Rh7BG182300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013961
Physical Location & Seq
Forward (+)
14523522 .. 14528403
4882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG182300.1

Sequence Viewer

Length: 1461 bp
ATGGCTTTAGTAACTCCGCCGTGCTCTGAAATTCAAAAACCGAGAAAATCAGCTATTATTCAGAAGAAGCCGTTGATGCTCAAAGATTATCTGATGGACGATCTGAGCTCCTGCTCATCCAGCGGCTTCAAATCCTTCCCACGCCGCCAATGCTGCACAACCGTCCGATTTCTCCTCGAGATCGACCTCAAATCCTCCTCCCGGCCACAACTGCCGCTGCCGCCGCCGCCGCAGTCCATTCACAACCACAACAACTTCAAGAATCAAAAGCCAAAGCAACTACTCCGACGGAGCCGGTCCAGAGCCGTCTCCTCCAACACCCTCTCCGCTCTCCAAAGAGCTTCCGGCGCCGTCATTAACGCCGTAAGAAACTTGCAGTTTCACACCGCCAAGTCCTCCTCCTCCTCCTCGACGTCCGTACAAAGCAGTGCTCGGAAAGGTGGCTTGGTACTGCTTCTGCCTCGAAGCATTTCACGGCGGCTGTGGAGGAAGAGCTTCCGGACAAAAGTAGAAGAAGAAGAGAAAGACATAGTTAAGTGGAGATCGTTCCGGGAACTTCTGCAGGAGCAAGATAAGCCGTCCGATCAGACCACCGCCAGTACAAAAAGTACCGACAGTAAAACCAACAGCAACAGTTGGGGGGATCAGAGCGAGTTTAGTTTGACCTCGGAGAGTTCAATTGGCAACGACGTGGCGGAAGGTAAAAATAGTTTACCAGAAAATAAGAAAGTCGGCGGAAGAGTTGGCGTAACAGCCGGTGAGGATTCCATTGAAATACCAATCACCACCACCACCACCTCCACCTGCTCACCTCAAAACGCAAAGGTGTGGCTGAATAAAGAGGAGGAGAAAGAACAGTTTAGTCCCGTGTCGGTGCTCGATTGTCCATTTGAGGATGAAGATGATGAGAGTAGTAGTACCTCTCCTTTTCGTTATAGACTTGCTCGAATGGAAGGTACACAACACAAACTCATGCAGAAGATCAGACGATTCGAGAACCTCGCTCAACTGGAGCCAATCGACTTGAAAAGACGAATGGCAATGTCAGAGACAGATGGAGATGACCGAGATAACAGAACCGAAGAGAAAGCCGGAGAGCTAGTGAAGCAGTTGATCATCAAAACTAGTAGTTCTGCCCTATCGAACGATTTGGTAGTGCATATGAAGGCCGATAAGTTGGTGGTGGATTTGTTCAGAGAGAGGAGTGTCGAAAACAGCAAGGAAAATGTGGTGATGGGAGAGGTACTGAAAGTAGCAGAAGAGTGGGTGAATGGGGAATCACCAGTGTTGTCGAGTTGGGAGGTCGAAAATGGTAGAAAAGTTTATGTTAATGATATGGACAATAATTTCTTTGGGAAGTGGATGAAATTGGATGAACAAGAAAAAGAGGTTGGTTTGGAGTTGGAGGTTGAGGTATGGAATTATTTGCTGAATGAATTCCTGCTTGATCTAGTTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

486

Amino Acids

54.96

Weight (kDa)

6.99

Isoelectric Point (pI)

