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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G11780 AT4G23020 AT4G23020 |
| fragaria_vesca | FvH4_5g01430 |
| malus_domestica | MD04G1068300.v1.1 |
| prunus_persica | Prupe.5G089800_v2.0.a1 |
| pyrus_communis | pycom04g06170 |
| rosa_chinensis | RchiOBHm_Chr7g0199421 |
| rosa_laevigata | RLG00000003794 |
| rosa_multiflora | Rmu_sc0003890.1_g000015 |
| rosa_roxburghii | Rroxscaffold_3G00256740 |
| rosa_rugosa | Rorug07G0053800 |
| rosa_samantha | Rh7AG178900 Rh7BG182300 Rh7CG187500 Rh7DG181800 |
| rosa_wichuraiana | Rw7G015710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1145 |
| AatII | GACGTC | 1 cut(s) | 752 |
| Acc36I | ACCTGC | 2 cut(s) | 612, 1145 |
| AccB1I | GGYRCC | 1 cut(s) | 674 |
| AccBSI | CCGCTC | 1 cut(s) | 656 |
| AccII | CGCG | 1 cut(s) | 34 |
| AccIII | TCCGGA | 1 cut(s) | 834 |
| AcoI | YGGCCR | 1 cut(s) | 539 |
| AcsI | RAATTY | 4 cut(s) | 115, 366, 1301, 1769 |
| AcvI | CACGTG | 1 cut(s) | 21 |
| AcyI | GRCGYC | 2 cut(s) | 675, 749 |
| AfaI | GTAC | 5 cut(s) | 756, 937, 946, 1291, 1578 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 286, 537 |
| AflIII | ACRYGT | 1 cut(s) | 18 |
| AgsI | TTSAA | 6 cut(s) | 120, 215, 371, 466, 586, 1011 |
| AhlI | ACTAGT | 1 cut(s) | 1457 |
| AjiI | CACGTC | 1 cut(s) | 1024 |
| AjnI | CCWGG | 1 cut(s) | 285 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 764, 796, 1707, 1739 |
| Alw21I | GWGCWC | 6 cut(s) | 111, 195, 362, 446, 769, 1212 |
| Alw26I | GTCTC | 2 cut(s) | 855, 1376 |
| Ama87I | CYCGRG | 1 cut(s) | 512 |
| Aor13HI | TCCGGA | 1 cut(s) | 834 |
| AoxI | GGCC | 6 cut(s) | 23, 123, 288, 374, 539, 1500 |
| ApeKI | GCWGC | 6 cut(s) | 57, 238, 308, 489, 550, 787 |
| ApoI | RAATTY | 4 cut(s) | 115, 366, 1301, 1769 |
| AseI | ATTAAT | 1 cut(s) | 684 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 805, 830, 1769 |
| AspLEI | GCGC | 2 cut(s) | 34, 677 |
| AspS9I | GGNCC | 2 cut(s) | 24, 624 |
| AsuC2I | CCSGG | 2 cut(s) | 538, 887 |
| AsuHPI | GGTGA | 5 cut(s) | 1103, 1134, 1576, 1605, 1612 |
| AsuNHI | GCTAGC | 1 cut(s) | 53 |
| AvaI | CYCGRG | 1 cut(s) | 512 |
| AvaII | GGWCC | 1 cut(s) | 624 |
| BanI | GGYRCC | 1 cut(s) | 674 |
| BanII | GRGCYC | 2 cut(s) | 195, 446 |
| BbrPI | CACGTG | 1 cut(s) | 21 |
| Bbv12I | GWGCWC | 6 cut(s) | 111, 195, 362, 446, 769, 1212 |
| BbvI | GCAGC | 6 cut(s) | 44, 225, 295, 476, 562, 774 |
| BccI | CCATC | 4 cut(s) | 173, 424, 1382, 1561 |
