Rh7CG187500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0013961
Physical Location & Seq
Forward (+)
16507341 .. 16515359
8019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG187500.1

Sequence Viewer

Length: 1443 bp
ATGGCTTTAGTAACTCCGCCGTGCTCGGAAATTCAAAGGCCGAGAAAATCAGCTATGATTCAGAAGAAGCCGTTGATGCTCAAAGATTATCTGATGGACGATCTGAGCTCCTGCTCATCCAGCGGCTTCAAATCATTCCCACGCCTCCAATGCTGCACAACCGTCCGATTTCTCCTCGAGATCGACCTCAAATCCTCCTCCCGGCCACAACTGCCGCCGCCGCAGTCCATTCACAACCACAACAACTTCAAGAATCAAAAGCCAAAGCAACTACTCCGACGGAGCCGGTCCAGAGCCGCCTCCTCCAACACCCTCTCCGCTCTCCAAAGAGCTTCAGGCGCCGTCATTAACGCCGTCAGAAACTTGCAGTTTCACACCGCCAAGTCCTCCTCCTCCTCCCCGACGTCCGTACAAAGCAGTGCTCGGAAAGGTGGCTTGGTACTGCTTCTGCCTCGAAGCATTTCACGGCGGCTGTGGAGGAAGAGCTTCCGGACAAAAGTAGAAGAAGAAGAGAGAGACATAGTCAAGTGGAGATCGTTCCGGGAACTTCTGCAGGAGCAAGATAAGCCGTCCGATCAGACCACCGCCAGTACAAAAAGTACCGACAGTAAAACCAACAGCAACAGTTGGGGGGAGAGCGAGTTTAGTTTGACCTCGGAGAGTTCAATTAGCAACGACGTGGCGGAAGGTAAAAATAGTTTACCAGAAAATAAGAAAGTCGGCGGAAGAGTTGGCGTAACAGCCGGTGAGGATTCCATGGAAACACCAACCACCACCACCTCCACCTGCTCACCTCAAAACGCAAAGGTGTGGCTGAATAAGGAGGAGGAGAAAGACCAGTTAAGTCCCGTGTCGGTGCTCGATTGTCCATTTGAGGATGAAGATGATGAGAGTAGTAGTAGCTCTCCTTTTCGTTATAGACTTGCTCGAATGGAAGGTACGCAACACAAACTCATGCAGAAGATCAGACGATTCGAGAACCTCGCTCAACTGGAGCCAATCGACTTGGAAAGACGAATGGCAACGTCAGAGACAGATAGAGATGACCGAGATAACAGAACCGAAGAGAAAGCCGGAGAGCTAGTGAAGCAGTTGATCATCAAAACTAGTAGTTCTGCCCTATCGAACGATTTGGTAGTGCATATGAAGGCCGATAAGTTGGCGGTGGATTTGTTCAGAGAGAGGAGTGTTGAAAACAGCAAGGAAAATGTGGTGATGGGAGAGGTACTGAAAGTAGCAGAAGAGTGGGTGAATGGGGAATCACCAATGTTGCCGAGTTGGGAAGTCGAAAATGGTAGAAAAGTTTATGTTAATGATATGGACAATAATTTCTTTGGGAAGTGGATGAAATTGGATGAACAAGAAAAAGAGGTTGGTTTGGAGTTGGAGGTTGAGGTATGGAATTATTTGCTGAATGAATTCCTGCTTGATCTAGTTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

480

Amino Acids

54.39

Weight (kDa)

6.35

Isoelectric Point (pI)

