FvH4_5g01430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013961
Physical Location & Seq
Reverse (-)
892384 .. 896298
3915 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g01430.t1

Sequence Viewer

Length: 1458 bp
ATGGCTTCAGTAACTCCGCCGTGCTCGGAAGTTCAAAGGCCGAGAAAATCAGCTATGATTCATAAGAAGCAGCTGATGCTCAAAGACTACTTGATGGATGATCTGAGCTCCTGCTCCTCCAGCGGCTTCAAAACCTTCCCCCGCCGCCAATGCTGCACAAGCGTCCGATTCCTCCTCGATATCGACCTCAAATCCTCCTCCCGGCCACTACTGCCGCCTCCACGGTCCGTTCACATCCACAACATCGACAACAACTTCAAGAATCAAAATCCAAAGCAACTCCTCCGACGGAGCCGGTCCAGAGCCGCCGCTTCCAACACCCTCTACGCTCTCCAAAGAGCTTCCGGCGCGGTCATTAACGCCGTCAGAAACTTGCAGTTTCACTCCGTCAAGTCCTCCTCGACGTCTGTGCAAAGCAGTGCTCGGAAAGGAGGAATAGTGCTGCTTCTGCCTCGTAGCATTTCAAGGCGGCTGTGGAGGAAAAGCTTTGTGACCAAAGTAGAAGAAGAGAAAGACGTGGGAAGGTGGAGGTCGTTCCGGGAGCTTCTACAGGATCGAGATGAGCCGTCCGATCAGACCACGGCCAGTACAAAAAGTACTGACGGTAAAACCAACAGCGAGAGTTGGGGGGAGAGCGAGTTTAGTTTGAACTCGGAAAGCTCAGTCGGAAACTACGTGGCGGAATGTAAAAGTGGTTCACCAGAAAATAAGAAAGTCAGCGGAAGAGCTGGCGTAACAGCCGGTGAGGATTCCATTGAAACACCAACCACCACCACTACCACCGCTACCTCCACCTGTTCACCTCAAGACGCAAAGGTGTGGATGAATAAAGATGAGGAGAAAGAACAATTTAGTCCCGTGTCAGTGCTCGATTGTCCATTTGAAGACGAAGACGATGAGAGCAGTAGTAGCAGCTCTCCTTTTCGCTGCAGAATTGCTCTGATGGAAGGTACACAGCACAAACTCATGCAGAAGATCAGACGATTCGAGAACCTCGCTCAATTGGAGCCAATCGACTTGGAAAGACGAATGGCAATGTCAGGTGTGGACGATGAAGACGAGCGAGATAACAAGACCGAAGAGAAAGCAGCCGGAGAGATAGTGAAGCAGTTGATCATCAAAACAAGTAGTTCTACCATATTGAGCGATTTCGTGCATATGAAGGCAGATAAATTAGTGGTGGATTTGCTCATTGACAGGAGTGTGAAAACCGGCGAGGAAAATGTGATGGTGGAAGAGGTGTTGAAGGTAGCAGAGGAGTGGGTGAATGGGGAGTCACATATGCTGTCGAGTTGGGAGGTCGAAAATGGTAGACAAGTTTATGTCAATGATATGGACAATAAGTACTGTGGGAAGTGGATGAAATTAGATGAACAAGAACAAGAGGTGGGTTTGGAGTTAGAAGTTGAGGTGTGGAATTCTTTGCTGAATGAGTTCCTGCTTGATCTGGTTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

486

Amino Acids

54.67

Weight (kDa)

5.5

Isoelectric Point (pI)

