RchiOBHm_Chr7g0199421

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013961
Physical Location & Seq
Forward (+)
17482194 .. 17486989
4796 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17845

Sequence Viewer

Length: 1455 bp
ATGGCTTTAGTAACTCCGCCGTGCTCGGAAATTCAAAGGCCGAGAAAATCAGCTATGATTCAGAAGAAGCCGATGATGCTCAAAGATTATCTGATGGACGATCTGAGCTCCTGCTCATCCAGCGGCTTCAAATCCTTCCCACGCCGCCAATGCTGCACAACCGTCCGATTTCTCCTCGAGATCGACCTCAAATCCTCCTCCCGGCCACAACTTCCGCCGCCGCCGCCGCAGTCCATTCACAACCACAACAACTTGAAGAATCAAAAGCCAAAGCAACTACTCGGACGGAGCAGGTCCAGAGCCGCCTCCTCCAACACCCTCTCCGCTCTCCAAAGAGCTTCGGGCGCCGTCATTAACGCCGTTAGAAACTTGCAGTTTCACACCGCCAAGTCCTCCTCCTCCTCCTCGACGTCGGTACAAAGCAGTGCTCGGAAAGGTGGCTTGGTACTGCTTCTGCCTCGAAGCATTTCACTGCGGCTGTGGAGGAAGAGCTTCCGGACAAAAGTAGAACAAGAAGAGAAAGACATAGTAAAGTGGAGATCGTTCCGGGAACTTCTACAGGAGCAAGATAAGCCGTCCGATCAGACCACCGCCAGTACAAAAAGTACCGACAGTAAAACCAACAGCAACAGTTGGGGGGAGAGCGAGTTTAGTTTGACCTCGGAGAGTTCAATTAGCAACGACGTGGCGGAAGGTAAAAATAGTTTACCAGAAAATAAGAAAGTCGGCGGAAGAGTTGGCGTAACAGCCGGTGAGGATTTCATGGAAACACCAACCACCACCAACTCCACCTCCACCTGCTCACCTCAAAACGCAGAGGTGTGGCTGAATAAAGAGGAGGAGAAAGAACAGTTAAGTCCCGTGTCGGTGCTCGATTGTCCATTTGAGGATGAAGATGATGAGAGTAGTAGTAGCTCTCCTTTTCGTTATAGACTTGCTCGAATGGAAGGTACACAACACAAATTCATGCAGAAGATCAGACGATTCGAGAACCTCGCTCAACTGGAGCCAATCGACTTGGAAAGACGAATGGCAATGTCAGAGACAGATGGAGATGACCGAGATAACAGAACCGAAGAGAAAGCCGGAGAGCTAGTGAAGCAGTTGATCATCAAAACTAGTAGTTATGCCCTATCGAACGATTTGGTAGTGCATATGAAGGCCGATAAGTTGGCGGTGGATTTGTTCAGAGAGCGGAGTGTCGAAAACAGCAAGGAAAATGTGGTGATGGGAGAGGTACTGAAAGTAGCAGAAGAGTGGGTGAATGGGGAATCACCAATGTTGTCGAGTTGGGAGGTCGAAAATGGTAGAAAAGTTTATGTTAATGATATGGACAATAATTTCTTTGGGAAGTGGATGAAGTTGGATGAACAAGAAAAAGAGGTTGGTTTGGAGTTGGAGGTTGAGGTATGGAATTATTTGCTGAATGAATTCCTGCTTGATCTAGTTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

484

Amino Acids

54.74

Weight (kDa)

5.85

Isoelectric Point (pI)

