Rroxscaffold_3G00256740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0013961
Physical Location & Seq
Reverse (-)
51130056 .. 51134550
4495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00256740.1

Sequence Viewer

Length: 1386 bp
ATGGCTTTAGTAACTCCGCCGTGCTCTGAAATTCAAAAGCAGAGAAAATCAGCTATTATTCAGAAGAAGCCGTTGATGCTCAAGGATTATCTGATGGACGATCTGAGCTCCTGCTCATCCAGCGGCTTCAAATCCTTCCCACGCCGCCAATGCTGCACAACCGTCCGATTTCTCCTCGAGATCGACCTCAAATCCTCCTCCCGGCCACAACTGCCGCCTTCGCAGTCCATTCACAACCACAAAAACTTCAAGAATCAAAAGCCAAAGCAACTACTCCGACGGAGCCGGTCCAGAGCCGCCTCCTCCAACACCCTCTCCGCTCTCCAAAGAGCTTCCGGCGCCGTCATTAACGCGGTCAGAAACTTGCAGTTTCACTCCGTCAAGTCCACCTCGTCGTCTGTACAAAGCAATGCTCGGAAAGGAGGTTTGGTACTGCTTCTGCCTCGAAGCATTTCACGGCGGCTGTGGAGGAAGAGCTTCCGGACAAAAGTAGAAGAAGAAGAGAAAAACATGGTTAAGTGGAGATCGTTCCGGGAACTTCTGCAGGAGCAAGATAAGCCGTCCGATCAGACCACCGCCAGTACAAAAAGTACCGACAGTAAAACCAACAGCAACAGTTGGGGGGAGAGCGAGTTTAGTTTGACGTCGGAGAGTTCAACTGGCAACGACGTGGCGGAAGGTAAAAATAGTTTACCAGAAAATAAGAAAGTCGGCGGAAGAGTTGGCATAACAGCCGGTGAGGATTCCATTGAAACACCAACCACCACCACCTCCACCTGCTCACCTCAAAACGCAAAGGTGTGGCTGAATAAAGAGGAGGAGAAAGAACAGTTTAGTCCCGTGTCGGTGCTTGATTGTCCATTTGAGGATGAAGATGATGAGAGTAGTAGTAGCTCTCCTTTTCGCTATAGACTTGCTCGAATGGAAGGTACACAACACAAACTCATGCAGAAGATCAGACGATTCGAGAACCTCGCTCAACTGGAGCCAATCGACTTGGAAAGACGAATGGCAATGTCAGAGACAGATGGAGATGCCCGAGATAACAGAACCGAAGAGAAAGCCGGAGAGCTAGTGAAGCAGTTGATCATCAAAACTAGTAGTTCTGCCCTATCGAACGATTTGGTAGTGCATATGAAGGCCGATAAGTTGGTGGTGGATTTGTTCAGAGAGAGGAGTGTCGAAAACAGTAAGGAAAATGAGGTCATGGGAGAGGTACTGAAAGTAGCAGAAGAGTGGGTGAATGGGGAATCAACAATGTTGTCGAGTTGGGAGGTTGAAAATGGTAGAAAAGTTTATGTTAATGATATGGACAATAATTTCTTTGGGAAGTGGATGAAATTGGATGAACAAGAAAAAAGAGGTTGGTTTGGAGTTGGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

461

Amino Acids

52.13

Weight (kDa)

8.92

Isoelectric Point (pI)

