Rmu_sc0042927.1_g000001

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042927.1
OG0010041
Physical Location & Seq
Forward (+)
5974 .. 7264
1291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042927.1_g000001.1.cds

Sequence Viewer

Length: 960 bp
atggaaccgattagcgagtaccaagcctccatgattgttgatgatgacgaaaaaagccacgattccgggtcggactgctccagatcggttgtttcggatcggttcgaggttttcactgggatgagattggttaggttggaagaagatagtatagagcatgagtttaccaagaagatgttcgccgtggggatggagtcgaacggagtagacgccaaggttgtggcggttcacaagaatctgcattctgggtggaccaggcgagccaggtgcgaaacgtttctgatctttcagaaggcggtggctcagaaatgcggcggaaacgccaatatcggatacggctggtacggcgggtcccgggatgagatctgtgatatcctgttgcatgggtttagtgggtgcagagcggccgggtctcacgggcttggaattcaattgtttgctaataactattcttttgatggtgctatatcatcagacactgatgagaatgggctgaggcacatgttgctgtgcagagtcatattggggaagagagaattggtgcctgctggttcaaaccaagttaatcccagctccaaggagtttgattctggtgtggacagtcttgtgaatccgaaaagatttatcatatggagctctttcatgaactctcatattatgcctctttttgttgtcagcttcaaggctcctgctaacttgaaggatattccaaggagcattcaggcgagtgctgctgctgtaagaccaccacccaagtcggcttgggtgaatctcactgctatgatgaacgccctcgctaaggtcttgcctcctcctagaatggttctgctttccaaatccgctgacgatttcagggcgaagaagattactagacctcagctgattagaagagtgagaactctagcaggcgacaaattgctggtttcggtggtcaaaaactttaacaaggagcgggagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

319

Amino Acids

35.29

Weight (kDa)

9.1

Isoelectric Point (pI)