62.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11780 AT4G23020 AT4G23020
fragaria_vesca FvH4_5g01430
malus_domestica MD04G1068300.v1.1
prunus_persica Prupe.5G089800_v2.0.a1
pyrus_communis pycom04g06170
rosa_chinensis RchiOBHm_Chr7g0199421
rosa_laevigata RLG00000003794
rosa_multiflora Rmu_sc0003890.1_g000015
rosa_roxburghii Rroxscaffold_3G00256740
rosa_rugosa Rorug07G0053800
rosa_samantha Rh7AG178900 Rh7BG182300 Rh7CG187500 Rh7DG181800
rosa_wichuraiana Rw7G015710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 407
AccI GTMKAC 1 cut(s) 1312
AccII CGCG 1 cut(s) 350
AclWI GGATC 1 cut(s) 561
AcoI YGGCCR 2 cut(s) 203, 582
AcsI RAATTY 1 cut(s) 1417
AcyI GRCGYC 1 cut(s) 404
AfaI GTAC 4 cut(s) 589, 598, 952, 1346
AfiI CCNNNNNNNGG 1 cut(s) 201
AgsI TTSAA 8 cut(s) 35, 130, 259, 465, 649, 758, 884, 1246
AjiI CACGTC 1 cut(s) 517
AluBI AGCT 9 cut(s) 53, 73, 108, 341, 486, 544, 660, 728, 915
AluI AGCT 9 cut(s) 53, 73, 108, 341, 486, 544, 660, 728, 915
Alw21I GWGCWC 4 cut(s) 26, 110, 424, 870
AlwI GGATC 1 cut(s) 561
AoxI GGCC 3 cut(s) 38, 203, 582
ApeKI GCWGC 6 cut(s) 70, 153, 442, 912, 927, 1088
ApoI RAATTY 1 cut(s) 1417
Asp700I GAANNNNTTC 1 cut(s) 1433
AspLEI GCGC 1 cut(s) 350
AspS9I GGNCC 2 cut(s) 225, 297
AsuC2I CCSGG 2 cut(s) 202, 539
AsuHPI GGTGA 4 cut(s) 690, 755, 792, 1276
AvaII GGWCC 2 cut(s) 225, 297
BanII GRGCYC 1 cut(s) 110
BbsI GAAGAC 3 cut(s) 891, 897, 1062
Bbv12I GWGCWC 4 cut(s) 26, 110, 424, 870
BbvI GCAGC 6 cut(s) 82, 140, 429, 914, 924, 1100
BccI CCATC 3 cut(s) 88, 937, 1222
BceAI ACGGC 4 cut(s) 4, 347, 550, 597
BcgI CGANNNNNNTGC 2 cut(s) 391, 425
BclI TGATCA 1 cut(s) 1113
BcnI CCSGG 2 cut(s) 202, 539
BfaI CTAG 1 cut(s) 1456
BfmI CTRYAG 2 cut(s) 548, 928
BmcAI AGTACT 2 cut(s) 598, 1346
Bme1390I CCNGG 2 cut(s) 202, 539
Bme18I GGWCC 2 cut(s) 225, 297
BmgBI CACGTC 1 cut(s) 517
BmgT120I GGNCC 2 cut(s) 225, 297
BmiI GGNNCC 2 cut(s) 293, 1008
BmrFI CCNGG 2 cut(s) 202, 539
BmsI GCATC 1 cut(s) 66
BpiI GAAGAC 3 cut(s) 891, 897, 1062
BpmI CTGGAG 1 cut(s) 103
BpuEI CTTGAG 1 cut(s) 789
BpuMI CCSGG 2 cut(s) 202, 539
BsaAI YACGTR 1 cut(s) 676
BsaHI GRCGYC 1 cut(s) 404
BsaJI CCNNGG 2 cut(s) 221, 579
BsaXI ACNNNNNCTCC 6 cut(s) 423, 453, 623, 653, 1086, 1116
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse118I RCCGGY 3 cut(s) 294, 740, 1211
Bse1I ACTGG 1 cut(s) 585
Bse3DI GCAATG 1 cut(s) 1041
BseDI CCNNGG 2 cut(s) 221, 579
BseGI GGATG 4 cut(s) 103, 234, 828, 1365