57.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11780 AT4G23020 AT4G23020
fragaria_vesca FvH4_5g01430
malus_domestica MD04G1068300.v1.1
prunus_persica Prupe.5G089800_v2.0.a1
pyrus_communis pycom04g06170
rosa_chinensis RchiOBHm_Chr7g0199421
rosa_laevigata RLG00000003794
rosa_multiflora Rmu_sc0003890.1_g000015
rosa_roxburghii Rroxscaffold_3G00256740
rosa_rugosa Rorug07G0053800
rosa_samantha Rh7AG178900 Rh7BG182300 Rh7CG187500 Rh7DG181800
rosa_wichuraiana Rw7G015710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 812
AatII GACGTC 1 cut(s) 416
Acc36I ACCTGC 1 cut(s) 812
AccB1I GGYRCC 1 cut(s) 347
AccBSI CCGCTC 1 cut(s) 329
AccIII TCCGGA 1 cut(s) 498
AclWI GGATC 1 cut(s) 651
AcoI YGGCCR 1 cut(s) 203
AcsI RAATTY 2 cut(s) 30, 1436
AcyI GRCGYC 2 cut(s) 348, 413
AfaI GTAC 7 cut(s) 420, 450, 601, 610, 919, 958, 1245
AfiI CCNNNNNNNGG 1 cut(s) 201
AgsI TTSAA 6 cut(s) 35, 130, 259, 678, 773, 1027
AhlI ACTAGT 1 cut(s) 1124
AjiI CACGTC 1 cut(s) 691
AjuI GAANNNNNNNTTGG 4 cut(s) 428, 460, 1374, 1406
AluBI AGCT 6 cut(s) 53, 108, 341, 495, 1099, 1458
AluI AGCT 6 cut(s) 53, 108, 341, 495, 1099, 1458
Alw21I GWGCWC 4 cut(s) 26, 110, 433, 879
Alw26I GTCTC 2 cut(s) 313, 1043
AlwI GGATC 1 cut(s) 651
Ama87I CYCGRG 1 cut(s) 176
Aor13HI TCCGGA 1 cut(s) 498
AoxI GGCC 2 cut(s) 203, 1167
ApeKI GCWGC 2 cut(s) 153, 217
ApoI RAATTY 2 cut(s) 30, 1436
Asp700I GAANNNNTTC 3 cut(s) 469, 494, 1436
AspLEI GCGC 1 cut(s) 350
AspS9I GGNCC 1 cut(s) 297
AsuC2I CCSGG 2 cut(s) 202, 551
AsuHPI GGTGA 6 cut(s) 770, 775, 801, 1243, 1272, 1279
AvaI CYCGRG 1 cut(s) 176
AvaII GGWCC 1 cut(s) 297
BanI GGYRCC 1 cut(s) 347
BanII GRGCYC 1 cut(s) 110
Bbv12I GWGCWC 4 cut(s) 26, 110, 433, 879
BbvI GCAGC 2 cut(s) 140, 204
BccI CCATC 3 cut(s) 88, 1049, 1228
BceAI ACGGC 7 cut(s) 4, 55, 290, 335, 347, 491, 562
BclI TGATCA 1 cut(s) 1113
BcnI CCSGG 2 cut(s) 202, 551
BcoDI GTCTC 2 cut(s) 313, 1043
BcuI ACTAGT 1 cut(s) 1124
BfaI CTAG 4 cut(s) 1100, 1125, 1451, 1459
BfmI CTRYAG 1 cut(s) 560
BfoI RGCGCY 1 cut(s) 351
BfuAI ACCTGC 1 cut(s) 812
Bme1390I CCNGG 2 cut(s) 202, 551
Bme18I GGWCC 1 cut(s) 297
BmeT110I CYCGRG 1 cut(s) 176
BmgBI CACGTC 1 cut(s) 691
BmgT120I GGNCC 1 cut(s) 297
BmiI GGNNCC 3 cut(s) 293, 349, 1014
BmrFI CCNGG 2 cut(s) 202, 551
BmsI GCATC 1 cut(s) 66
BpmI CTGGAG 1 cut(s) 1031
BpuMI CCSGG 2 cut(s) 202, 551
BsaHI GRCGYC 2 cut(s) 348, 413
BsaJI CCNNGG 1 cut(s) 666
BsaWI WCCGGW 1 cut(s) 498