37.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23550 AT1G70440 AT1G70440
fragaria_vesca FvH4_4g34350
malus_domestica MD13G1092800.v1.1 MD16G1093700.v1.1
prunus_persica Prupe.1G252800_v2.0.a1
pyrus_communis pycom13g08070 pycom13g08080 pycom16g07970
rosa_chinensis RchiOBHm_Chr4g0443761
rosa_laevigata RLG00000005892
rosa_multiflora Rmu_co8242545.1_g000001 Rmu_sc0042927.1_g000001
rosa_roxburghii Rroxscaffold_5G00384330
rosa_rugosa Rorug04G0347100
rosa_samantha Rh4AG407300 Rh4BG418200 Rh4CG432500 Rh4DG413500
rosa_wichuraiana Rw4G034980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 541
AccBSI CCGCTC 2 cut(s) 404, 952
AccI GTMKAC 1 cut(s) 207
AciI CCGC 8 cut(s) 224, 296, 312, 315, 348, 404, 840, 952
AclI AACGTT 1 cut(s) 275
AclWI GGATC 1 cut(s) 105
AcoI YGGCCR 1 cut(s) 405
AcsI RAATTY 1 cut(s) 426
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 2 cut(s) 20, 344
AfiI CCNNNNNNNGG 1 cut(s) 799
AflIII ACRYGT 1 cut(s) 501
AgsI TTSAA 4 cut(s) 431, 555, 682, 700
AjnI CCWGG 2 cut(s) 254, 263
AjuI GAANNNNNNNTTGG 4 cut(s) 161, 193, 521, 553
AluBI AGCT 4 cut(s) 573, 636, 678, 880
AluI AGCT 4 cut(s) 573, 636, 678, 880
Alw21I GWGCWC 1 cut(s) 638
Alw26I GTCTC 1 cut(s) 417
AlwI GGATC 1 cut(s) 105
AlwNI CAGNNNCTG 1 cut(s) 479
Ama87I CYCGRG 1 cut(s) 354
AoxI GGCC 1 cut(s) 405
ApeKI GCWGC 2 cut(s) 731, 734
ApoI RAATTY 1 cut(s) 426
Asp700I GAANNNNTTC 2 cut(s) 176, 276
AspS9I GGNCC 2 cut(s) 252, 351
AsuC2I CCSGG 4 cut(s) 67, 355, 356, 409
AsuHPI GGTGA 1 cut(s) 778
AvaI CYCGRG 1 cut(s) 354
AvaII GGWCC 2 cut(s) 252, 351
BanI GGYRCC 1 cut(s) 541
BanII GRGCYC 1 cut(s) 638
Bbv12I GWGCWC 1 cut(s) 638
BbvCI CCTCAGC 2 cut(s) 494, 876
BbvI GCAGC 2 cut(s) 718, 721
BccI CCATC 2 cut(s) 184, 452
BceAI ACGGC 3 cut(s) 167, 352, 361
BcgI CGANNNNNNTGC 2 cut(s) 249, 283
BciT130I CCWGG 2 cut(s) 256, 265
BciVI GTATCC 1 cut(s) 326
BcnI CCSGG 4 cut(s) 67, 355, 356, 409
BcoDI GTCTC 1 cut(s) 417
BfaI CTAG 3 cut(s) 816, 870, 902
BfuI GTATCC 1 cut(s) 326
BglII AGATCT 1 cut(s) 363
BisI GCNGC 4 cut(s) 313, 405, 732, 735
BlsI GCNGC 4 cut(s) 314, 406, 733, 736
Bme1390I CCNGG 6 cut(s) 67, 256, 265, 355, 356, 409
Bme18I GGWCC 2 cut(s) 252, 351
BmeT110I CYCGRG 1 cut(s) 354
BmgT120I GGNCC 2 cut(s) 252, 351
BmiI GGNNCC 5 cut(s) 6, 352, 353, 543, 687
BmrFI CCNGG 6 cut(s) 67, 256, 265, 355, 356, 409
BmrI ACTGGG 1 cut(s) 126
BmuI ACTGGG 1 cut(s) 126
BpmI CTGGAG 1 cut(s) 64
Bpu10I CCTNAGC 3 cut(s) 494, 798, 876
BpuMI CCSGG 4 cut(s) 67, 355, 356, 409
BsaHI GRCGYC 1 cut(s) 210
BsaI GGTCTC 1 cut(s) 417
BsaJI CCNNGG 5 cut(s) 183, 213, 354, 576, 710
BsaXI ACNNNNNCTCC 3 cut(s) 11, 41, 941
Bsc4I CCNNNNNNNGG 1 cut(s) 799