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 1041
BseMII CTCAG 2 cut(s) 95, 675
BseNI ACTGG 1 cut(s) 585
BseRI GAGGAG 7 cut(s) 106, 164, 187, 272, 388, 851, 1271
BseXI GCAGC 6 cut(s) 82, 140, 429, 914, 924, 1100
BsgI GTGCAG 1 cut(s) 139
Bsh1236I CGCG 1 cut(s) 350
BshFI GGCC 3 cut(s) 40, 205, 584
BsiHKAI GWGCWC 4 cut(s) 26, 110, 424, 870
BsiSI CCGG 7 cut(s) 202, 295, 345, 538, 741, 1092, 1212
BslFI GGGAC 1 cut(s) 840
BslI CCNNNNNNNGG 1 cut(s) 201
BsmFI GGGAC 1 cut(s) 840
BsnI GGCC 3 cut(s) 40, 205, 584
Bsp1286I GDGCHC 4 cut(s) 26, 110, 424, 870
Bsp143I GATC 6 cut(s) 100, 553, 571, 975, 1113, 1444
BspANI GGCC 3 cut(s) 40, 205, 584
BspCNI CTCAG 2 cut(s) 96, 674
BspFNI CGCG 1 cut(s) 350
BspLI GGNNCC 2 cut(s) 293, 1008
BspMAI CTGCAG 1 cut(s) 932
BspPI GGATC 1 cut(s) 561
BspQI GCTCTTC 1 cut(s) 718
BsrDI GCAATG 1 cut(s) 1041
BsrFI RCCGGY 3 cut(s) 294, 740, 1211
BsrI ACTGG 1 cut(s) 585
BssAI RCCGGY 3 cut(s) 294, 740, 1211
BssECI CCNNGG 2 cut(s) 221, 579
BssMI GATC 6 cut(s) 100, 553, 571, 975, 1113, 1444
BssNI GRCGYC 1 cut(s) 404
Bst4CI ACNGT 3 cut(s) 225, 605, 1349
Bst6I CTCTTC 4 cut(s) 501, 718, 1074, 1230
BstACI GRCGYC 1 cut(s) 404
BstAPI GCANNNNNTGC 1 cut(s) 76
BstBAI YACGTR 1 cut(s) 676
BstC8I GCNNGC 1 cut(s) 730
BstDEI CTNAG 2 cut(s) 104, 661
BstDSI CCRYGG 2 cut(s) 221, 579
BstF5I GGATG 4 cut(s) 103, 234, 828, 1365
BstFNI CGCG 1 cut(s) 350
BstHHI GCGC 1 cut(s) 350
BstKTI GATC 6 cut(s) 103, 556, 574, 978, 1116, 1447
BstMBI GATC 6 cut(s) 100, 553, 571, 975, 1113, 1444
BstMWI GCNNNNNNNGC 9 cut(s) 76, 120, 150, 153, 159, 211, 347, 448, 909
BstSCI CCNGG 2 cut(s) 200, 537
BstSFI CTRYAG 2 cut(s) 548, 928
BstUI CGCG 1 cut(s) 350
BstV1I GCAGC 6 cut(s) 82, 140, 429, 914, 924, 1100
BstV2I GAAGAC 3 cut(s) 891, 897, 1062
BsuRI GGCC 3 cut(s) 40, 205, 584
BtgI CCRYGG 2 cut(s) 221, 579
BtrI CACGTC 1 cut(s) 517
BtsCI GGATG 4 cut(s) 103, 234, 828, 1365
BtsI GCAGTG 1 cut(s) 424
BtsIMutI CAGTG 2 cut(s) 424, 870
Cac8I GCNNGC 1 cut(s) 730
CfoI GCGC 1 cut(s) 350
Cfr10I RCCGGY 3 cut(s) 294, 740, 1211
Cfr13I GGNCC 2 cut(s) 225, 297
CpoI CGGWCCG 1 cut(s) 225
CseI GACGC 2 cut(s) 151, 818
Csp6I GTAC 4 cut(s) 588, 597, 951, 1345
CspI CGGWCCG 1 cut(s) 225
CviAII CATG 1 cut(s) 967
CviQI GTAC 4 cut(s) 588, 597, 951, 1345
DdeI CTNAG 2 cut(s) 104, 661
DpnI GATC 6 cut(s) 102, 555, 573, 977, 1115, 1446
DpnII GATC 6 cut(s) 100, 553, 571, 975, 1113, 1444
EaeI YGGCCR 2 cut(s) 203, 582
Eam1104I CTCTTC 4 cut(s) 501, 718, 1074, 1230
