pycom13g08070

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0010041
Physical Location & Seq
Reverse (-)
5373451 .. 5374089
639 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g08070.2

Sequence Viewer

Length: 429 bp
ATGGTGTCGCCGGGCTCAAAGCAATCGCAACCGAGCTGCAAGGAGGTGGACAATCTGGTCAATCCGAGAAGATATGTTGTTTGGAGTGCTATCGTGAACTCTCACATTTATCCTTGCTATGTGATCGCTTTCAAGGCTCCTAGCACTCTCCCTAATGTTGTTTCAGGTGTTCCAACTATGCAGCAGAGTGCTTTGAGACCACCCCCAACATCTCCCTGGATGACCTTCCCTGCTCTGATGTCCATTCTCTCGAAGTTCTTGCCTCCTCAGAAAATGCAGTTGCTTGTTGCTTGTCACAACGAATTCAGAGCAAACAAGGTAACGCGCCCGCAGCTGATACAGAGGGTGAGGCAGATTGCCGGTGACAGGCTGTTGATTGGAGTGATCAAATCTGTCAAGAGGCAGATTGGTGCCAGGGCAGATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

143

Amino Acids

15.78

Weight (kDa)

10.58

Isoelectric Point (pI)

73.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23550 AT1G70440 AT1G70440
fragaria_vesca FvH4_4g34350
malus_domestica MD13G1092800.v1.1 MD16G1093700.v1.1
prunus_persica Prupe.1G252800_v2.0.a1
pyrus_communis pycom13g08070 pycom13g08080 pycom16g07970
rosa_chinensis RchiOBHm_Chr4g0443761
rosa_laevigata RLG00000005892
rosa_multiflora Rmu_co8242545.1_g000001 Rmu_sc0042927.1_g000001
rosa_roxburghii Rroxscaffold_5G00384330
rosa_rugosa Rorug04G0347100
rosa_samantha Rh4AG407300 Rh4BG418200 Rh4CG432500 Rh4DG413500
rosa_wichuraiana Rw4G034980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 56
AccB1I GGYRCC 1 cut(s) 410
AccII CGCG 1 cut(s) 325
AciI CCGC 1 cut(s) 329
AcsI RAATTY 1 cut(s) 302
AfiI CCNNNNNNNGG 1 cut(s) 366
AgsI TTSAA 1 cut(s) 133
AjnI CCWGG 2 cut(s) 215, 413
AluBI AGCT 2 cut(s) 36, 334
AluI AGCT 2 cut(s) 36, 334
Alw26I GTCTC 1 cut(s) 190
ApeKI GCWGC 3 cut(s) 36, 181, 331
ApoI RAATTY 1 cut(s) 302
AspLEI GCGC 1 cut(s) 327
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 2 cut(s) 358, 374
BanI GGYRCC 1 cut(s) 410
BanII GRGCYC 1 cut(s) 17
BbvI GCAGC 3 cut(s) 23, 193, 343
BcgI CGANNNNNNTGC 2 cut(s) 241, 275
BciT130I CCWGG 2 cut(s) 217, 415
BclI TGATCA 1 cut(s) 384
BcnI CCSGG 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 1 cut(s) 141
BisI GCNGC 3 cut(s) 37, 182, 332
BlsI GCNGC 3 cut(s) 38, 183, 333
Bme1390I CCNGG 3 cut(s) 12, 217, 415
BmiI GGNNCC 2 cut(s) 138, 412
BmrFI CCNGG 3 cut(s) 12, 217, 415
BmsI GCATC 1 cut(s) 412
BpuMI CCSGG 1 cut(s) 12
BsaI GGTCTC 1 cut(s) 190
BsaJI CCNNGG 2 cut(s) 215, 414
Bsc4I CCNNNNNNNGG 1 cut(s) 366
Bse118I RCCGGY 1 cut(s) 359
BseBI CCWGG 2 cut(s) 217, 415
BseDI CCNNGG 2 cut(s) 215, 414
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 281
BseRI GAGGAG 1 cut(s) 255
BseXI GCAGC 3 cut(s) 23, 193, 343
Bsh1236I CGCG 1 cut(s) 325
BshNI GGYRCC 1 cut(s) 410
BsiSI CCGG 2 cut(s) 11, 360
BslI CCNNNNNNNGG 1 cut(s) 366
BsmAI GTCTC 1 cut(s) 190
Bso31I GGTCTC 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 2 cut(s) 123, 384
BspACI CCGC 1 cut(s) 329
BspCNI CTCAG 1 cut(s) 280
BspFNI CGCG 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 138, 412
BspT107I GGYRCC 1 cut(s) 410
BspTNI GGTCTC 1 cut(s) 190
BsrFI RCCGGY 1 cut(s) 359
BssAI RCCGGY 1 cut(s) 359
BssECI CCNNGG 2 cut(s) 215, 414
BssMI GATC 2 cut(s) 123, 384
Bst2UI CCWGG 2 cut(s) 217, 415
BstC8I GCNNGC 1 cut(s) 329