| BceAI | ACGGC | 6 cut(s) | 89, 231, 340, 662, 674, 898 |
| BciT130I | CCWGG | 1 cut(s) | 287 |
| BclI | TGATCA | 1 cut(s) | 1446 |
| BcnI | CCSGG | 2 cut(s) | 538, 887 |
| BcoDI | GTCTC | 2 cut(s) | 855, 1376 |
| BcuI | ACTAGT | 1 cut(s) | 1457 |
| BfaI | CTAG | 6 cut(s) | 54, 305, 1433, 1458, 1784, 1792 |
| BfmI | CTRYAG | 2 cut(s) | 548, 896 |
| BfoI | RGCGCY | 1 cut(s) | 678 |
| BfuAI | ACCTGC | 2 cut(s) | 612, 1145 |
| Bme1390I | CCNGG | 3 cut(s) | 287, 538, 887 |
| Bme18I | GGWCC | 1 cut(s) | 624 |
| BmeT110I | CYCGRG | 1 cut(s) | 512 |
| BmgBI | CACGTC | 1 cut(s) | 1024 |
| BmgT120I | GGNCC | 2 cut(s) | 24, 624 |
| BmiI | GGNNCC | 2 cut(s) | 676, 1347 |
| BmrFI | CCNGG | 3 cut(s) | 287, 538, 887 |
| BmsI | GCATC | 2 cut(s) | 151, 402 |
| BmtI | GCTAGC | 1 cut(s) | 57 |
| BpmI | CTGGAG | 2 cut(s) | 269, 1364 |
| BpuMI | CCSGG | 2 cut(s) | 538, 887 |
| BsaAI | YACGTR | 1 cut(s) | 21 |
| BsaHI | GRCGYC | 2 cut(s) | 675, 749 |
| BsaJI | CCNNGG | 2 cut(s) | 999, 1101 |
| BsaWI | WCCGGW | 1 cut(s) | 834 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 635, 665, 971, 1001, 1419, 1449 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 286, 537 |
| Bse118I | RCCGGY | 1 cut(s) | 1088 |
| Bse1I | ACTGG | 2 cut(s) | 933, 1347 |
| Bse3DI | GCAATG | 1 cut(s) | 1380 |
| BseAI | TCCGGA | 1 cut(s) | 834 |
| BseBI | CCWGG | 1 cut(s) | 287 |
| BseDI | CCNNGG | 2 cut(s) | 999, 1101 |
| BseGI | GGATG | 5 cut(s) | 201, 452, 1234, 1701, 1711 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 286, 537 |
| BseMI | GCAATG | 1 cut(s) | 1380 |
| BseMII | CTCAG | 2 cut(s) | 180, 431 |
| BseNI | ACTGG | 2 cut(s) | 933, 1347 |
| BseXI | GCAGC | 6 cut(s) | 44, 225, 295, 476, 562, 774 |
| BsgI | GTGCAG | 2 cut(s) | 224, 475 |
| Bsh1236I | CGCG | 1 cut(s) | 34 |
| BshFI | GGCC | 6 cut(s) | 25, 125, 290, 376, 541, 1502 |
| BshNI | GGYRCC | 1 cut(s) | 674 |
| BsiHKAI | GWGCWC | 6 cut(s) | 111, 195, 362, 446, 769, 1212 |
| BsiHKCI | CYCGRG | 1 cut(s) | 512 |
| BsiSI | CCGG | 5 cut(s) | 538, 835, 886, 1089, 1425 |
| BslFI | GGGAC | 1 cut(s) | 1182 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 286, 537 |
| BsmAI | GTCTC | 2 cut(s) | 855, 1376 |
| BsmFI | GGGAC | 1 cut(s) | 1182 |
| BsnI | GGCC | 6 cut(s) | 25, 125, 290, 376, 541, 1502 |
| BsoBI | CYCGRG | 1 cut(s) | 512 |
| Bsp1286I | GDGCHC | 6 cut(s) | 111, 195, 362, 446, 769, 1212 |
| Bsp13I | TCCGGA | 1 cut(s) | 834 |
| Bsp143I | GATC | 8 cut(s) | 185, 436, 516, 878, 919, 1314, 1446, 1780 |
