGGAAACGCCAATATCGGATACGGCTGGTACGGCGGGTCCCGGGATGAGATCTGCGATATACTGTTGCATGGGTTTAGTGGGTGCAGAGCGGCCGGGTCTCACGGGGTTGGAATTCAATTGTTTGCTAATAACTATTCTTTTGATGGTGCAATATCATCAGACACTGATGAGAATGGGCTGAGGCACATGTTGCTGTGCAGAGTCATATTGGGGAAGAGAGAATTGGTGCCTGCTGGTTCAAACCAAGTTAATCCCAGTTCCAAGGAGTTTGATTCTGGTGTCGACAGTCTTGTGAATCCGAAAAGATTTATCATATGGAGCTCTTTCATGAACTCTCATATTATGCCTCTTTTTGTTGTCAGCTTCAAGGCTCCTGCTAACTTGAAGGATATTCCAAGGAGCATTCAGGCGAGTGCTGCTGCTGTAAGACCACCACCCAAGTCGGCTTGGGTGAATCTCACTGCTATGATGAACGCCCTCGCTAAGGTCTTGCCTCCTCCTAGAATGGTTCTGCTTTCCAAATCCGCTGACGATTTCAGGGCGAAGAAGATTACTAGACCTCAGCTGATTAGAAGAGTGAGAACTCTAGCAGGCGACAAATTGCTGGTTTCGGTGGTCAAAAACTTTAACAAGGAGCGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

279

Amino Acids

30.83

Weight (kDa)

9.76

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 211 - 274 8.7e-18 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23550 AT1G70440 AT1G70440
fragaria_vesca FvH4_4g34350
malus_domestica MD13G1092800.v1.1 MD16G1093700.v1.1
prunus_persica Prupe.1G252800_v2.0.a1
pyrus_communis pycom13g08070 pycom13g08080 pycom16g07970
rosa_chinensis RchiOBHm_Chr4g0443761
rosa_laevigata RLG00000005892
rosa_multiflora Rmu_co8242545.1_g000001 Rmu_sc0042927.1_g000001
rosa_roxburghii Rroxscaffold_5G00384330
rosa_rugosa Rorug04G0347100
rosa_samantha Rh4AG407300 Rh4BG418200 Rh4CG432500 Rh4DG413500
rosa_wichuraiana Rw4G034980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 421
AccBSI CCGCTC 2 cut(s) 284, 832
AccI GTMKAC 2 cut(s) 87, 477
AciI CCGC 8 cut(s) 104, 176, 192, 195, 228, 284, 720, 832
AclI AACGTT 1 cut(s) 155
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 1 cut(s) 306
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 679
AflIII ACRYGT 1 cut(s) 381
AgsI TTSAA 4 cut(s) 311, 435, 562, 580
AjnI CCWGG 2 cut(s) 134, 143
AjuI GAANNNNNNNTTGG 4 cut(s) 41, 73, 401, 433
AluBI AGCT 3 cut(s) 516, 558, 760
AluI AGCT 3 cut(s) 516, 558, 760
Alw21I GWGCWC 1 cut(s) 518
Alw26I GTCTC 1 cut(s) 297
AlwNI CAGNNNCTG 1 cut(s) 359
Ama87I CYCGRG 1 cut(s) 234
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 2 cut(s) 611, 614
ApoI RAATTY 1 cut(s) 306
Asp700I GAANNNNTTC 2 cut(s) 56, 156
AspS9I GGNCC 2 cut(s) 132, 231
AsuC2I CCSGG 3 cut(s) 235, 236, 289
AsuHPI GGTGA 1 cut(s) 658
AvaI CYCGRG 1 cut(s) 234
AvaII GGWCC 2 cut(s) 132, 231
BanI GGYRCC 1 cut(s) 421
BanII GRGCYC 1 cut(s) 518
Bbv12I GWGCWC 1 cut(s) 518
BbvCI CCTCAGC 2 cut(s) 374, 756
BbvI GCAGC 2 cut(s) 598, 601
BccI CCATC 2 cut(s) 64, 332
BceAI ACGGC 3 cut(s) 47, 232, 241
BcgI CGANNNNNNTGC 2 cut(s) 129, 163
BciT130I CCWGG 2 cut(s) 136, 145
BciVI GTATCC 1 cut(s) 206
BcnI CCSGG 3 cut(s) 235, 236, 289
BcoDI GTCTC 1 cut(s) 297
BfaI CTAG 3 cut(s) 696, 750, 782
BfuI GTATCC 1 cut(s) 206