EarI CTCTTC 4 cut(s) 501, 718, 1074, 1230
EciI GGCGGA 2 cut(s) 6, 695
Ecl136II GAGCTC 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 110
Eco32I GATATC 1 cut(s) 181
Eco47I GGWCC 2 cut(s) 225, 297
Eco53kI GAGCTC 1 cut(s) 108
EcoICRI GAGCTC 1 cut(s) 108
EcoRI GAATTC 1 cut(s) 1417
EcoRV GATATC 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 110
FaeI CATG 1 cut(s) 970
FaqI GGGAC 1 cut(s) 840
FatI CATG 1 cut(s) 966
FauI CCCGC 1 cut(s) 149
FauNDI CATATG 2 cut(s) 1158, 1281
FbaI TGATCA 1 cut(s) 1113
FblI GTMKAC 1 cut(s) 1312
FokI GGATG 4 cut(s) 110, 221, 835, 1372
FriOI GRGCYC 1 cut(s) 110
FspBI CTAG 1 cut(s) 1456
GlaI GCGC 1 cut(s) 349
GsuI CTGGAG 1 cut(s) 103
HaeIII GGCC 3 cut(s) 40, 205, 584
HapII CCGG 7 cut(s) 202, 295, 345, 538, 741, 1092, 1212
HgaI GACGC 2 cut(s) 151, 818
HhaI GCGC 1 cut(s) 350
Hin1I GRCGYC 1 cut(s) 404
Hin1II CATG 1 cut(s) 970
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HindIII AAGCTT 1 cut(s) 484
HinfI GANTC 6 cut(s) 58, 168, 262, 749, 984, 1274
HpaII CCGG 7 cut(s) 202, 295, 345, 538, 741, 1092, 1212
HphI GGTGA 4 cut(s) 690, 755, 792, 1276
Hpy166II GTNNAC 6 cut(s) 232, 698, 800, 953, 1048, 1313
Hpy188III TCNNGA 5 cut(s) 259, 300, 557, 806, 988
Hpy8I GTNNAC 6 cut(s) 232, 698, 800, 953, 1048, 1313
Hpy99I CGWCG 2 cut(s) 291, 406
HpyAV CCTTC 5 cut(s) 145, 516, 941, 1156, 1240
HpyCH4III ACNGT 3 cut(s) 225, 605, 1349
HpyCH4IV ACGT 3 cut(s) 404, 516, 675
HpyCH4V TGCA 6 cut(s) 156, 376, 412, 930, 970, 1156
HpyF10VI GCNNNNNNNGC 9 cut(s) 76, 120, 150, 153, 159, 211, 347, 448, 909
HpyF3I CTNAG 2 cut(s) 104, 661
HpySE526I ACGT 3 cut(s) 404, 516, 675
Hsp92I GRCGYC 1 cut(s) 404
Hsp92II CATG 1 cut(s) 970
HspAI GCGC 1 cut(s) 348
Ksp22I TGATCA 1 cut(s) 1113
Kzo9I GATC 6 cut(s) 100, 553, 571, 975, 1113, 1444
LguI GCTCTTC 1 cut(s) 718
LmnI GCTCC 5 cut(s) 113, 119, 291, 541, 1006
Lsp1109I GCAGC 6 cut(s) 82, 140, 429, 914, 924, 1100
LweI GCATC 1 cut(s) 66
MaeI CTAG 1 cut(s) 1456
MaeII ACGT 3 cut(s) 404, 516, 675
MaeIII GTNAC 4 cut(s) 10, 490, 733, 1275
MalI GATC 6 cut(s) 102, 555, 573, 977, 1115, 1446
MboI GATC 6 cut(s) 100, 553, 571, 975, 1113, 1444
MboII GAAGA 9 cut(s) 515, 518, 735, 896, 902, 985, 1067, 1091, 1247
MfeI CAATTG 1 cut(s) 1001
MhlI GDGCHC 4 cut(s) 26, 110, 424, 870
MluCI AATT 6 cut(s) 848, 933, 1001, 1172, 1364, 1417
MlyI GAGTC 1 cut(s) 1283
MmeI TCCRAC 3 cut(s) 310, 339, 646
MroXI GAANNNNTTC 1 cut(s) 1433
MseI TTAA 1 cut(s) 357