BsaXI ACNNNNNCTCC 4 cut(s) 308, 338, 1086, 1116
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse118I RCCGGY 2 cut(s) 294, 755
Bse1I ACTGG 3 cut(s) 597, 1014, 1283
Bse3DI GCAATG 1 cut(s) 1047
BseAI TCCGGA 1 cut(s) 498
BseDI CCNNGG 1 cut(s) 666
BseGI GGATG 4 cut(s) 116, 901, 1368, 1378
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 1047
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 3 cut(s) 597, 1014, 1283
BseXI GCAGC 2 cut(s) 140, 204
BsgI GTGCAG 1 cut(s) 139
BshFI GGCC 2 cut(s) 205, 1169
BshNI GGYRCC 1 cut(s) 347
BsiHKAI GWGCWC 4 cut(s) 26, 110, 433, 879
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 7 cut(s) 202, 295, 345, 499, 550, 756, 1092
BslFI GGGAC 1 cut(s) 849
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 2 cut(s) 313, 1043
BsmBI CGTCTC 1 cut(s) 313
BsmFI GGGAC 1 cut(s) 849
BsnI GGCC 2 cut(s) 205, 1169
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 4 cut(s) 26, 110, 433, 879
Bsp13I TCCGGA 1 cut(s) 498
Bsp143I GATC 8 cut(s) 100, 180, 542, 583, 643, 981, 1113, 1447
BspANI GGCC 2 cut(s) 205, 1169
BspCNI CTCAG 1 cut(s) 96
BspEI TCCGGA 1 cut(s) 498
BspLI GGNNCC 3 cut(s) 293, 349, 1014
BspMAI CTGCAG 1 cut(s) 564
BspMI ACCTGC 1 cut(s) 812
BspPI GGATC 1 cut(s) 651
BspQI GCTCTTC 1 cut(s) 485
BspT107I GGYRCC 1 cut(s) 347
BsrBI CCGCTC 1 cut(s) 329
BsrDI GCAATG 1 cut(s) 1047
BsrFI RCCGGY 2 cut(s) 294, 755
BsrI ACTGG 3 cut(s) 597, 1014, 1283
BssAI RCCGGY 2 cut(s) 294, 755
BssECI CCNNGG 1 cut(s) 666
BssMI GATC 8 cut(s) 100, 180, 542, 583, 643, 981, 1113, 1447
BssNI GRCGYC 2 cut(s) 348, 413
Bst4CI ACNGT 4 cut(s) 163, 617, 635, 858
Bst6I CTCTTC 5 cut(s) 485, 513, 733, 1077, 1254
BstACI GRCGYC 2 cut(s) 348, 413
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 4 cut(s) 116, 901, 1368, 1378
BstH2I RGCGCY 1 cut(s) 351
BstHHI GCGC 1 cut(s) 350
BstKTI GATC 8 cut(s) 103, 183, 545, 586, 646, 984, 1116, 1450
BstMAI GTCTC 2 cut(s) 313, 1043
BstMBI GATC 8 cut(s) 100, 180, 542, 583, 643, 981, 1113, 1447
BstSCI CCNGG 2 cut(s) 200, 549
BstSFI CTRYAG 1 cut(s) 560
BstV1I GCAGC 2 cut(s) 140, 204
BsuRI GGCC 2 cut(s) 205, 1169
BtrI CACGTC 1 cut(s) 691
BtsCI GGATG 4 cut(s) 116, 901, 1368, 1378
BtsI GCAGTG 1 cut(s) 433
BtsIMutI CAGTG 2 cut(s) 433, 1290
BveI ACCTGC 1 cut(s) 812
CfoI GCGC 1 cut(s) 350
Cfr10I RCCGGY 2 cut(s) 294, 755
Cfr13I GGNCC 1 cut(s) 297
Csp6I GTAC 7 cut(s) 419, 449, 600, 609, 918, 957, 1244
CviAII CATG 1 cut(s) 973
CviQI GTAC 7 cut(s) 419, 449, 600, 609, 918, 957, 1244