57.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11780 AT4G23020 AT4G23020
fragaria_vesca FvH4_5g01430
malus_domestica MD04G1068300.v1.1
prunus_persica Prupe.5G089800_v2.0.a1
pyrus_communis pycom04g06170
rosa_chinensis RchiOBHm_Chr7g0199421
rosa_laevigata RLG00000003794
rosa_multiflora Rmu_sc0003890.1_g000015
rosa_roxburghii Rroxscaffold_3G00256740
rosa_rugosa Rorug07G0053800
rosa_samantha Rh7AG178900 Rh7BG182300 Rh7CG187500 Rh7DG181800
rosa_wichuraiana Rw7G015710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 785
AatII GACGTC 1 cut(s) 647
Acc36I ACCTGC 1 cut(s) 785
AccB1I GGYRCC 1 cut(s) 338
AccBSI CCGCTC 1 cut(s) 320
AccII CGCG 1 cut(s) 353
AccIII TCCGGA 1 cut(s) 480
AcoI YGGCCR 1 cut(s) 203
AcsI RAATTY 1 cut(s) 30
AcyI GRCGYC 2 cut(s) 339, 644
AfaI GTAC 6 cut(s) 402, 432, 583, 592, 931, 1218
AfiI CCNNNNNNNGG 1 cut(s) 201
AgsI TTSAA 6 cut(s) 35, 130, 250, 657, 752, 1280
AhlI ACTAGT 1 cut(s) 1097
AjiI CACGTC 1 cut(s) 670
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
AluBI AGCT 6 cut(s) 53, 108, 332, 477, 894, 1072
AluI AGCT 6 cut(s) 53, 108, 332, 477, 894, 1072
Alw21I GWGCWC 2 cut(s) 26, 110
Alw26I GTCTC 1 cut(s) 1016
Ama87I CYCGRG 2 cut(s) 176, 1038
Aor13HI TCCGGA 1 cut(s) 480
AoxI GGCC 2 cut(s) 203, 1140
ApeKI GCWGC 1 cut(s) 153
ApoI RAATTY 1 cut(s) 30
Asp700I GAANNNNTTC 2 cut(s) 451, 476
AspLEI GCGC 1 cut(s) 341
AspS9I GGNCC 1 cut(s) 288
AsuC2I CCSGG 2 cut(s) 202, 533
AsuHPI GGTGA 3 cut(s) 749, 774, 1252
AvaI CYCGRG 2 cut(s) 176, 1038
AvaII GGWCC 1 cut(s) 288
BanI GGYRCC 1 cut(s) 338
BanII GRGCYC 1 cut(s) 110
Bbv12I GWGCWC 2 cut(s) 26, 110
BbvI GCAGC 1 cut(s) 140
BccI CCATC 2 cut(s) 88, 1022
BceAI ACGGC 5 cut(s) 4, 55, 326, 473, 544
BclI TGATCA 1 cut(s) 1086
BcnI CCSGG 2 cut(s) 202, 533
BcoDI GTCTC 1 cut(s) 1016
BcuI ACTAGT 1 cut(s) 1097
BfaI CTAG 2 cut(s) 1073, 1098
BfmI CTRYAG 2 cut(s) 542, 907
BfoI RGCGCY 1 cut(s) 342
BfuAI ACCTGC 1 cut(s) 785
BisI GCNGC 6 cut(s) 124, 145, 154, 215, 297, 461
BlsI GCNGC 6 cut(s) 125, 146, 155, 216, 298, 462
Bme1390I CCNGG 2 cut(s) 202, 533
Bme18I GGWCC 1 cut(s) 288
BmeT110I CYCGRG 2 cut(s) 176, 1038
BmgBI CACGTC 1 cut(s) 670
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 3 cut(s) 284, 340, 987
BmrFI CCNGG 2 cut(s) 202, 533
BmsI GCATC 2 cut(s) 66, 1024
BpmI CTGGAG 1 cut(s) 1004
BpuEI CTTGAG 1 cut(s) 65
BpuMI CCSGG 2 cut(s) 202, 533
BsaHI GRCGYC 2 cut(s) 339, 644
BsaWI WCCGGW 1 cut(s) 480
BsaXI ACNNNNNCTCC 8 cut(s) 299, 329, 414, 444, 617, 647, 1059, 1089