MspA1I CMGCKG 3 cut(s) 73, 123, 720
MspI CCGG 7 cut(s) 202, 295, 345, 538, 741, 1092, 1212
MspR9I CCNGG 2 cut(s) 202, 539
MunI CAATTG 1 cut(s) 1001
MvnI CGCG 1 cut(s) 350
MwoI GCNNNNNNNGC 9 cut(s) 76, 120, 150, 153, 159, 211, 347, 448, 909
NciI CCSGG 2 cut(s) 202, 539
NdeI CATATG 2 cut(s) 1158, 1281
NdeII GATC 6 cut(s) 100, 553, 571, 975, 1113, 1444
NlaIII CATG 1 cut(s) 970
NlaIV GGNNCC 2 cut(s) 293, 1008
NmeAIII GCCGAG 1 cut(s) 66
NmuCI GTSAC 2 cut(s) 490, 1275
PciSI GCTCTTC 1 cut(s) 718
PcsI WCGNNNNNNNCGW 2 cut(s) 672, 1056
PdmI GAANNNNTTC 1 cut(s) 1433
PfeI GAWTC 5 cut(s) 58, 168, 262, 749, 984
PfoI TCCNGGA 1 cut(s) 537
PleI GAGTC 1 cut(s) 1282
PpsI GAGTC 1 cut(s) 1282
Ppu21I YACGTR 1 cut(s) 676
Psp124BI GAGCTC 1 cut(s) 110
PspN4I GGNNCC 2 cut(s) 293, 1008
PspPI GGNCC 2 cut(s) 225, 297
PsrI GAACNNNNNNTAC 2 cut(s) 679, 711
PstI CTGCAG 1 cut(s) 932
PvuII CAGCTG 1 cut(s) 73
RsaI GTAC 4 cut(s) 589, 598, 952, 1346
RsaNI GTAC 4 cut(s) 588, 597, 951, 1345
Rsr2I CGGWCCG 1 cut(s) 225
RsrII CGGWCCG 1 cut(s) 225
SacI GAGCTC 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 718
SaqAI TTAA 1 cut(s) 357
Sau3AI GATC 6 cut(s) 100, 553, 571, 975, 1113, 1444
Sau96I GGNCC 2 cut(s) 225, 297
ScaI AGTACT 2 cut(s) 598, 1346
SchI GAGTC 1 cut(s) 1283
ScrFI CCNGG 2 cut(s) 202, 539
SduI GDGCHC 4 cut(s) 26, 110, 424, 870
SfaNI GCATC 1 cut(s) 66
SfcI CTRYAG 2 cut(s) 548, 928
SinI GGWCC 2 cut(s) 225, 297
SmlI CTYRAG 1 cut(s) 804
SmoI CTYRAG 1 cut(s) 804
Sse9I AATT 6 cut(s) 848, 933, 1001, 1172, 1364, 1417
SspMI CTAG 1 cut(s) 1456
SstI GAGCTC 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 200, 537
TaaI ACNGT 3 cut(s) 225, 605, 1349
TaiI ACGT 3 cut(s) 407, 519, 678
TaqII GACCGA 1 cut(s) 1091
TasI AATT 6 cut(s) 848, 933, 1001, 1172, 1364, 1417
TatI WGTACW 3 cut(s) 587, 596, 1344
TauI GCSGC 6 cut(s) 126, 147, 217, 308, 311, 472
TfiI GAWTC 5 cut(s) 58, 168, 262, 749, 984
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 2 cut(s) 424, 870
TseFI GTSAC 2 cut(s) 490, 1275
TseI GCWGC 6 cut(s) 70, 153, 442, 912, 927, 1088
Tsp45I GTSAC 2 cut(s) 490, 1275
TspDTI ATGAA 6 cut(s) 50, 839, 1068, 1175, 1376, 1386
TspGWI ACGGA 3 cut(s) 217, 304, 376
TspRI CASTG 2 cut(s) 424, 870
VpaK11BI GGWCC 2 cut(s) 225, 297
XapI RAATTY 1 cut(s) 1417
XmiI GTMKAC 1 cut(s) 1312
XmnI GAANNNNTTC 1 cut(s) 1433
XspI CTAG 1 cut(s) 1456
ZraI GACGTC 1 cut(s) 405
ZrmI AGTACT 2 cut(s) 598, 1346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.