54.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11780 AT4G23020 AT4G23020
fragaria_vesca FvH4_5g01430
malus_domestica MD04G1068300.v1.1
prunus_persica Prupe.5G089800_v2.0.a1
pyrus_communis pycom04g06170
rosa_chinensis RchiOBHm_Chr7g0199421
rosa_laevigata RLG00000003794
rosa_multiflora Rmu_sc0003890.1_g000015
rosa_roxburghii Rroxscaffold_3G00256740
rosa_rugosa Rorug07G0053800
rosa_samantha Rh7AG178900 Rh7BG182300 Rh7CG187500 Rh7DG181800
rosa_wichuraiana Rw7G015710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 794
AatII GACGTC 1 cut(s) 407
Acc36I ACCTGC 1 cut(s) 794
AccB1I GGYRCC 1 cut(s) 338
AccBSI CCGCTC 1 cut(s) 320
AccIII TCCGGA 1 cut(s) 489
AcoI YGGCCR 1 cut(s) 203
AcsI RAATTY 2 cut(s) 30, 1418
AcuI CTGAAG 1 cut(s) 318
AcyI GRCGYC 2 cut(s) 339, 404
AfaI GTAC 6 cut(s) 411, 441, 592, 601, 940, 1227
AfiI CCNNNNNNNGG 1 cut(s) 201
AgsI TTSAA 5 cut(s) 35, 130, 250, 666, 1193
AhlI ACTAGT 1 cut(s) 1106
AjiI CACGTC 1 cut(s) 679
AjuI GAANNNNNNNTTGG 4 cut(s) 419, 451, 1356, 1388
AluBI AGCT 7 cut(s) 53, 108, 332, 486, 903, 1081, 1440
AluI AGCT 7 cut(s) 53, 108, 332, 486, 903, 1081, 1440
Alw21I GWGCWC 4 cut(s) 26, 110, 424, 861
Alw26I GTCTC 2 cut(s) 510, 1025
Ama87I CYCGRG 1 cut(s) 176
Aor13HI TCCGGA 1 cut(s) 489
AoxI GGCC 3 cut(s) 38, 203, 1149
ApeKI GCWGC 1 cut(s) 153
ApoI RAATTY 2 cut(s) 30, 1418
Asp700I GAANNNNTTC 3 cut(s) 460, 485, 1418
AspLEI GCGC 1 cut(s) 341
AspS9I GGNCC 1 cut(s) 288
AsuC2I CCSGG 2 cut(s) 202, 542
AsuHPI GGTGA 5 cut(s) 758, 783, 1225, 1254, 1261
AvaI CYCGRG 1 cut(s) 176
AvaII GGWCC 1 cut(s) 288
BanI GGYRCC 1 cut(s) 338
BanII GRGCYC 1 cut(s) 110
Bbv12I GWGCWC 4 cut(s) 26, 110, 424, 861
BbvI GCAGC 1 cut(s) 140
BccI CCATC 2 cut(s) 88, 1210
BceAI ACGGC 6 cut(s) 4, 55, 326, 338, 482, 553
BclI TGATCA 1 cut(s) 1095
BcnI CCSGG 2 cut(s) 202, 542
BcoDI GTCTC 2 cut(s) 510, 1025
BcuI ACTAGT 1 cut(s) 1106
BfaI CTAG 4 cut(s) 1082, 1107, 1433, 1441
BfmI CTRYAG 1 cut(s) 551
BfoI RGCGCY 1 cut(s) 342
BfuAI ACCTGC 1 cut(s) 794
BisI GCNGC 7 cut(s) 124, 154, 215, 218, 221, 297, 470
BlsI GCNGC 7 cut(s) 125, 155, 216, 219, 222, 298, 471
Bme1390I CCNGG 2 cut(s) 202, 542
Bme18I GGWCC 1 cut(s) 288
BmeT110I CYCGRG 1 cut(s) 176
BmgBI CACGTC 1 cut(s) 679
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 3 cut(s) 284, 340, 996
BmrFI CCNGG 2 cut(s) 202, 542
BmsI GCATC 1 cut(s) 66
BpmI CTGGAG 1 cut(s) 1013
BpuMI CCSGG 2 cut(s) 202, 542
BsaHI GRCGYC 2 cut(s) 339, 404
BsaJI CCNNGG 2 cut(s) 654, 756
BsaWI WCCGGW 1 cut(s) 489
BsaXI ACNNNNNCTCC 6 cut(s) 299, 329, 626, 656, 1068, 1098
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse118I RCCGGY 2 cut(s) 285, 743