| Bsp19I | CCATGG | 1 cut(s) | 1101 |
| BspANI | GGCC | 6 cut(s) | 25, 125, 290, 376, 541, 1502 |
| BspCNI | CTCAG | 2 cut(s) | 181, 432 |
| BspEI | TCCGGA | 1 cut(s) | 834 |
| BspFNI | CGCG | 1 cut(s) | 34 |
| BspLI | GGNNCC | 2 cut(s) | 676, 1347 |
| BspMAI | CTGCAG | 2 cut(s) | 552, 900 |
| BspMI | ACCTGC | 2 cut(s) | 612, 1145 |
| BspOI | GCTAGC | 1 cut(s) | 57 |
| BspQI | GCTCTTC | 1 cut(s) | 821 |
| BspT107I | GGYRCC | 1 cut(s) | 674 |
| BsrBI | CCGCTC | 1 cut(s) | 656 |
| BsrDI | GCAATG | 1 cut(s) | 1380 |
| BsrFI | RCCGGY | 1 cut(s) | 1088 |
| BsrI | ACTGG | 2 cut(s) | 933, 1347 |
| BssAI | RCCGGY | 1 cut(s) | 1088 |
| BssECI | CCNNGG | 2 cut(s) | 999, 1101 |
| BssMI | GATC | 8 cut(s) | 185, 436, 516, 878, 919, 1314, 1446, 1780 |
| BssNI | GRCGYC | 2 cut(s) | 675, 749 |
| BssT1I | CCWWGG | 1 cut(s) | 1101 |
| Bst2UI | CCWGG | 1 cut(s) | 287 |
| Bst4CI | ACNGT | 4 cut(s) | 499, 953, 971, 1191 |
| Bst6I | CTCTTC | 5 cut(s) | 821, 849, 1066, 1410, 1587 |
| BstACI | GRCGYC | 2 cut(s) | 675, 749 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 709 |
| BstBAI | YACGTR | 1 cut(s) | 21 |
| BstC8I | GCNNGC | 2 cut(s) | 14, 55 |
| BstDEI | CTNAG | 2 cut(s) | 189, 440 |
| BstDSI | CCRYGG | 1 cut(s) | 1101 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 284 |
| BstF5I | GGATG | 5 cut(s) | 201, 452, 1234, 1701, 1711 |
| BstFNI | CGCG | 1 cut(s) | 34 |
| BstH2I | RGCGCY | 1 cut(s) | 678 |
| BstHHI | GCGC | 2 cut(s) | 34, 677 |
| BstKTI | GATC | 8 cut(s) | 188, 439, 519, 881, 922, 1317, 1449, 1783 |
| BstMAI | GTCTC | 2 cut(s) | 855, 1376 |
| BstMBI | GATC | 8 cut(s) | 185, 436, 516, 878, 919, 1314, 1446, 1780 |
| BstNI | CCWGG | 1 cut(s) | 287 |
| BstNSI | RCATGY | 1 cut(s) | 16 |
| BstSCI | CCNGG | 3 cut(s) | 285, 536, 885 |
| BstSFI | CTRYAG | 2 cut(s) | 548, 896 |
| BstUI | CGCG | 1 cut(s) | 34 |
| BstV1I | GCAGC | 6 cut(s) | 44, 225, 295, 476, 562, 774 |
| BsuRI | GGCC | 6 cut(s) | 25, 125, 290, 376, 541, 1502 |
| BtgI | CCRYGG | 1 cut(s) | 1101 |
| BtrI | CACGTC | 1 cut(s) | 1024 |
| BtsCI | GGATG | 5 cut(s) | 201, 452, 1234, 1701, 1711 |
| BtsI | GCAGTG | 2 cut(s) | 769, 809 |
| BtsIMutI | CAGTG | 2 cut(s) | 769, 809 |
| BveI | ACCTGC | 2 cut(s) | 612, 1145 |
| Cac8I | GCNNGC | 2 cut(s) | 14, 55 |
| CfoI | GCGC | 2 cut(s) | 34, 677 |
| Cfr10I | RCCGGY | 1 cut(s) | 1088 |
| Cfr13I | GGNCC | 2 cut(s) | 24, 624 |
| Csp6I | GTAC | 5 cut(s) | 755, 936, 945, 1290, 1577 |
| CviAII | CATG | 3 cut(s) | 13, 1102, 1306 |