BglII AGATCT 1 cut(s) 243
BisI GCNGC 4 cut(s) 193, 285, 612, 615
BlsI GCNGC 4 cut(s) 194, 286, 613, 616
Bme1390I CCNGG 5 cut(s) 136, 145, 235, 236, 289
Bme18I GGWCC 2 cut(s) 132, 231
BmeT110I CYCGRG 1 cut(s) 234
BmgT120I GGNCC 2 cut(s) 132, 231
BmiI GGNNCC 4 cut(s) 232, 233, 423, 567
BmrFI CCNGG 5 cut(s) 136, 145, 235, 236, 289
BmrI ACTGGG 1 cut(s) 444
BmuI ACTGGG 1 cut(s) 444
Bpu10I CCTNAGC 3 cut(s) 374, 678, 756
BpuMI CCSGG 3 cut(s) 235, 236, 289
BsaHI GRCGYC 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 297
BsaJI CCNNGG 4 cut(s) 93, 234, 456, 590
BsaXI ACNNNNNCTCC 1 cut(s) 821
Bsc4I CCNNNNNNNGG 1 cut(s) 679
Bse1I ACTGG 1 cut(s) 450
BseBI CCWGG 2 cut(s) 136, 145
BseDI CCNNGG 4 cut(s) 93, 234, 456, 590
BseGI GGATG 2 cut(s) 75, 244
BseLI CCNNNNNNNGG 1 cut(s) 679
BseMII CTCAG 3 cut(s) 197, 365, 770
BseNI ACTGG 1 cut(s) 450
BseRI GAGGAG 1 cut(s) 681
BseX3I CGGCCG 1 cut(s) 285
BseXI GCAGC 2 cut(s) 598, 601
BsgI GTGCAG 2 cut(s) 298, 412
Bsh1285I CGRYCG 1 cut(s) 288
BshFI GGCC 1 cut(s) 287
BshNI GGYRCC 1 cut(s) 421
BsiEI CGRYCG 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 518
BsiHKCI CYCGRG 1 cut(s) 234
BsiSI CCGG 2 cut(s) 235, 288
BslFI GGGAC 1 cut(s) 217
BslI CCNNNNNNNGG 1 cut(s) 679
BsmAI GTCTC 1 cut(s) 297
BsmFI GGGAC 1 cut(s) 217
BsmI GAATGC 2 cut(s) 121, 597
BsnI GGCC 1 cut(s) 287
Bso31I GGTCTC 1 cut(s) 297
BsoBI CYCGRG 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 518
Bsp143I GATC 1 cut(s) 243
BspACI CCGC 8 cut(s) 104, 176, 192, 195, 228, 284, 720, 832
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 3 cut(s) 196, 366, 769
BspHI TCATGA 1 cut(s) 522
BspLI GGNNCC 4 cut(s) 232, 233, 423, 567
BspT107I GGYRCC 1 cut(s) 421
BspTNI GGTCTC 1 cut(s) 297
BsrBI CCGCTC 2 cut(s) 284, 832
BsrI ACTGG 1 cut(s) 450
BssECI CCNNGG 4 cut(s) 93, 234, 456, 590
BssMI GATC 1 cut(s) 243
BssNI GRCGYC 1 cut(s) 90
BssT1I CCWWGG 3 cut(s) 93, 456, 590
Bst2UI CCWGG 2 cut(s) 136, 145
Bst4CI ACNGT 2 cut(s) 258, 482
Bst6I CTCTTC 2 cut(s) 404, 763
BstACI GRCGYC 1 cut(s) 90
BstAPI GCANNNNNTGC 1 cut(s) 385
BstC8I GCNNGC 3 cut(s) 141, 426, 787
BstDEI CTNAG 4 cut(s) 183, 374, 678, 756
BstENI CCTNNNNNAGG 1 cut(s) 677
BstF5I GGATG 2 cut(s) 75, 244
BstKTI GATC 1 cut(s) 246
BstMAI GTCTC 1 cut(s) 297
BstMBI GATC 1 cut(s) 243
BstMCI CGRYCG 1 cut(s) 288
BstMWI GCNNNNNNNGC 3 cut(s) 225, 385, 611
BstNI CCWGG 2 cut(s) 136, 145
BstNSI RCATGY 1 cut(s) 385
BstSCI CCNGG 5 cut(s) 134, 143, 233, 234, 287
BstV1I GCAGC 2 cut(s) 598, 601
BstX2I RGATCY 1 cut(s) 243
BstXI CCANNNNNNTGG 1 cut(s) 100
BstYI RGATCY 1 cut(s) 243
BstZI CGGCCG 1 cut(s) 285
BsuI GTATCC 1 cut(s) 206
BsuRI GGCC 1 cut(s) 287
BtsCI GGATG 2 cut(s) 75, 244
BtsI GCAGTG 1 cut(s) 654
BtsIMutI CAGTG 2 cut(s) 357, 654