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 225
BstFNI CGCG 1 cut(s) 325
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 2 cut(s) 126, 387
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 2 cut(s) 123, 384
BstMWI GCNNNNNNNGC 2 cut(s) 134, 331
BstNI CCWGG 2 cut(s) 217, 415
BstSCI CCNGG 3 cut(s) 10, 215, 413
BstUI CGCG 1 cut(s) 325
BstV1I GCAGC 3 cut(s) 23, 193, 343
BtsCI GGATG 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 329
CfoI GCGC 1 cut(s) 327
Cfr10I RCCGGY 1 cut(s) 359
CviJI RGCY 5 cut(s) 15, 36, 137, 334, 370
CviKI_1 RGCY 5 cut(s) 15, 36, 137, 334, 370
DdeI CTNAG 1 cut(s) 267
DpnI GATC 2 cut(s) 125, 386
DpnII GATC 2 cut(s) 123, 384
DrdI GACNNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 302
EcoRII CCWGG 2 cut(s) 215, 413
EcoT22I ATGCAT 1 cut(s) 427
EcoT38I GRGCYC 1 cut(s) 17
FaiI YATR 4 cut(s) 75, 120, 179, 427
FauI CCCGC 1 cut(s) 336
FbaI TGATCA 1 cut(s) 384
Fnu4HI GCNGC 3 cut(s) 37, 182, 332
FokI GGATG 1 cut(s) 232
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 37, 182, 332
FspBI CTAG 1 cut(s) 141
GlaI GCGC 1 cut(s) 326
GluI GCNGC 3 cut(s) 37, 182, 332
HapII CCGG 2 cut(s) 11, 360
HhaI GCGC 1 cut(s) 327
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HpaII CCGG 2 cut(s) 11, 360
HphI GGTGA 2 cut(s) 358, 374
Hpy166II GTNNAC 2 cut(s) 49, 97
Hpy188I TCNGA 4 cut(s) 66, 237, 270, 308
Hpy188III TCNNGA 3 cut(s) 94, 250, 397
Hpy8I GTNNAC 2 cut(s) 49, 97
HpyAV CCTTC 1 cut(s) 235
HpyCH4V TGCA 4 cut(s) 39, 181, 277, 425
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 331
HpyF3I CTNAG 1 cut(s) 267
HspAI GCGC 1 cut(s) 325
Ksp22I TGATCA 1 cut(s) 384
Kzo9I GATC 2 cut(s) 123, 384
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 9 cut(s) 24, 41, 150, 202, 229, 243, 352, 373, 400
Lsp1109I GCAGC 3 cut(s) 23, 193, 343
LweI GCATC 1 cut(s) 412
MaeI CTAG 1 cut(s) 141
MaeIII GTNAC 3 cut(s) 293, 319, 362
MalI GATC 2 cut(s) 125, 386
MboI GATC 2 cut(s) 123, 384
MboII GAAGA 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 6 cut(s) 37, 273, 276, 336, 342, 393
Mph1103I ATGCAT 1 cut(s) 427
MspA1I CMGCKG 1 cut(s) 334
MspI CCGG 2 cut(s) 11, 360
MspR9I CCNGG 3 cut(s) 12, 217, 415
MvaI CCWGG 2 cut(s) 217, 415
MvnI CGCG 1 cut(s) 325
MwoI GCNNNNNNNGC 2 cut(s) 134, 331
NciI CCSGG 1 cut(s) 12
NdeII GATC 2 cut(s) 123, 384
NlaIV GGNNCC 2 cut(s) 138, 412
NmuCI GTSAC 2 cut(s) 293, 362
NsiI ATGCAT 1 cut(s) 427
PkrI GCNGC 3 cut(s) 38, 183, 333
Psp6I CCWGG 2 cut(s) 215, 413
PspGI CCWGG 2 cut(s) 215, 413
PspN4I GGNNCC 2 cut(s) 138, 412
PvuII CAGCTG 1 cut(s) 334
SatI GCNGC 3 cut(s) 37, 182, 332
Sau3AI GATC 2 cut(s) 123, 384
ScrFI CCNGG 3 cut(s) 12, 217, 415
SduI GDGCHC 1 cut(s) 17
SetI ASST 6 cut(s) 38, 48, 169, 227, 321, 336
SfaNI GCATC 1 cut(s) 412
Sse9I AATT 1 cut(s) 302
SsiI CCGC 1 cut(s) 329
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 3 cut(s) 10, 215, 413
TaqI TCGA 1 cut(s) 251
TasI AATT 1 cut(s) 302
TseFI GTSAC 2 cut(s) 293, 362
TseI GCWGC 3 cut(s) 36, 181, 331
Tsp45I GTSAC 2 cut(s) 293, 362
XapI RAATTY 1 cut(s) 302
XcmI CCANNNNNNNNNTGG 1 cut(s) 213
XspI CTAG 1 cut(s) 141
Zsp2I ATGCAT 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.