| CviQI | GTAC | 5 cut(s) | 755, 936, 945, 1290, 1577 |
| DdeI | CTNAG | 2 cut(s) | 189, 440 |
| DinI | GGCGCC | 1 cut(s) | 676 |
| DpnI | GATC | 8 cut(s) | 187, 438, 518, 880, 921, 1316, 1448, 1782 |
| DpnII | GATC | 8 cut(s) | 185, 436, 516, 878, 919, 1314, 1446, 1780 |
| EaeI | YGGCCR | 1 cut(s) | 539 |
| Eam1104I | CTCTTC | 5 cut(s) | 821, 849, 1066, 1410, 1587 |
| EarI | CTCTTC | 5 cut(s) | 821, 849, 1066, 1410, 1587 |
| EciI | GGCGGA | 4 cut(s) | 91, 342, 1043, 1083 |
| Ecl136II | GAGCTC | 2 cut(s) | 193, 444 |
| Eco130I | CCWWGG | 1 cut(s) | 1101 |
| Eco24I | GRGCYC | 2 cut(s) | 195, 446 |
| Eco32I | GATATC | 1 cut(s) | 266 |
| Eco47I | GGWCC | 1 cut(s) | 624 |
| Eco53kI | GAGCTC | 2 cut(s) | 193, 444 |
| Eco72I | CACGTG | 1 cut(s) | 21 |
| Eco88I | CYCGRG | 1 cut(s) | 512 |
| EcoICRI | GAGCTC | 2 cut(s) | 193, 444 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 284 |
| EcoRI | GAATTC | 1 cut(s) | 1769 |
| EcoRII | CCWGG | 1 cut(s) | 285 |
| EcoRV | GATATC | 1 cut(s) | 266 |
| EcoT14I | CCWWGG | 1 cut(s) | 1101 |
| EcoT38I | GRGCYC | 2 cut(s) | 195, 446 |
| EgeI | GGCGCC | 1 cut(s) | 676 |
| EheI | GGCGCC | 1 cut(s) | 676 |
| ErhI | CCWWGG | 1 cut(s) | 1101 |
| FaeI | CATG | 3 cut(s) | 16, 1105, 1309 |
| FaqI | GGGAC | 1 cut(s) | 1182 |
| FatI | CATG | 3 cut(s) | 12, 1101, 1305 |
| FauNDI | CATATG | 1 cut(s) | 1494 |
| FbaI | TGATCA | 1 cut(s) | 1446 |
| FokI | GGATG | 5 cut(s) | 188, 439, 1241, 1708, 1718 |
| FriOI | GRGCYC | 2 cut(s) | 195, 446 |
| FspBI | CTAG | 6 cut(s) | 54, 305, 1433, 1458, 1784, 1792 |
| GlaI | GCGC | 2 cut(s) | 33, 676 |
| GsuI | CTGGAG | 2 cut(s) | 269, 1364 |
| HaeII | RGCGCY | 1 cut(s) | 678 |
| HaeIII | GGCC | 6 cut(s) | 25, 125, 290, 376, 541, 1502 |
| HapII | CCGG | 5 cut(s) | 538, 835, 886, 1089, 1425 |
| HhaI | GCGC | 2 cut(s) | 34, 677 |
| Hin1I | GRCGYC | 2 cut(s) | 675, 749 |
| Hin1II | CATG | 3 cut(s) | 16, 1105, 1309 |
| Hin6I | GCGC | 2 cut(s) | 32, 675 |
| HinP1I | GCGC | 2 cut(s) | 32, 675 |
| HinfI | GANTC | 5 cut(s) | 143, 394, 589, 1097, 1610 |
| HpaII | CCGG | 5 cut(s) | 538, 835, 886, 1089, 1425 |
| HphI | GGTGA | 5 cut(s) | 1103, 1134, 1576, 1605, 1612 |
| Hpy166II | GTNNAC | 3 cut(s) | 45, 1046, 1292 |
| Hpy188III | TCNNGA | 5 cut(s) | 514, 586, 627, 835, 1327 |
| Hpy8I | GTNNAC | 3 cut(s) | 45, 1046, 1292 |
| Hpy99I | CGWCG | 2 cut(s) | 751, 1025 |
| HpyAV | CCTTC | 7 cut(s) | 77, 230, 328, 481, 1025, 1280, 1492 |
| HpyCH4III | ACNGT | 4 cut(s) | 499, 953, 971, 1191 |