Cac8I GCNNGC 3 cut(s) 141, 426, 787
CaiI CAGNNNCTG 1 cut(s) 359
CciI TCATGA 1 cut(s) 522
Cfr13I GGNCC 2 cut(s) 132, 231
Cfr9I CCCGGG 1 cut(s) 234
CseI GACGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 223
CviAII CATG 4 cut(s) 38, 263, 382, 523
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 4 cut(s) 183, 374, 678, 756
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
EaeI YGGCCR 1 cut(s) 285
EagI CGGCCG 1 cut(s) 285
Eam1104I CTCTTC 2 cut(s) 404, 763
EarI CTCTTC 2 cut(s) 404, 763
EciI GGCGGA 1 cut(s) 210
Ecl136II GAGCTC 1 cut(s) 516
EclXI CGGCCG 1 cut(s) 285
Eco130I CCWWGG 3 cut(s) 93, 456, 590
Eco24I GRGCYC 1 cut(s) 518
Eco31I GGTCTC 1 cut(s) 297
Eco47I GGWCC 2 cut(s) 132, 231
Eco52I CGGCCG 1 cut(s) 285
Eco53kI GAGCTC 1 cut(s) 516
Eco88I CYCGRG 1 cut(s) 234
EcoICRI GAGCTC 1 cut(s) 516
EcoNI CCTNNNNNAGG 1 cut(s) 677
EcoO109I RGGNCCY 1 cut(s) 231
EcoRI GAATTC 1 cut(s) 306
EcoRII CCWGG 2 cut(s) 134, 143
EcoT14I CCWWGG 3 cut(s) 93, 456, 590
EcoT38I GRGCYC 1 cut(s) 518
ErhI CCWWGG 3 cut(s) 93, 456, 590
FaeI CATG 4 cut(s) 41, 266, 385, 526
FaqI GGGAC 1 cut(s) 217
FatI CATG 4 cut(s) 37, 262, 381, 522
FauI CCCGC 2 cut(s) 221, 825
FauNDI CATATG 1 cut(s) 509
FblI GTMKAC 2 cut(s) 87, 477
Fnu4HI GCNGC 4 cut(s) 193, 285, 612, 615
FokI GGATG 2 cut(s) 82, 251
FriOI GRGCYC 1 cut(s) 518
Fsp4HI GCNGC 4 cut(s) 193, 285, 612, 615
FspBI CTAG 3 cut(s) 696, 750, 782
GluI GCNGC 4 cut(s) 193, 285, 612, 615
HaeIII GGCC 1 cut(s) 287
HapII CCGG 2 cut(s) 235, 288
HgaI GACGC 1 cut(s) 98
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 4 cut(s) 41, 266, 385, 526
HincII GTYRAC 1 cut(s) 478
HindII GTYRAC 1 cut(s) 478
HinfI GANTC 6 cut(s) 74, 115, 396, 467, 490, 649
HpaII CCGG 2 cut(s) 235, 288
HphI GGTGA 1 cut(s) 658
Hpy166II GTNNAC 5 cut(s) 45, 88, 109, 132, 478
Hpy188I TCNGA 5 cut(s) 171, 186, 212, 355, 495
Hpy188III TCNNGA 2 cut(s) 67, 523
Hpy8I GTNNAC 5 cut(s) 45, 88, 109, 132, 478
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 2 cut(s) 166, 574
HpyCH4III ACNGT 2 cut(s) 258, 482
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 5 cut(s) 121, 262, 279, 344, 393
HpyF10VI GCNNNNNNNGC 3 cut(s) 225, 385, 611
HpyF3I CTNAG 4 cut(s) 183, 374, 678, 756
HpySE526I ACGT 1 cut(s) 155
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 4 cut(s) 41, 266, 385, 526
KflI GGGWCCC 1 cut(s) 231
Kzo9I GATC 1 cut(s) 243
LmnI GCTCC 4 cut(s) 513, 571, 594, 829
Lsp1109I GCAGC 2 cut(s) 598, 601
MaeI CTAG 3 cut(s) 696, 750, 782
MaeII ACGT 1 cut(s) 155
MalI GATC 1 cut(s) 245
MbiI CCGCTC 2 cut(s) 284, 832
MboI GATC 1 cut(s) 243
MboII GAAGA 7 cut(s) 32, 35, 64, 421, 751, 754, 780
MfeI CAATTG 1 cut(s) 311
MflI RGATCY 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 518