DdeI CTNAG 1 cut(s) 104
DinI GGCGCC 1 cut(s) 349
DpnI GATC 8 cut(s) 102, 182, 544, 585, 645, 983, 1115, 1449
DpnII GATC 8 cut(s) 100, 180, 542, 583, 643, 981, 1113, 1447
EaeI YGGCCR 1 cut(s) 203
Eam1104I CTCTTC 5 cut(s) 485, 513, 733, 1077, 1254
EarI CTCTTC 5 cut(s) 485, 513, 733, 1077, 1254
EciI GGCGGA 3 cut(s) 6, 710, 750
Ecl136II GAGCTC 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 297
Eco53kI GAGCTC 1 cut(s) 108
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 108
EcoRI GAATTC 1 cut(s) 1436
EcoT38I GRGCYC 1 cut(s) 110
EgeI GGCGCC 1 cut(s) 349
EheI GGCGCC 1 cut(s) 349
Esp3I CGTCTC 1 cut(s) 313
FaeI CATG 1 cut(s) 976
FaiI YATR 8 cut(s) 530, 936, 974, 1161, 1163, 1326, 1337, 1417
FaqI GGGAC 1 cut(s) 849
FatI CATG 1 cut(s) 972
FauNDI CATATG 1 cut(s) 1161
FbaI TGATCA 1 cut(s) 1113
FokI GGATG 4 cut(s) 103, 908, 1375, 1385
FriOI GRGCYC 1 cut(s) 110
FspBI CTAG 4 cut(s) 1100, 1125, 1451, 1459
GlaI GCGC 1 cut(s) 349
GsuI CTGGAG 1 cut(s) 1031
HaeII RGCGCY 1 cut(s) 351
HaeIII GGCC 2 cut(s) 205, 1169
HapII CCGG 7 cut(s) 202, 295, 345, 499, 550, 756, 1092
HhaI GCGC 1 cut(s) 350
Hin1I GRCGYC 2 cut(s) 348, 413
Hin1II CATG 1 cut(s) 976
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HinfI GANTC 4 cut(s) 262, 764, 990, 1277
HpaII CCGG 7 cut(s) 202, 295, 345, 499, 550, 756, 1092
HphI GGTGA 6 cut(s) 770, 775, 801, 1243, 1272, 1279
Hpy166II GTNNAC 2 cut(s) 713, 959
Hpy188III TCNNGA 5 cut(s) 178, 259, 300, 499, 994
Hpy8I GTNNAC 2 cut(s) 713, 959
Hpy99I CGWCG 3 cut(s) 291, 415, 692
HpyAV CCTTC 4 cut(s) 145, 692, 947, 1159
HpyCH4III ACNGT 4 cut(s) 163, 617, 635, 858
HpyCH4IV ACGT 2 cut(s) 413, 690
HpyCH4V TGCA 5 cut(s) 156, 376, 562, 976, 1159
HpyF3I CTNAG 1 cut(s) 104
HpySE526I ACGT 2 cut(s) 413, 690
Hsp92I GRCGYC 2 cut(s) 348, 413
Hsp92II CATG 1 cut(s) 976
HspAI GCGC 1 cut(s) 348
KasI GGCGCC 1 cut(s) 347
Kpn2I TCCGGA 1 cut(s) 498
Ksp22I TGATCA 1 cut(s) 1113
Kzo9I GATC 8 cut(s) 100, 180, 542, 583, 643, 981, 1113, 1447
LguI GCTCTTC 1 cut(s) 485
LmnI GCTCC 4 cut(s) 113, 291, 565, 1012
Lsp1109I GCAGC 2 cut(s) 140, 204
LweI GCATC 1 cut(s) 66
MaeI CTAG 4 cut(s) 1100, 1125, 1451, 1459
MaeII ACGT 2 cut(s) 413, 690
MaeIII GTNAC 2 cut(s) 10, 748
MalI GATC 8 cut(s) 102, 182, 544, 585, 645, 983, 1115, 1449
MbiI CCGCTC 1 cut(s) 329
MboI GATC 8 cut(s) 100, 180, 542, 583, 643, 981, 1113, 1447
MfeI CAATTG 1 cut(s) 678
MhlI GDGCHC 4 cut(s) 26, 110, 433, 879