| HpyCH4IV | ACGT | 3 cut(s) | 20, 749, 1023 |
| HpyF3I | CTNAG | 2 cut(s) | 189, 440 |
| HpySE526I | ACGT | 3 cut(s) | 20, 749, 1023 |
| Hsp92I | GRCGYC | 2 cut(s) | 675, 749 |
| Hsp92II | CATG | 3 cut(s) | 16, 1105, 1309 |
| HspAI | GCGC | 2 cut(s) | 32, 675 |
| KasI | GGCGCC | 1 cut(s) | 674 |
| Kpn2I | TCCGGA | 1 cut(s) | 834 |
| Ksp22I | TGATCA | 1 cut(s) | 1446 |
| Kzo9I | GATC | 8 cut(s) | 185, 436, 516, 878, 919, 1314, 1446, 1780 |
| LguI | GCTCTTC | 1 cut(s) | 821 |
| LmnI | GCTCC | 5 cut(s) | 198, 449, 618, 901, 1345 |
| Lsp1109I | GCAGC | 6 cut(s) | 44, 225, 295, 476, 562, 774 |
| LweI | GCATC | 2 cut(s) | 151, 402 |
| MaeI | CTAG | 6 cut(s) | 54, 305, 1433, 1458, 1784, 1792 |
| MaeII | ACGT | 3 cut(s) | 20, 749, 1023 |
| MaeIII | GTNAC | 3 cut(s) | 95, 346, 1081 |
| MalI | GATC | 8 cut(s) | 187, 438, 518, 880, 921, 1316, 1448, 1782 |
| MbiI | CCGCTC | 1 cut(s) | 656 |
| MboI | GATC | 8 cut(s) | 185, 436, 516, 878, 919, 1314, 1446, 1780 |
| MhlI | GDGCHC | 6 cut(s) | 111, 195, 362, 446, 769, 1212 |
| MluCI | AATT | 9 cut(s) | 115, 366, 1011, 1301, 1322, 1678, 1700, 1753, 1769 |
| Mly113I | GGCGCC | 1 cut(s) | 675 |
| MmeI | TCCRAC | 2 cut(s) | 666, 1716 |
| MroI | TCCGGA | 1 cut(s) | 834 |
| MroXI | GAANNNNTTC | 3 cut(s) | 805, 830, 1769 |
| MseI | TTAA | 3 cut(s) | 684, 1193, 1662 |
| MspA1I | CMGCKG | 2 cut(s) | 208, 459 |
| MspI | CCGG | 5 cut(s) | 538, 835, 886, 1089, 1425 |
| MspR9I | CCNGG | 3 cut(s) | 287, 538, 887 |
| MvaI | CCWGG | 1 cut(s) | 287 |
| MvnI | CGCG | 1 cut(s) | 34 |
| NarI | GGCGCC | 1 cut(s) | 675 |
| NciI | CCSGG | 2 cut(s) | 538, 887 |
| NcoI | CCATGG | 1 cut(s) | 1101 |
| NdeI | CATATG | 1 cut(s) | 1494 |
| NdeII | GATC | 8 cut(s) | 185, 436, 516, 878, 919, 1314, 1446, 1780 |
| NheI | GCTAGC | 1 cut(s) | 53 |
| NlaIII | CATG | 3 cut(s) | 16, 1105, 1309 |
| NlaIV | GGNNCC | 2 cut(s) | 676, 1347 |
| NmeAIII | GCCGAG | 2 cut(s) | 151, 402 |
| NspI | RCATGY | 1 cut(s) | 16 |
| PaeI | GCATGC | 1 cut(s) | 16 |
| PaeR7I | CTCGAG | 1 cut(s) | 512 |
| PaqCI | CACCTGC | 1 cut(s) | 1145 |
| PciSI | GCTCTTC | 1 cut(s) | 821 |
| PdmI | GAANNNNTTC | 3 cut(s) | 805, 830, 1769 |
| PfeI | GAWTC | 5 cut(s) | 143, 394, 589, 1097, 1610 |
| PfoI | TCCNGGA | 1 cut(s) | 885 |
| PluTI | GGCGCC | 1 cut(s) | 678 |
| PmaCI | CACGTG | 1 cut(s) | 21 |
| PmlI | CACGTG | 1 cut(s) | 21 |
| Ppu21I | YACGTR | 1 cut(s) | 21 |
| PshBI | ATTAAT | 1 cut(s) | 684 |
| Psp124BI | GAGCTC | 2 cut(s) | 195, 446 |