Bse1I ACTGG 1 cut(s) 121
BseBI CCWGG 2 cut(s) 256, 265
BseDI CCNNGG 5 cut(s) 183, 213, 354, 576, 710
BseGI GGATG 3 cut(s) 126, 195, 364
BseLI CCNNNNNNNGG 1 cut(s) 799
BseMII CTCAG 3 cut(s) 317, 485, 890
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 801
BseX3I CGGCCG 1 cut(s) 405
BseXI GCAGC 2 cut(s) 718, 721
BseYI CCCAGC 1 cut(s) 569
BsgI GTGCAG 2 cut(s) 418, 532
Bsh1285I CGRYCG 1 cut(s) 408
BshFI GGCC 1 cut(s) 407
BshNI GGYRCC 1 cut(s) 541
BsiEI CGRYCG 1 cut(s) 408
BsiHKAI GWGCWC 1 cut(s) 638
BsiHKCI CYCGRG 1 cut(s) 354
BsiSI CCGG 3 cut(s) 66, 355, 408
BslFI GGGAC 1 cut(s) 337
BslI CCNNNNNNNGG 1 cut(s) 799
BsmAI GTCTC 1 cut(s) 417
BsmFI GGGAC 1 cut(s) 337
BsmI GAATGC 2 cut(s) 241, 717
BsnI GGCC 1 cut(s) 407
Bso31I GGTCTC 1 cut(s) 417
BsoBI CYCGRG 1 cut(s) 354
Bsp1286I GDGCHC 1 cut(s) 638
Bsp143I GATC 4 cut(s) 83, 97, 282, 363
BspACI CCGC 8 cut(s) 224, 296, 312, 315, 348, 404, 840, 952
BspANI GGCC 1 cut(s) 407
BspCNI CTCAG 3 cut(s) 316, 486, 889
BspHI TCATGA 1 cut(s) 642
BspLI GGNNCC 5 cut(s) 6, 352, 353, 543, 687
BspPI GGATC 1 cut(s) 105
BspT107I GGYRCC 1 cut(s) 541
BspTNI GGTCTC 1 cut(s) 417
BsrBI CCGCTC 2 cut(s) 404, 952
BsrI ACTGG 1 cut(s) 121
BssECI CCNNGG 5 cut(s) 183, 213, 354, 576, 710
BssMI GATC 4 cut(s) 83, 97, 282, 363
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 3 cut(s) 213, 576, 710
Bst2UI CCWGG 2 cut(s) 256, 265
Bst4CI ACNGT 1 cut(s) 602
Bst6I CTCTTC 2 cut(s) 524, 883
BstACI GRCGYC 1 cut(s) 210
BstAPI GCANNNNNTGC 1 cut(s) 505
BstC8I GCNNGC 3 cut(s) 261, 546, 907
BstDEI CTNAG 4 cut(s) 303, 494, 798, 876
BstDSI CCRYGG 1 cut(s) 183
BstENI CCTNNNNNAGG 1 cut(s) 797
BstF5I GGATG 3 cut(s) 126, 195, 364
BstKTI GATC 4 cut(s) 86, 100, 285, 366
BstMAI GTCTC 1 cut(s) 417
BstMBI GATC 4 cut(s) 83, 97, 282, 363
BstMCI CGRYCG 1 cut(s) 408
BstMWI GCNNNNNNNGC 3 cut(s) 345, 505, 731
BstNI CCWGG 2 cut(s) 256, 265
BstNSI RCATGY 1 cut(s) 505
BstSCI CCNGG 6 cut(s) 65, 254, 263, 353, 354, 407
BstV1I GCAGC 2 cut(s) 718, 721
BstX2I RGATCY 1 cut(s) 363
BstXI CCANNNNNNTGG 1 cut(s) 220
BstYI RGATCY 1 cut(s) 363
BstZI CGGCCG 1 cut(s) 405
BsuI GTATCC 1 cut(s) 326
BsuRI GGCC 1 cut(s) 407
BtgI CCRYGG 1 cut(s) 183
BtsCI GGATG 3 cut(s) 126, 195, 364
BtsI GCAGTG 1 cut(s) 774
BtsIMutI CAGTG 3 cut(s) 114, 477, 774
Cac8I GCNNGC 3 cut(s) 261, 546, 907
CaiI CAGNNNCTG 1 cut(s) 479
CciI TCATGA 1 cut(s) 642
Cfr13I GGNCC 2 cut(s) 252, 351
Cfr9I CCCGGG 1 cut(s) 354
CseI GACGC 1 cut(s) 218
Csp6I GTAC 2 cut(s) 19, 343
CviAII CATG 5 cut(s) 31, 158, 383, 502, 643
CviQI GTAC 2 cut(s) 19, 343
DdeI CTNAG 4 cut(s) 303, 494, 798, 876
DpnI GATC 4 cut(s) 85, 99, 284, 365