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse118I RCCGGY 2 cut(s) 285, 734
Bse1I ACTGG 3 cut(s) 579, 664, 987
Bse3DI GCAATG 2 cut(s) 415, 1020
BseAI TCCGGA 1 cut(s) 480
BseGI GGATG 4 cut(s) 116, 874, 1341, 1351
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMI GCAATG 2 cut(s) 415, 1020
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 3 cut(s) 579, 664, 987
BseRI GAGGAG 6 cut(s) 164, 187, 292, 830, 833, 1189
BseXI GCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 139
Bsh1236I CGCG 1 cut(s) 353
BshFI GGCC 2 cut(s) 205, 1142
BshNI GGYRCC 1 cut(s) 338
BsiHKAI GWGCWC 2 cut(s) 26, 110
BsiHKCI CYCGRG 2 cut(s) 176, 1038
BsiSI CCGG 7 cut(s) 202, 286, 336, 481, 532, 735, 1065
BslFI GGGAC 1 cut(s) 822
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 1016
BsmFI GGGAC 1 cut(s) 822
BsnI GGCC 2 cut(s) 205, 1142
BsoBI CYCGRG 2 cut(s) 176, 1038
Bsp1286I GDGCHC 2 cut(s) 26, 110
Bsp13I TCCGGA 1 cut(s) 480
Bsp1407I TGTACA 1 cut(s) 400
Bsp143I GATC 6 cut(s) 100, 180, 524, 565, 954, 1086
BspANI GGCC 2 cut(s) 205, 1142
BspCNI CTCAG 1 cut(s) 96
BspEI TCCGGA 1 cut(s) 480
BspFNI CGCG 1 cut(s) 353
BspLI GGNNCC 3 cut(s) 284, 340, 987
BspMAI CTGCAG 1 cut(s) 546
BspMI ACCTGC 1 cut(s) 785
BspQI GCTCTTC 1 cut(s) 467
BspT107I GGYRCC 1 cut(s) 338
BsrBI CCGCTC 1 cut(s) 320
BsrDI GCAATG 2 cut(s) 415, 1020
BsrFI RCCGGY 2 cut(s) 285, 734
BsrGI TGTACA 1 cut(s) 400
BsrI ACTGG 3 cut(s) 579, 664, 987
BssAI RCCGGY 2 cut(s) 285, 734
BssMI GATC 6 cut(s) 100, 180, 524, 565, 954, 1086
BssNI GRCGYC 2 cut(s) 339, 644
Bst4CI ACNGT 5 cut(s) 163, 599, 617, 831, 1190
Bst6I CTCTTC 5 cut(s) 467, 495, 712, 1050, 1227
BstACI GRCGYC 2 cut(s) 339, 644
BstAUI TGTACA 1 cut(s) 400
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 4 cut(s) 116, 874, 1341, 1351
BstFNI CGCG 1 cut(s) 353
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 1 cut(s) 341
BstKTI GATC 6 cut(s) 103, 183, 527, 568, 957, 1089
BstMAI GTCTC 1 cut(s) 1016
BstMBI GATC 6 cut(s) 100, 180, 524, 565, 954, 1086
BstMWI GCNNNNNNNGC 9 cut(s) 76, 120, 150, 153, 211, 220, 338, 556, 1078
BstSCI CCNGG 2 cut(s) 200, 531
BstSFI CTRYAG 2 cut(s) 542, 907
BstUI CGCG 1 cut(s) 353
BstV1I GCAGC 1 cut(s) 140
BsuRI GGCC 2 cut(s) 205, 1142
BtrI CACGTC 1 cut(s) 670
BtsCI GGATG 4 cut(s) 116, 874, 1341, 1351
BveI ACCTGC 1 cut(s) 785
CfoI GCGC 1 cut(s) 341
Cfr10I RCCGGY 2 cut(s) 285, 734
Cfr13I GGNCC 1 cut(s) 288
Csp6I GTAC 6 cut(s) 401, 431, 582, 591, 930, 1217
CviAII CATG 3 cut(s) 511, 946, 1207
CviQI GTAC 6 cut(s) 401, 431, 582, 591, 930, 1217
DdeI CTNAG 1 cut(s) 104