| Psp6I | CCWGG | 1 cut(s) | 285 |
| PspCI | CACGTG | 1 cut(s) | 21 |
| PspGI | CCWGG | 1 cut(s) | 285 |
| PspN4I | GGNNCC | 2 cut(s) | 676, 1347 |
| PspPI | GGNCC | 2 cut(s) | 24, 624 |
| PstI | CTGCAG | 2 cut(s) | 552, 900 |
| RsaI | GTAC | 5 cut(s) | 756, 937, 946, 1291, 1578 |
| RsaNI | GTAC | 5 cut(s) | 755, 936, 945, 1290, 1577 |
| SacI | GAGCTC | 2 cut(s) | 195, 446 |
| SapI | GCTCTTC | 1 cut(s) | 821 |
| SaqAI | TTAA | 3 cut(s) | 684, 1193, 1662 |
| Sau3AI | GATC | 8 cut(s) | 185, 436, 516, 878, 919, 1314, 1446, 1780 |
| Sau96I | GGNCC | 2 cut(s) | 24, 624 |
| ScrFI | CCNGG | 3 cut(s) | 287, 538, 887 |
| SduI | GDGCHC | 6 cut(s) | 111, 195, 362, 446, 769, 1212 |
| SfaNI | GCATC | 2 cut(s) | 151, 402 |
| SfcI | CTRYAG | 2 cut(s) | 548, 896 |
| SfoI | GGCGCC | 1 cut(s) | 676 |
| Sfr274I | CTCGAG | 1 cut(s) | 512 |
| SinI | GGWCC | 1 cut(s) | 624 |
| SlaI | CTCGAG | 1 cut(s) | 512 |
| SmlI | CTYRAG | 1 cut(s) | 512 |
| SmoI | CTYRAG | 1 cut(s) | 512 |
| SpeI | ACTAGT | 1 cut(s) | 1457 |
| SphI | GCATGC | 1 cut(s) | 16 |
| Sse9I | AATT | 9 cut(s) | 115, 366, 1011, 1301, 1322, 1678, 1700, 1753, 1769 |
| SspDI | GGCGCC | 1 cut(s) | 674 |
| SspMI | CTAG | 6 cut(s) | 54, 305, 1433, 1458, 1784, 1792 |
| SstI | GAGCTC | 2 cut(s) | 195, 446 |
| StyD4I | CCNGG | 3 cut(s) | 285, 536, 885 |
| StyI | CCWWGG | 1 cut(s) | 1101 |
| TaaI | ACNGT | 4 cut(s) | 499, 953, 971, 1191 |
| TaiI | ACGT | 3 cut(s) | 23, 752, 1026 |
| TaqII | GACCGA | 1 cut(s) | 1413 |
| TasI | AATT | 9 cut(s) | 115, 366, 1011, 1301, 1322, 1678, 1700, 1753, 1769 |
| TatI | WGTACW | 1 cut(s) | 935 |
| TauI | GCSGC | 9 cut(s) | 211, 232, 302, 462, 483, 556, 559, 635, 817 |
| TfiI | GAWTC | 5 cut(s) | 143, 394, 589, 1097, 1610 |
| Tru1I | TTAA | 3 cut(s) | 684, 1193, 1662 |
| Tru9I | TTAA | 3 cut(s) | 684, 1193, 1662 |
| TscAI | CASTG | 2 cut(s) | 769, 816 |
| TseI | GCWGC | 6 cut(s) | 57, 238, 308, 489, 550, 787 |
| TspDTI | ATGAA | 7 cut(s) | 17, 1245, 1294, 1511, 1712, 1722, 1782 |
| TspGWI | ACGGA | 2 cut(s) | 631, 742 |
| TspRI | CASTG | 2 cut(s) | 769, 816 |
| VpaK11BI | GGWCC | 1 cut(s) | 624 |
| VspI | ATTAAT | 1 cut(s) | 684 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 284 |
| XapI | RAATTY | 4 cut(s) | 115, 366, 1301, 1769 |
| XceI | RCATGY | 1 cut(s) | 16 |
| XhoI | CTCGAG | 1 cut(s) | 512 |
| XmnI | GAANNNNTTC | 3 cut(s) | 805, 830, 1769 |
| XspI | CTAG | 6 cut(s) | 54, 305, 1433, 1458, 1784, 1792 |
| ZraI | GACGTC | 1 cut(s) | 750 |