MluCI AATT 4 cut(s) 306, 311, 416, 794
MlyI GAGTC 2 cut(s) 83, 405
MmeI TCCRAC 1 cut(s) 283
MnlI CCTC 6 cut(s) 369, 552, 683, 699, 702, 765
MroXI GAANNNNTTC 2 cut(s) 56, 156
MseI TTAA 2 cut(s) 444, 822
MslI CAYNNNNRTG 1 cut(s) 659
MspA1I CMGCKG 2 cut(s) 722, 760
MspI CCGG 2 cut(s) 235, 288
MspR9I CCNGG 5 cut(s) 136, 145, 235, 236, 289
MunI CAATTG 1 cut(s) 311
Mva1269I GAATGC 2 cut(s) 121, 597
MvaI CCWGG 2 cut(s) 136, 145
MwoI GCNNNNNNNGC 3 cut(s) 225, 385, 611
NciI CCSGG 3 cut(s) 235, 236, 289
NdeI CATATG 1 cut(s) 509
NdeII GATC 1 cut(s) 243
NlaIII CATG 4 cut(s) 41, 266, 385, 526
NlaIV GGNNCC 4 cut(s) 232, 233, 423, 567
NspI RCATGY 1 cut(s) 385
PagI TCATGA 1 cut(s) 522
PciI ACATGT 1 cut(s) 381
PctI GAATGC 2 cut(s) 121, 597
PdmI GAANNNNTTC 2 cut(s) 56, 156
PfeI GAWTC 4 cut(s) 115, 467, 490, 649
PkrI GCNGC 4 cut(s) 194, 286, 613, 616
PleI GAGTC 2 cut(s) 82, 404
PpsI GAGTC 2 cut(s) 82, 404
PpuMI RGGWCCY 1 cut(s) 231
PscI ACATGT 1 cut(s) 381
Psp124BI GAGCTC 1 cut(s) 518
Psp1406I AACGTT 1 cut(s) 155
Psp5II RGGWCCY 1 cut(s) 231
Psp6I CCWGG 2 cut(s) 134, 143
PspGI CCWGG 2 cut(s) 134, 143
PspN4I GGNNCC 4 cut(s) 232, 233, 423, 567
PspPI GGNCC 2 cut(s) 132, 231
PspPPI RGGWCCY 1 cut(s) 231
PstNI CAGNNNCTG 1 cut(s) 359
PsuI RGATCY 1 cut(s) 243
PvuII CAGCTG 1 cut(s) 760
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 659
SacI GAGCTC 1 cut(s) 518
SalI GTCGAC 1 cut(s) 476
SaqAI TTAA 2 cut(s) 444, 822
SatI GCNGC 4 cut(s) 193, 285, 612, 615
Sau3AI GATC 1 cut(s) 243
Sau96I GGNCC 2 cut(s) 132, 231
SchI GAGTC 2 cut(s) 83, 405
ScrFI CCNGG 5 cut(s) 136, 145, 235, 236, 289
SduI GDGCHC 1 cut(s) 518
SetI ASST 9 cut(s) 17, 99, 149, 158, 518, 560, 684, 757, 762
SinI GGWCC 2 cut(s) 132, 231
SmaI CCCGGG 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 659
Sse9I AATT 4 cut(s) 306, 311, 416, 794
SsiI CCGC 8 cut(s) 104, 176, 192, 195, 228, 284, 720, 832
SspMI CTAG 3 cut(s) 696, 750, 782
SstI GAGCTC 1 cut(s) 518
StyD4I CCNGG 5 cut(s) 134, 143, 233, 234, 287
StyI CCWWGG 3 cut(s) 93, 456, 590
TaaI ACNGT 2 cut(s) 258, 482
TaiI ACGT 1 cut(s) 158
TaqI TCGA 2 cut(s) 77, 477
TasI AATT 4 cut(s) 306, 311, 416, 794
TauI GCSGC 2 cut(s) 195, 287
TfiI GAWTC 4 cut(s) 115, 467, 490, 649
Tru1I TTAA 2 cut(s) 444, 822
Tru9I TTAA 2 cut(s) 444, 822
TscAI CASTG 2 cut(s) 364, 661
TseI GCWGC 2 cut(s) 611, 614
TspDTI ATGAA 3 cut(s) 511, 539, 680
TspGWI ACGGA 1 cut(s) 96
TspMI CCCGGG 1 cut(s) 234
TspRI CASTG 2 cut(s) 364, 661
VpaK11BI GGWCC 2 cut(s) 132, 231
XagI CCTNNNNNAGG 1 cut(s) 677
XapI RAATTY 1 cut(s) 306
XceI RCATGY 1 cut(s) 385
XmaI CCCGGG 1 cut(s) 234
XmiI GTMKAC 2 cut(s) 87, 477
XmnI GAANNNNTTC 2 cut(s) 56, 156
XspI CTAG 3 cut(s) 696, 750, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.