DinI GGCGCC 1 cut(s) 340
DpnI GATC 6 cut(s) 102, 182, 526, 567, 956, 1088
DpnII GATC 6 cut(s) 100, 180, 524, 565, 954, 1086
EaeI YGGCCR 1 cut(s) 203
Eam1104I CTCTTC 5 cut(s) 467, 495, 712, 1050, 1227
EarI CTCTTC 5 cut(s) 467, 495, 712, 1050, 1227
EciI GGCGGA 3 cut(s) 6, 689, 729
Ecl136II GAGCTC 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 288
Eco53kI GAGCTC 1 cut(s) 108
Eco88I CYCGRG 2 cut(s) 176, 1038
EcoICRI GAGCTC 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 110
EgeI GGCGCC 1 cut(s) 340
EheI GGCGCC 1 cut(s) 340
FaeI CATG 3 cut(s) 514, 949, 1210
FaiI YATR 9 cut(s) 512, 728, 909, 947, 1134, 1136, 1208, 1299, 1310
FaqI GGGAC 1 cut(s) 822
FatI CATG 3 cut(s) 510, 945, 1206
FauNDI CATATG 1 cut(s) 1134
FbaI TGATCA 1 cut(s) 1086
Fnu4HI GCNGC 6 cut(s) 124, 145, 154, 215, 297, 461
FokI GGATG 4 cut(s) 103, 881, 1348, 1358
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 6 cut(s) 124, 145, 154, 215, 297, 461
FspBI CTAG 2 cut(s) 1073, 1098
GlaI GCGC 1 cut(s) 340
GluI GCNGC 6 cut(s) 124, 145, 154, 215, 297, 461
GsuI CTGGAG 1 cut(s) 1004
HaeII RGCGCY 1 cut(s) 342
HaeIII GGCC 2 cut(s) 205, 1142
HapII CCGG 7 cut(s) 202, 286, 336, 481, 532, 735, 1065
HhaI GCGC 1 cut(s) 341
Hin1I GRCGYC 2 cut(s) 339, 644
Hin1II CATG 3 cut(s) 514, 949, 1210
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HinfI GANTC 4 cut(s) 253, 743, 963, 1250
HpaII CCGG 7 cut(s) 202, 286, 336, 481, 532, 735, 1065
HphI GGTGA 3 cut(s) 749, 774, 1252
Hpy166II GTNNAC 3 cut(s) 387, 692, 932
Hpy188III TCNNGA 5 cut(s) 178, 250, 291, 481, 967
Hpy8I GTNNAC 3 cut(s) 387, 692, 932
Hpy99I CGWCG 4 cut(s) 282, 397, 649, 671
HpyAV CCTTC 5 cut(s) 145, 228, 671, 920, 1132
HpyCH4III ACNGT 5 cut(s) 163, 599, 617, 831, 1190
HpyCH4IV ACGT 2 cut(s) 644, 669
HpyCH4V TGCA 5 cut(s) 156, 367, 544, 949, 1132
HpyF10VI GCNNNNNNNGC 9 cut(s) 76, 120, 150, 153, 211, 220, 338, 556, 1078
HpyF3I CTNAG 1 cut(s) 104
HpySE526I ACGT 2 cut(s) 644, 669
Hsp92I GRCGYC 2 cut(s) 339, 644
Hsp92II CATG 3 cut(s) 514, 949, 1210
HspAI GCGC 1 cut(s) 339
KasI GGCGCC 1 cut(s) 338
Kpn2I TCCGGA 1 cut(s) 480
Ksp22I TGATCA 1 cut(s) 1086
Kzo9I GATC 6 cut(s) 100, 180, 524, 565, 954, 1086
LguI GCTCTTC 1 cut(s) 467
LmnI GCTCC 4 cut(s) 113, 282, 547, 985
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 2 cut(s) 66, 1024
MaeI CTAG 2 cut(s) 1073, 1098
MaeII ACGT 2 cut(s) 644, 669
MaeIII GTNAC 1 cut(s) 10
MalI GATC 6 cut(s) 102, 182, 526, 567, 956, 1088
MbiI CCGCTC 1 cut(s) 320
MboI GATC 6 cut(s) 100, 180, 524, 565, 954, 1086