Bse1I ACTGG 3 cut(s) 588, 838, 996
BseAI TCCGGA 1 cut(s) 489
BseDI CCNNGG 2 cut(s) 654, 756
BseGI GGATG 4 cut(s) 116, 883, 1350, 1360
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 3 cut(s) 588, 838, 996
BseRI GAGGAG 9 cut(s) 164, 187, 292, 379, 382, 385, 839, 842, 1198
BseXI GCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 139
BshFI GGCC 3 cut(s) 40, 205, 1151
BshNI GGYRCC 1 cut(s) 338
BsiHKAI GWGCWC 4 cut(s) 26, 110, 424, 861
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 6 cut(s) 202, 286, 490, 541, 744, 1074
BslFI GGGAC 1 cut(s) 831
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 2 cut(s) 510, 1025
BsmFI GGGAC 1 cut(s) 831
BsnI GGCC 3 cut(s) 40, 205, 1151
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 4 cut(s) 26, 110, 424, 861
Bsp13I TCCGGA 1 cut(s) 489
Bsp143I GATC 7 cut(s) 100, 180, 533, 574, 963, 1095, 1429
Bsp19I CCATGG 1 cut(s) 756
BspANI GGCC 3 cut(s) 40, 205, 1151
BspCNI CTCAG 1 cut(s) 96
BspEI TCCGGA 1 cut(s) 489
BspLI GGNNCC 3 cut(s) 284, 340, 996
BspMAI CTGCAG 1 cut(s) 555
BspMI ACCTGC 1 cut(s) 794
BspQI GCTCTTC 1 cut(s) 476
BspT107I GGYRCC 1 cut(s) 338
BsrBI CCGCTC 1 cut(s) 320
BsrFI RCCGGY 2 cut(s) 285, 743
BsrI ACTGG 3 cut(s) 588, 838, 996
BssAI RCCGGY 2 cut(s) 285, 743
BssECI CCNNGG 2 cut(s) 654, 756
BssMI GATC 7 cut(s) 100, 180, 533, 574, 963, 1095, 1429
BssNI GRCGYC 2 cut(s) 339, 404
BssT1I CCWWGG 1 cut(s) 756
Bst4CI ACNGT 3 cut(s) 163, 608, 626
Bst6I CTCTTC 5 cut(s) 476, 504, 721, 1059, 1236
BstACI GRCGYC 2 cut(s) 339, 404
BstDEI CTNAG 1 cut(s) 104
BstDSI CCRYGG 1 cut(s) 756
BstF5I GGATG 4 cut(s) 116, 883, 1350, 1360
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 1 cut(s) 341
BstKTI GATC 7 cut(s) 103, 183, 536, 577, 966, 1098, 1432
BstMAI GTCTC 2 cut(s) 510, 1025
BstMBI GATC 7 cut(s) 100, 180, 533, 574, 963, 1095, 1429
BstMWI GCNNNNNNNGC 8 cut(s) 76, 120, 150, 211, 220, 338, 565, 1087
BstSCI CCNGG 2 cut(s) 200, 540
BstSFI CTRYAG 1 cut(s) 551
BstV1I GCAGC 1 cut(s) 140
BsuRI GGCC 3 cut(s) 40, 205, 1151
BtgI CCRYGG 1 cut(s) 756
BtrI CACGTC 1 cut(s) 679
BtsCI GGATG 4 cut(s) 116, 883, 1350, 1360
BtsI GCAGTG 1 cut(s) 424
BtsIMutI CAGTG 1 cut(s) 424
BveI ACCTGC 1 cut(s) 794
CfoI GCGC 1 cut(s) 341
Cfr10I RCCGGY 2 cut(s) 285, 743
Cfr13I GGNCC 1 cut(s) 288
Csp6I GTAC 6 cut(s) 410, 440, 591, 600, 939, 1226
CviAII CATG 2 cut(s) 757, 955
CviQI GTAC 6 cut(s) 410, 440, 591, 600, 939, 1226
DdeI CTNAG 1 cut(s) 104
DinI GGCGCC 1 cut(s) 340
DpnI GATC 7 cut(s) 102, 182, 535, 576, 965, 1097, 1431
DpnII GATC 7 cut(s) 100, 180, 533, 574, 963, 1095, 1429
EaeI YGGCCR 1 cut(s) 203
Eam1104I CTCTTC 5 cut(s) 476, 504, 721, 1059, 1236