DpnII GATC 4 cut(s) 83, 97, 282, 363
EaeI YGGCCR 1 cut(s) 405
EagI CGGCCG 1 cut(s) 405
Eam1104I CTCTTC 2 cut(s) 524, 883
EarI CTCTTC 2 cut(s) 524, 883
EciI GGCGGA 1 cut(s) 330
Ecl136II GAGCTC 1 cut(s) 636
EclXI CGGCCG 1 cut(s) 405
Eco130I CCWWGG 3 cut(s) 213, 576, 710
Eco24I GRGCYC 1 cut(s) 638
Eco31I GGTCTC 1 cut(s) 417
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 2 cut(s) 252, 351
Eco52I CGGCCG 1 cut(s) 405
Eco53kI GAGCTC 1 cut(s) 636
Eco88I CYCGRG 1 cut(s) 354
EcoICRI GAGCTC 1 cut(s) 636
EcoNI CCTNNNNNAGG 1 cut(s) 797
EcoO109I RGGNCCY 1 cut(s) 351
EcoRI GAATTC 1 cut(s) 426
EcoRII CCWGG 2 cut(s) 254, 263
EcoRV GATATC 1 cut(s) 373
EcoT14I CCWWGG 3 cut(s) 213, 576, 710
EcoT38I GRGCYC 1 cut(s) 638
ErhI CCWWGG 3 cut(s) 213, 576, 710
FaeI CATG 5 cut(s) 34, 161, 386, 505, 646
FaqI GGGAC 1 cut(s) 337
FatI CATG 5 cut(s) 30, 157, 382, 501, 642
FauI CCCGC 2 cut(s) 341, 945
FauNDI CATATG 1 cut(s) 629
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 4 cut(s) 313, 405, 732, 735
FokI GGATG 3 cut(s) 133, 202, 371
FriOI GRGCYC 1 cut(s) 638
Fsp4HI GCNGC 4 cut(s) 313, 405, 732, 735
FspBI CTAG 3 cut(s) 816, 870, 902
GluI GCNGC 4 cut(s) 313, 405, 732, 735
GsaI CCCAGC 1 cut(s) 573
GsuI CTGGAG 1 cut(s) 64
HaeIII GGCC 1 cut(s) 407
HapII CCGG 3 cut(s) 66, 355, 408
HgaI GACGC 1 cut(s) 218
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 5 cut(s) 34, 161, 386, 505, 646
HinfI GANTC 7 cut(s) 62, 194, 235, 516, 587, 610, 769
HpaII CCGG 3 cut(s) 66, 355, 408
HphI GGTGA 1 cut(s) 778
Hpy166II GTNNAC 5 cut(s) 165, 208, 229, 252, 598
Hpy188I TCNGA 8 cut(s) 73, 97, 282, 291, 306, 332, 475, 615
Hpy188III TCNNGA 2 cut(s) 81, 643
Hpy8I GTNNAC 5 cut(s) 165, 208, 229, 252, 598
HpyAV CCTTC 2 cut(s) 286, 694
HpyCH4III ACNGT 1 cut(s) 602
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 4 cut(s) 241, 382, 399, 513
HpyF10VI GCNNNNNNNGC 3 cut(s) 345, 505, 731
HpyF3I CTNAG 4 cut(s) 303, 494, 798, 876
HpySE526I ACGT 1 cut(s) 275
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 5 cut(s) 34, 161, 386, 505, 646
KflI GGGWCCC 1 cut(s) 351
Kzo9I GATC 4 cut(s) 83, 97, 282, 363
LmnI GCTCC 6 cut(s) 83, 578, 633, 691, 714, 949
Lsp1109I GCAGC 2 cut(s) 718, 721
MaeI CTAG 3 cut(s) 816, 870, 902
MaeII ACGT 1 cut(s) 275
MalI GATC 4 cut(s) 85, 99, 284, 365
MbiI CCGCTC 2 cut(s) 404, 952
MboI GATC 4 cut(s) 83, 97, 282, 363
MboII GAAGA 7 cut(s) 152, 155, 184, 541, 871, 874, 900
MfeI CAATTG 1 cut(s) 431
MflI RGATCY 1 cut(s) 363
MhlI GDGCHC 1 cut(s) 638
MluCI AATT 4 cut(s) 426, 431, 536, 914
MlyI GAGTC 2 cut(s) 203, 525
MmeI TCCRAC 2 cut(s) 51, 117
MnlI CCTC 8 cut(s) 37, 100, 489, 672, 803, 819, 822, 885