53.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11780 AT4G23020 AT4G23020
fragaria_vesca FvH4_5g01430
malus_domestica MD04G1068300.v1.1
prunus_persica Prupe.5G089800_v2.0.a1
pyrus_communis pycom04g06170
rosa_chinensis RchiOBHm_Chr7g0199421
rosa_laevigata RLG00000003794
rosa_multiflora Rmu_sc0003890.1_g000015
rosa_roxburghii Rroxscaffold_3G00256740
rosa_rugosa Rorug07G0053800
rosa_samantha Rh7AG178900 Rh7BG182300 Rh7CG187500 Rh7DG181800
rosa_wichuraiana Rw7G015710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 806
AatII GACGTC 1 cut(s) 413
Acc36I ACCTGC 2 cut(s) 282, 806
AccB1I GGYRCC 1 cut(s) 344
AccBSI CCGCTC 2 cut(s) 326, 1195
AccIII TCCGGA 1 cut(s) 495
AcoI YGGCCR 1 cut(s) 203
AcsI RAATTY 3 cut(s) 30, 962, 1430
AcyI GRCGYC 2 cut(s) 345, 410
AfaI GTAC 6 cut(s) 417, 447, 598, 607, 952, 1239
AfiI CCNNNNNNNGG 1 cut(s) 201
AgsI TTSAA 4 cut(s) 35, 130, 256, 672
AhlI ACTAGT 1 cut(s) 1118
AjiI CACGTC 1 cut(s) 685
AjuI GAANNNNNNNTTGG 4 cut(s) 425, 457, 1368, 1400
AluBI AGCT 7 cut(s) 53, 108, 338, 492, 915, 1093, 1452
AluI AGCT 7 cut(s) 53, 108, 338, 492, 915, 1093, 1452
Alw21I GWGCWC 4 cut(s) 26, 110, 430, 873
Alw26I GTCTC 1 cut(s) 1037
Ama87I CYCGRG 1 cut(s) 176
Aor13HI TCCGGA 1 cut(s) 495
AoxI GGCC 3 cut(s) 38, 203, 1161
ApeKI GCWGC 1 cut(s) 153
ApoI RAATTY 3 cut(s) 30, 962, 1430
Asp700I GAANNNNTTC 3 cut(s) 466, 491, 1430
AspLEI GCGC 1 cut(s) 347
AspS9I GGNCC 1 cut(s) 294
AsuC2I CCSGG 2 cut(s) 202, 548
AsuHPI GGTGA 5 cut(s) 764, 795, 1237, 1266, 1273
AvaI CYCGRG 1 cut(s) 176
AvaII GGWCC 1 cut(s) 294
BanI GGYRCC 1 cut(s) 344
BanII GRGCYC 1 cut(s) 110
Bbv12I GWGCWC 4 cut(s) 26, 110, 430, 873
BbvI GCAGC 1 cut(s) 140
BccI CCATC 3 cut(s) 88, 1043, 1222
BceAI ACGGC 4 cut(s) 4, 332, 344, 559
BclI TGATCA 1 cut(s) 1107
BcnI CCSGG 2 cut(s) 202, 548
BcoDI GTCTC 1 cut(s) 1037
BcuI ACTAGT 1 cut(s) 1118
BfaI CTAG 4 cut(s) 1094, 1119, 1445, 1453
BfmI CTRYAG 1 cut(s) 557
BfoI RGCGCY 1 cut(s) 348
BfuAI ACCTGC 2 cut(s) 282, 806
BisI GCNGC 9 cut(s) 124, 145, 154, 218, 221, 224, 227, 303, 476
BlsI GCNGC 9 cut(s) 125, 146, 155, 219, 222, 225, 228, 304, 477
Bme1390I CCNGG 2 cut(s) 202, 548
Bme18I GGWCC 1 cut(s) 294
BmeT110I CYCGRG 1 cut(s) 176
BmgBI CACGTC 1 cut(s) 685
BmgT120I GGNCC 1 cut(s) 294
BmiI GGNNCC 2 cut(s) 346, 1008
BmrFI CCNGG 2 cut(s) 202, 548
BmsI GCATC 1 cut(s) 66
BpmI CTGGAG 1 cut(s) 1025
BpuMI CCSGG 2 cut(s) 202, 548
BsaHI GRCGYC 2 cut(s) 345, 410
BsaJI CCNNGG 1 cut(s) 660
BsaWI WCCGGW 1 cut(s) 495
BsaXI ACNNNNNCTCC 8 cut(s) 305, 335, 632, 662, 776, 806, 1080, 1110