EarI CTCTTC 5 cut(s) 476, 504, 721, 1059, 1236
EciI GGCGGA 3 cut(s) 6, 698, 738
Ecl136II GAGCTC 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 756
Eco24I GRGCYC 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 288
Eco53kI GAGCTC 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 318
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 108
EcoRI GAATTC 1 cut(s) 1418
EcoT14I CCWWGG 1 cut(s) 756
EcoT38I GRGCYC 1 cut(s) 110
EgeI GGCGCC 1 cut(s) 340
EheI GGCGCC 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 756
FaeI CATG 2 cut(s) 760, 958
FaqI GGGAC 1 cut(s) 831
FatI CATG 2 cut(s) 756, 954
FauNDI CATATG 1 cut(s) 1143
FbaI TGATCA 1 cut(s) 1095
Fnu4HI GCNGC 7 cut(s) 124, 154, 215, 218, 221, 297, 470
FokI GGATG 4 cut(s) 103, 890, 1357, 1367
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 7 cut(s) 124, 154, 215, 218, 221, 297, 470
FspBI CTAG 4 cut(s) 1082, 1107, 1433, 1441
GlaI GCGC 1 cut(s) 340
GluI GCNGC 7 cut(s) 124, 154, 215, 218, 221, 297, 470
GsuI CTGGAG 1 cut(s) 1013
HaeII RGCGCY 1 cut(s) 342
HaeIII GGCC 3 cut(s) 40, 205, 1151
HapII CCGG 6 cut(s) 202, 286, 490, 541, 744, 1074
HhaI GCGC 1 cut(s) 341
Hin1I GRCGYC 2 cut(s) 339, 404
Hin1II CATG 2 cut(s) 760, 958
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HinfI GANTC 5 cut(s) 58, 253, 752, 972, 1259
HpaII CCGG 6 cut(s) 202, 286, 490, 541, 744, 1074
HphI GGTGA 5 cut(s) 758, 783, 1225, 1254, 1261
Hpy166II GTNNAC 1 cut(s) 701
Hpy188III TCNNGA 5 cut(s) 178, 250, 291, 490, 976
Hpy8I GTNNAC 1 cut(s) 701
Hpy99I CGWCG 3 cut(s) 282, 406, 680
HpyAV CCTTC 3 cut(s) 680, 929, 1141
HpyCH4III ACNGT 3 cut(s) 163, 608, 626
HpyCH4IV ACGT 3 cut(s) 404, 678, 1025
HpyCH4V TGCA 5 cut(s) 156, 367, 553, 958, 1141
HpyF10VI GCNNNNNNNGC 8 cut(s) 76, 120, 150, 211, 220, 338, 565, 1087
HpyF3I CTNAG 1 cut(s) 104
HpySE526I ACGT 3 cut(s) 404, 678, 1025
Hsp92I GRCGYC 2 cut(s) 339, 404
Hsp92II CATG 2 cut(s) 760, 958
HspAI GCGC 1 cut(s) 339
KasI GGCGCC 1 cut(s) 338
Kpn2I TCCGGA 1 cut(s) 489
Ksp22I TGATCA 1 cut(s) 1095
Kzo9I GATC 7 cut(s) 100, 180, 533, 574, 963, 1095, 1429
LguI GCTCTTC 1 cut(s) 476
LmnI GCTCC 4 cut(s) 113, 282, 556, 994
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 1 cut(s) 66
MaeI CTAG 4 cut(s) 1082, 1107, 1433, 1441
MaeII ACGT 3 cut(s) 404, 678, 1025
MaeIII GTNAC 2 cut(s) 10, 736
MalI GATC 7 cut(s) 102, 182, 535, 576, 965, 1097, 1431
MbiI CCGCTC 1 cut(s) 320
MboI GATC 7 cut(s) 100, 180, 533, 574, 963, 1095, 1429
MhlI GDGCHC 4 cut(s) 26, 110, 424, 861
MluCI AATT 6 cut(s) 30, 666, 1327, 1349, 1402, 1418
Mly113I GGCGCC 1 cut(s) 339
MmeI TCCRAC 3 cut(s) 301, 330, 1365
MroI TCCGGA 1 cut(s) 489