MroXI GAANNNNTTC 2 cut(s) 176, 276
MseI TTAA 2 cut(s) 564, 942
MslI CAYNNNNRTG 2 cut(s) 119, 779
MspA1I CMGCKG 2 cut(s) 842, 880
MspI CCGG 3 cut(s) 66, 355, 408
MspR9I CCNGG 6 cut(s) 67, 256, 265, 355, 356, 409
MunI CAATTG 1 cut(s) 431
Mva1269I GAATGC 2 cut(s) 241, 717
MvaI CCWGG 2 cut(s) 256, 265
MwoI GCNNNNNNNGC 3 cut(s) 345, 505, 731
NciI CCSGG 4 cut(s) 67, 355, 356, 409
NdeI CATATG 1 cut(s) 629
NdeII GATC 4 cut(s) 83, 97, 282, 363
NlaIII CATG 5 cut(s) 34, 161, 386, 505, 646
NlaIV GGNNCC 5 cut(s) 6, 352, 353, 543, 687
NspI RCATGY 1 cut(s) 505
PagI TCATGA 1 cut(s) 642
PciI ACATGT 1 cut(s) 501
PctI GAATGC 2 cut(s) 241, 717
PdmI GAANNNNTTC 2 cut(s) 176, 276
PfeI GAWTC 5 cut(s) 62, 235, 587, 610, 769
PkrI GCNGC 4 cut(s) 314, 406, 733, 736
PleI GAGTC 2 cut(s) 202, 524
PpsI GAGTC 2 cut(s) 202, 524
PpuMI RGGWCCY 1 cut(s) 351
PscI ACATGT 1 cut(s) 501
Psp124BI GAGCTC 1 cut(s) 638
Psp1406I AACGTT 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 351
Psp6I CCWGG 2 cut(s) 254, 263
PspFI CCCAGC 1 cut(s) 569
PspGI CCWGG 2 cut(s) 254, 263
PspN4I GGNNCC 5 cut(s) 6, 352, 353, 543, 687
PspPI GGNCC 2 cut(s) 252, 351
PspPPI RGGWCCY 1 cut(s) 351
PstNI CAGNNNCTG 1 cut(s) 479
PsuI RGATCY 1 cut(s) 363
PvuII CAGCTG 1 cut(s) 880
RsaI GTAC 2 cut(s) 20, 344
RsaNI GTAC 2 cut(s) 19, 343
RseI CAYNNNNRTG 2 cut(s) 119, 779
SacI GAGCTC 1 cut(s) 638
SaqAI TTAA 2 cut(s) 564, 942
SatI GCNGC 4 cut(s) 313, 405, 732, 735
Sau3AI GATC 4 cut(s) 83, 97, 282, 363
Sau96I GGNCC 2 cut(s) 252, 351
SchI GAGTC 2 cut(s) 203, 525
ScrFI CCNGG 6 cut(s) 67, 256, 265, 355, 356, 409
SduI GDGCHC 1 cut(s) 638
SinI GGWCC 2 cut(s) 252, 351
SmaI CCCGGG 1 cut(s) 356
SmiMI CAYNNNNRTG 2 cut(s) 119, 779
Sse9I AATT 4 cut(s) 426, 431, 536, 914
SsiI CCGC 8 cut(s) 224, 296, 312, 315, 348, 404, 840, 952
SspMI CTAG 3 cut(s) 816, 870, 902
SstI GAGCTC 1 cut(s) 638
StyD4I CCNGG 6 cut(s) 65, 254, 263, 353, 354, 407
StyI CCWWGG 3 cut(s) 213, 576, 710
TaaI ACNGT 1 cut(s) 602
TaiI ACGT 1 cut(s) 278
TaqI TCGA 2 cut(s) 105, 197
TasI AATT 4 cut(s) 426, 431, 536, 914
TauI GCSGC 2 cut(s) 315, 407
TfiI GAWTC 5 cut(s) 62, 235, 587, 610, 769
Tru1I TTAA 2 cut(s) 564, 942
Tru9I TTAA 2 cut(s) 564, 942
TscAI CASTG 3 cut(s) 121, 484, 781
TseI GCWGC 2 cut(s) 731, 734
TspDTI ATGAA 3 cut(s) 631, 659, 800
TspGWI ACGGA 1 cut(s) 216
TspMI CCCGGG 1 cut(s) 354
TspRI CASTG 3 cut(s) 121, 484, 781
VpaK11BI GGWCC 2 cut(s) 252, 351
XagI CCTNNNNNAGG 1 cut(s) 797
XapI RAATTY 1 cut(s) 426
XceI RCATGY 1 cut(s) 505
XmaI CCCGGG 1 cut(s) 354
XmiI GTMKAC 1 cut(s) 207
XmnI GAANNNNTTC 2 cut(s) 176, 276
XspI CTAG 3 cut(s) 816, 870, 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.