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse118I RCCGGY 1 cut(s) 749
Bse1I ACTGG 2 cut(s) 594, 1008
Bse3DI GCAATG 1 cut(s) 1041
BseAI TCCGGA 1 cut(s) 495
BseDI CCNNGG 1 cut(s) 660
BseGI GGATG 4 cut(s) 116, 895, 1362, 1372
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 1041
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 2 cut(s) 594, 1008
BseRI GAGGAG 9 cut(s) 164, 187, 298, 385, 388, 391, 394, 851, 854
BseXI GCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 139
BshFI GGCC 3 cut(s) 40, 205, 1163
BshNI GGYRCC 1 cut(s) 344
BsiHKAI GWGCWC 4 cut(s) 26, 110, 430, 873
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 5 cut(s) 202, 496, 547, 750, 1086
BslFI GGGAC 1 cut(s) 843
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 1037
BsmFI GGGAC 1 cut(s) 843
BsnI GGCC 3 cut(s) 40, 205, 1163
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 4 cut(s) 26, 110, 430, 873
Bsp13I TCCGGA 1 cut(s) 495
Bsp143I GATC 7 cut(s) 100, 180, 539, 580, 975, 1107, 1441
BspANI GGCC 3 cut(s) 40, 205, 1163
BspCNI CTCAG 1 cut(s) 96
BspEI TCCGGA 1 cut(s) 495
BspLI GGNNCC 2 cut(s) 346, 1008
BspMI ACCTGC 2 cut(s) 282, 806
BspQI GCTCTTC 1 cut(s) 482
BspT107I GGYRCC 1 cut(s) 344
BsrBI CCGCTC 2 cut(s) 326, 1195
BsrDI GCAATG 1 cut(s) 1041
BsrFI RCCGGY 1 cut(s) 749
BsrI ACTGG 2 cut(s) 594, 1008
BssAI RCCGGY 1 cut(s) 749
BssECI CCNNGG 1 cut(s) 660
BssMI GATC 7 cut(s) 100, 180, 539, 580, 975, 1107, 1441
BssNI GRCGYC 2 cut(s) 345, 410
Bst4CI ACNGT 4 cut(s) 163, 614, 632, 852
Bst6I CTCTTC 5 cut(s) 482, 510, 727, 1071, 1248
BstACI GRCGYC 2 cut(s) 345, 410
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 4 cut(s) 116, 895, 1362, 1372
BstH2I RGCGCY 1 cut(s) 348
BstHHI GCGC 1 cut(s) 347
BstKTI GATC 7 cut(s) 103, 183, 542, 583, 978, 1110, 1444
BstMAI GTCTC 1 cut(s) 1037
BstMBI GATC 7 cut(s) 100, 180, 539, 580, 975, 1107, 1441
BstMWI GCNNNNNNNGC 9 cut(s) 76, 120, 150, 153, 223, 226, 344, 571, 1099
BstSCI CCNGG 2 cut(s) 200, 546
BstSFI CTRYAG 1 cut(s) 557
BstV1I GCAGC 1 cut(s) 140
BsuRI GGCC 3 cut(s) 40, 205, 1163
BtrI CACGTC 1 cut(s) 685
BtsCI GGATG 4 cut(s) 116, 895, 1362, 1372
BtsI GCAGTG 2 cut(s) 430, 470
BtsIMutI CAGTG 2 cut(s) 430, 470
BveI ACCTGC 2 cut(s) 282, 806
CfoI GCGC 1 cut(s) 347
Cfr10I RCCGGY 1 cut(s) 749
Cfr13I GGNCC 1 cut(s) 294
Csp6I GTAC 6 cut(s) 416, 446, 597, 606, 951, 1238
CviAII CATG 2 cut(s) 763, 967
CviQI GTAC 6 cut(s) 416, 446, 597, 606, 951, 1238
DdeI CTNAG 1 cut(s) 104
DinI GGCGCC 1 cut(s) 346
DpnI GATC 7 cut(s) 102, 182, 541, 582, 977, 1109, 1443