MluCI AATT 6 cut(s) 30, 678, 1345, 1367, 1420, 1436
Mly113I GGCGCC 1 cut(s) 348
MmeI TCCRAC 3 cut(s) 310, 339, 1383
MroI TCCGGA 1 cut(s) 498
MroXI GAANNNNTTC 3 cut(s) 469, 494, 1436
MseI TTAA 3 cut(s) 357, 534, 1329
MspA1I CMGCKG 2 cut(s) 123, 217
MspI CCGG 7 cut(s) 202, 295, 345, 499, 550, 756, 1092
MspR9I CCNGG 2 cut(s) 202, 551
MunI CAATTG 1 cut(s) 678
NarI GGCGCC 1 cut(s) 348
NciI CCSGG 2 cut(s) 202, 551
NdeI CATATG 1 cut(s) 1161
NdeII GATC 8 cut(s) 100, 180, 542, 583, 643, 981, 1113, 1447
NlaIII CATG 1 cut(s) 976
NlaIV GGNNCC 3 cut(s) 293, 349, 1014
PaeR7I CTCGAG 1 cut(s) 176
PaqCI CACCTGC 1 cut(s) 812
PciSI GCTCTTC 1 cut(s) 485
PdmI GAANNNNTTC 3 cut(s) 469, 494, 1436
PfeI GAWTC 4 cut(s) 262, 764, 990, 1277
PfoI TCCNGGA 1 cut(s) 549
PluTI GGCGCC 1 cut(s) 351
Psp124BI GAGCTC 1 cut(s) 110
PspN4I GGNNCC 3 cut(s) 293, 349, 1014
PspPI GGNCC 1 cut(s) 297
PstI CTGCAG 1 cut(s) 564
RsaI GTAC 7 cut(s) 420, 450, 601, 610, 919, 958, 1245
RsaNI GTAC 7 cut(s) 419, 449, 600, 609, 918, 957, 1244
SacI GAGCTC 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 485
SaqAI TTAA 3 cut(s) 357, 534, 1329
Sau3AI GATC 8 cut(s) 100, 180, 542, 583, 643, 981, 1113, 1447
Sau96I GGNCC 1 cut(s) 297
ScrFI CCNGG 2 cut(s) 202, 551
SduI GDGCHC 4 cut(s) 26, 110, 433, 879
SfaNI GCATC 1 cut(s) 66
SfcI CTRYAG 1 cut(s) 560
SfoI GGCGCC 1 cut(s) 349
Sfr274I CTCGAG 1 cut(s) 176
SinI GGWCC 1 cut(s) 297
SlaI CTCGAG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SpeI ACTAGT 1 cut(s) 1124
Sse9I AATT 6 cut(s) 30, 678, 1345, 1367, 1420, 1436
SspDI GGCGCC 1 cut(s) 347
SspMI CTAG 4 cut(s) 1100, 1125, 1451, 1459
SstI GAGCTC 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 200, 549
TaaI ACNGT 4 cut(s) 163, 617, 635, 858
TaiI ACGT 2 cut(s) 416, 693
TaqII GACCGA 1 cut(s) 1080
TasI AATT 6 cut(s) 30, 678, 1345, 1367, 1420, 1436
TatI WGTACW 1 cut(s) 599
TauI GCSGC 8 cut(s) 126, 147, 217, 223, 226, 229, 232, 481
TfiI GAWTC 4 cut(s) 262, 764, 990, 1277
Tru1I TTAA 3 cut(s) 357, 534, 1329
Tru9I TTAA 3 cut(s) 357, 534, 1329
TscAI CASTG 2 cut(s) 433, 1290
TseI GCWGC 2 cut(s) 153, 217
TspDTI ATGAA 5 cut(s) 912, 1178, 1379, 1389, 1449
TspGWI ACGGA 2 cut(s) 304, 406
TspRI CASTG 2 cut(s) 433, 1290
VpaK11BI GGWCC 1 cut(s) 297
XapI RAATTY 2 cut(s) 30, 1436
XhoI CTCGAG 1 cut(s) 176
XmnI GAANNNNTTC 3 cut(s) 469, 494, 1436
XspI CTAG 4 cut(s) 1100, 1125, 1451, 1459
ZraI GACGTC 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.