MhlI GDGCHC 2 cut(s) 26, 110
MluCI AATT 3 cut(s) 30, 1318, 1340
Mly113I GGCGCC 1 cut(s) 339
MmeI TCCRAC 4 cut(s) 301, 330, 627, 1357
MroI TCCGGA 1 cut(s) 480
MroXI GAANNNNTTC 2 cut(s) 451, 476
MseI TTAA 3 cut(s) 348, 516, 1302
MspA1I CMGCKG 1 cut(s) 123
MspI CCGG 7 cut(s) 202, 286, 336, 481, 532, 735, 1065
MspR9I CCNGG 2 cut(s) 202, 533
MvnI CGCG 1 cut(s) 353
MwoI GCNNNNNNNGC 9 cut(s) 76, 120, 150, 153, 211, 220, 338, 556, 1078
NarI GGCGCC 1 cut(s) 339
NciI CCSGG 2 cut(s) 202, 533
NdeI CATATG 1 cut(s) 1134
NdeII GATC 6 cut(s) 100, 180, 524, 565, 954, 1086
NlaIII CATG 3 cut(s) 514, 949, 1210
NlaIV GGNNCC 3 cut(s) 284, 340, 987
PaeR7I CTCGAG 1 cut(s) 176
PaqCI CACCTGC 1 cut(s) 785
PciSI GCTCTTC 1 cut(s) 467
PdmI GAANNNNTTC 2 cut(s) 451, 476
PfeI GAWTC 4 cut(s) 253, 743, 963, 1250
PfoI TCCNGGA 1 cut(s) 531
PkrI GCNGC 6 cut(s) 125, 146, 155, 216, 298, 462
PluTI GGCGCC 1 cut(s) 342
Psp124BI GAGCTC 1 cut(s) 110
PspN4I GGNNCC 3 cut(s) 284, 340, 987
PspPI GGNCC 1 cut(s) 288
PstI CTGCAG 1 cut(s) 546
RsaI GTAC 6 cut(s) 402, 432, 583, 592, 931, 1218
RsaNI GTAC 6 cut(s) 401, 431, 582, 591, 930, 1217
SacI GAGCTC 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 467
SaqAI TTAA 3 cut(s) 348, 516, 1302
SatI GCNGC 6 cut(s) 124, 145, 154, 215, 297, 461
Sau3AI GATC 6 cut(s) 100, 180, 524, 565, 954, 1086
Sau96I GGNCC 1 cut(s) 288
ScrFI CCNGG 2 cut(s) 202, 533
SduI GDGCHC 2 cut(s) 26, 110
SfaNI GCATC 2 cut(s) 66, 1024
SfcI CTRYAG 2 cut(s) 542, 907
SfoI GGCGCC 1 cut(s) 340
Sfr274I CTCGAG 1 cut(s) 176
SinI GGWCC 1 cut(s) 288
SlaI CTCGAG 1 cut(s) 176
SmlI CTYRAG 2 cut(s) 80, 176
SmoI CTYRAG 2 cut(s) 80, 176
SpeI ACTAGT 1 cut(s) 1097
Sse9I AATT 3 cut(s) 30, 1318, 1340
SspDI GGCGCC 1 cut(s) 338
SspMI CTAG 2 cut(s) 1073, 1098
SstI GAGCTC 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 200, 531
TaaI ACNGT 5 cut(s) 163, 599, 617, 831, 1190
TaiI ACGT 2 cut(s) 647, 672
TaqI TCGA 9 cut(s) 177, 183, 445, 919, 966, 993, 1115, 1182, 1265
TasI AATT 3 cut(s) 30, 1318, 1340
TatI WGTACW 2 cut(s) 400, 581
TauI GCSGC 5 cut(s) 126, 147, 217, 299, 463
TfiI GAWTC 4 cut(s) 253, 743, 963, 1250
Tru1I TTAA 3 cut(s) 348, 516, 1302
Tru9I TTAA 3 cut(s) 348, 516, 1302
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 4 cut(s) 885, 1151, 1352, 1362
TspGWI ACGGA 2 cut(s) 295, 367
VpaK11BI GGWCC 1 cut(s) 288
XapI RAATTY 1 cut(s) 30
XhoI CTCGAG 1 cut(s) 176
XmnI GAANNNNTTC 2 cut(s) 451, 476
XspI CTAG 2 cut(s) 1073, 1098
ZraI GACGTC 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.