DpnII GATC 7 cut(s) 100, 180, 539, 580, 975, 1107, 1441
EaeI YGGCCR 1 cut(s) 203
Eam1104I CTCTTC 5 cut(s) 482, 510, 727, 1071, 1248
EarI CTCTTC 5 cut(s) 482, 510, 727, 1071, 1248
EciI GGCGGA 4 cut(s) 6, 204, 704, 744
Ecl136II GAGCTC 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 294
Eco53kI GAGCTC 1 cut(s) 108
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 108
EcoRI GAATTC 1 cut(s) 1430
EcoT38I GRGCYC 1 cut(s) 110
EgeI GGCGCC 1 cut(s) 346
EheI GGCGCC 1 cut(s) 346
FaeI CATG 2 cut(s) 766, 970
FaqI GGGAC 1 cut(s) 843
FatI CATG 2 cut(s) 762, 966
FauNDI CATATG 1 cut(s) 1155
FbaI TGATCA 1 cut(s) 1107
Fnu4HI GCNGC 9 cut(s) 124, 145, 154, 218, 221, 224, 227, 303, 476
FokI GGATG 4 cut(s) 103, 902, 1369, 1379
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 9 cut(s) 124, 145, 154, 218, 221, 224, 227, 303, 476
FspBI CTAG 4 cut(s) 1094, 1119, 1445, 1453
GlaI GCGC 1 cut(s) 346
GluI GCNGC 9 cut(s) 124, 145, 154, 218, 221, 224, 227, 303, 476
GsuI CTGGAG 1 cut(s) 1025
HaeII RGCGCY 1 cut(s) 348
HaeIII GGCC 3 cut(s) 40, 205, 1163
HapII CCGG 5 cut(s) 202, 496, 547, 750, 1086
HhaI GCGC 1 cut(s) 347
Hin1I GRCGYC 2 cut(s) 345, 410
Hin1II CATG 2 cut(s) 766, 970
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HinfI GANTC 4 cut(s) 58, 259, 984, 1271
HpaII CCGG 5 cut(s) 202, 496, 547, 750, 1086
HphI GGTGA 5 cut(s) 764, 795, 1237, 1266, 1273
Hpy166II GTNNAC 2 cut(s) 707, 953
Hpy188III TCNNGA 4 cut(s) 178, 297, 496, 988
Hpy8I GTNNAC 2 cut(s) 707, 953
Hpy99I CGWCG 3 cut(s) 412, 415, 686
HpyAV CCTTC 4 cut(s) 145, 686, 941, 1153
HpyCH4III ACNGT 4 cut(s) 163, 614, 632, 852
HpyCH4IV ACGT 2 cut(s) 410, 684
HpyCH4V TGCA 4 cut(s) 156, 373, 970, 1153
HpyF10VI GCNNNNNNNGC 9 cut(s) 76, 120, 150, 153, 223, 226, 344, 571, 1099
HpyF3I CTNAG 1 cut(s) 104
HpySE526I ACGT 2 cut(s) 410, 684
Hsp92I GRCGYC 2 cut(s) 345, 410
Hsp92II CATG 2 cut(s) 766, 970
HspAI GCGC 1 cut(s) 345
KasI GGCGCC 1 cut(s) 344
Kpn2I TCCGGA 1 cut(s) 495
Ksp22I TGATCA 1 cut(s) 1107
Kzo9I GATC 7 cut(s) 100, 180, 539, 580, 975, 1107, 1441
LguI GCTCTTC 1 cut(s) 482
LmnI GCTCC 4 cut(s) 113, 288, 562, 1006
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 1 cut(s) 66
MaeI CTAG 4 cut(s) 1094, 1119, 1445, 1453
MaeII ACGT 2 cut(s) 410, 684
MaeIII GTNAC 2 cut(s) 10, 742
MalI GATC 7 cut(s) 102, 182, 541, 582, 977, 1109, 1443
MbiI CCGCTC 2 cut(s) 326, 1195
MboI GATC 7 cut(s) 100, 180, 539, 580, 975, 1107, 1441
MboII GAAGA 9 cut(s) 76, 268, 499, 527, 744, 905, 985, 1088, 1265
MhlI GDGCHC 4 cut(s) 26, 110, 430, 873
MluCI AATT 6 cut(s) 30, 672, 962, 1339, 1414, 1430