MroXI GAANNNNTTC 3 cut(s) 460, 485, 1418
MseI TTAA 3 cut(s) 348, 842, 1311
MspA1I CMGCKG 1 cut(s) 123
MspI CCGG 6 cut(s) 202, 286, 490, 541, 744, 1074
MspR9I CCNGG 2 cut(s) 202, 542
MwoI GCNNNNNNNGC 8 cut(s) 76, 120, 150, 211, 220, 338, 565, 1087
NarI GGCGCC 1 cut(s) 339
NciI CCSGG 2 cut(s) 202, 542
NcoI CCATGG 1 cut(s) 756
NdeI CATATG 1 cut(s) 1143
NdeII GATC 7 cut(s) 100, 180, 533, 574, 963, 1095, 1429
NlaIII CATG 2 cut(s) 760, 958
NlaIV GGNNCC 3 cut(s) 284, 340, 996
NmeAIII GCCGAG 2 cut(s) 66, 1299
PaeR7I CTCGAG 1 cut(s) 176
PaqCI CACCTGC 1 cut(s) 794
PciSI GCTCTTC 1 cut(s) 476
PdmI GAANNNNTTC 3 cut(s) 460, 485, 1418
PfeI GAWTC 5 cut(s) 58, 253, 752, 972, 1259
PflFI GACNNNGTC 1 cut(s) 521
PfoI TCCNGGA 1 cut(s) 540
PkrI GCNGC 7 cut(s) 125, 155, 216, 219, 222, 298, 471
PluTI GGCGCC 1 cut(s) 342
Psp124BI GAGCTC 1 cut(s) 110
PspN4I GGNNCC 3 cut(s) 284, 340, 996
PspPI GGNCC 1 cut(s) 288
PstI CTGCAG 1 cut(s) 555
PsyI GACNNNGTC 1 cut(s) 521
RsaI GTAC 6 cut(s) 411, 441, 592, 601, 940, 1227
RsaNI GTAC 6 cut(s) 410, 440, 591, 600, 939, 1226
SacI GAGCTC 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 476
SaqAI TTAA 3 cut(s) 348, 842, 1311
SatI GCNGC 7 cut(s) 124, 154, 215, 218, 221, 297, 470
Sau3AI GATC 7 cut(s) 100, 180, 533, 574, 963, 1095, 1429
Sau96I GGNCC 1 cut(s) 288
ScrFI CCNGG 2 cut(s) 202, 542
SduI GDGCHC 4 cut(s) 26, 110, 424, 861
SfaNI GCATC 1 cut(s) 66
SfcI CTRYAG 1 cut(s) 551
SfoI GGCGCC 1 cut(s) 340
Sfr274I CTCGAG 1 cut(s) 176
SinI GGWCC 1 cut(s) 288
SlaI CTCGAG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SpeI ACTAGT 1 cut(s) 1106
Sse9I AATT 6 cut(s) 30, 666, 1327, 1349, 1402, 1418
SspDI GGCGCC 1 cut(s) 338
SspMI CTAG 4 cut(s) 1082, 1107, 1433, 1441
SstI GAGCTC 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 200, 540
StyI CCWWGG 1 cut(s) 756
TaaI ACNGT 3 cut(s) 163, 608, 626
TaiI ACGT 3 cut(s) 407, 681, 1028
TaqI TCGA 9 cut(s) 177, 183, 454, 861, 928, 975, 1002, 1124, 1287
TaqII GACCGA 1 cut(s) 1062
TasI AATT 6 cut(s) 30, 666, 1327, 1349, 1402, 1418
TatI WGTACW 1 cut(s) 590
TauI GCSGC 6 cut(s) 126, 217, 220, 223, 299, 472
TfiI GAWTC 5 cut(s) 58, 253, 752, 972, 1259
Tru1I TTAA 3 cut(s) 348, 842, 1311
Tru9I TTAA 3 cut(s) 348, 842, 1311
TscAI CASTG 1 cut(s) 424
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 5 cut(s) 894, 1160, 1361, 1371, 1431
TspGWI ACGGA 2 cut(s) 295, 397
TspRI CASTG 1 cut(s) 424
Tth111I GACNNNGTC 1 cut(s) 521
VpaK11BI GGWCC 1 cut(s) 288
XapI RAATTY 2 cut(s) 30, 1418
XhoI CTCGAG 1 cut(s) 176
XmnI GAANNNNTTC 3 cut(s) 460, 485, 1418
XspI CTAG 4 cut(s) 1082, 1107, 1433, 1441
ZraI GACGTC 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.