Mly113I GGCGCC 1 cut(s) 345
MmeI TCCRAC 3 cut(s) 336, 1344, 1377
MroI TCCGGA 1 cut(s) 495
MroXI GAANNNNTTC 3 cut(s) 466, 491, 1430
MseI TTAA 3 cut(s) 354, 854, 1323
MspA1I CMGCKG 1 cut(s) 123
MspI CCGG 5 cut(s) 202, 496, 547, 750, 1086
MspR9I CCNGG 2 cut(s) 202, 548
MwoI GCNNNNNNNGC 9 cut(s) 76, 120, 150, 153, 223, 226, 344, 571, 1099
NarI GGCGCC 1 cut(s) 345
NciI CCSGG 2 cut(s) 202, 548
NdeI CATATG 1 cut(s) 1155
NdeII GATC 7 cut(s) 100, 180, 539, 580, 975, 1107, 1441
NlaIII CATG 2 cut(s) 766, 970
NlaIV GGNNCC 2 cut(s) 346, 1008
NmeAIII GCCGAG 1 cut(s) 66
PaeR7I CTCGAG 1 cut(s) 176
PaqCI CACCTGC 1 cut(s) 806
PciSI GCTCTTC 1 cut(s) 482
PdmI GAANNNNTTC 3 cut(s) 466, 491, 1430
PfeI GAWTC 4 cut(s) 58, 259, 984, 1271
PfoI TCCNGGA 1 cut(s) 546
PkrI GCNGC 9 cut(s) 125, 146, 155, 219, 222, 225, 228, 304, 477
PluTI GGCGCC 1 cut(s) 348
Psp124BI GAGCTC 1 cut(s) 110
PspN4I GGNNCC 2 cut(s) 346, 1008
PspPI GGNCC 1 cut(s) 294
RsaI GTAC 6 cut(s) 417, 447, 598, 607, 952, 1239
RsaNI GTAC 6 cut(s) 416, 446, 597, 606, 951, 1238
SacI GAGCTC 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 482
SaqAI TTAA 3 cut(s) 354, 854, 1323
SatI GCNGC 9 cut(s) 124, 145, 154, 218, 221, 224, 227, 303, 476
Sau3AI GATC 7 cut(s) 100, 180, 539, 580, 975, 1107, 1441
Sau96I GGNCC 1 cut(s) 294
ScrFI CCNGG 2 cut(s) 202, 548
SduI GDGCHC 4 cut(s) 26, 110, 430, 873
SfaNI GCATC 1 cut(s) 66
SfcI CTRYAG 1 cut(s) 557
SfoI GGCGCC 1 cut(s) 346
Sfr274I CTCGAG 1 cut(s) 176
SinI GGWCC 1 cut(s) 294
SlaI CTCGAG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SpeI ACTAGT 1 cut(s) 1118
Sse9I AATT 6 cut(s) 30, 672, 962, 1339, 1414, 1430
SspDI GGCGCC 1 cut(s) 344
SspMI CTAG 4 cut(s) 1094, 1119, 1445, 1453
SstI GAGCTC 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 200, 546
TaaI ACNGT 4 cut(s) 163, 614, 632, 852
TaiI ACGT 2 cut(s) 413, 687
TaqII GACCGA 1 cut(s) 1074
TasI AATT 6 cut(s) 30, 672, 962, 1339, 1414, 1430
TatI WGTACW 1 cut(s) 596
TauI GCSGC 8 cut(s) 126, 147, 220, 223, 226, 229, 305, 478
TfiI GAWTC 4 cut(s) 58, 259, 984, 1271
Tru1I TTAA 3 cut(s) 354, 854, 1323
Tru9I TTAA 3 cut(s) 354, 854, 1323
TscAI CASTG 2 cut(s) 430, 477
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 7 cut(s) 751, 906, 955, 1172, 1373, 1383, 1443
TspGWI ACGGA 1 cut(s) 301
TspRI CASTG 2 cut(s) 430, 477
VpaK11BI GGWCC 1 cut(s) 294
XapI RAATTY 3 cut(s) 30, 962, 1430
XhoI CTCGAG 1 cut(s) 176
XmnI GAANNNNTTC 3 cut(s) 466, 491, 1430
XspI CTAG 4 cut(s) 1094, 1119, 1445, 1453
ZraI GACGTC 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.