Rh7DG181800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0013961
Physical Location & Seq
Forward (+)
16832632 .. 16837264
4633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG181800.1

Sequence Viewer

Length: 1437 bp
ATGGCTTTAGTAACTCCGCCGTGCTCGGAAATTCAAAGGCCGAGAAAATCAGCTATGATTCAGAAGAAGCCGATGATGCTCAAAGATTATCTGATGGACGATCTGAGCTCCTGCTCATCCAGCGGCTTCAAATCCTTCCCACGCCGCCAATGCTGCACAGCCGTCCGATTTCTCCTCGAGATCGACCTCAAATCCTCCTCCCGGCCACAACTGCCGCCGCCGCCGCAGTCCATTCACAACCACAACAACTTCAAGAATCAAAAGCCAAAGCAACTACTCGGACGGAGCAGGTCCAGAGCCGCCTCCTCCAACACCCTCTCCGCTCTCCAAAGAGCTTCGGGAGCCGTCATTAATGCCGTTAGAAACTTGCAGTTTCACACCGCCAAGTCCTCCTCCTCCTCGACGTCCGTACAAAGCAGTGCTCGGAAAGGTGGCTTGGTGCTGCTTCTGCCTCGAAGCATTTCACTGCGGCTGTGGAGGAAGAGCTTCCGGACAAAAGTAGAAGAAGAAGAGAGAGACATAGTAAAGTGGAGATCGTTCCGGGAACTTCTGCAGGAGCAAGATAAGCCGTCCGATCAGACCACCGCCAGTACAAAAAGTACCGACAGTAAAACCAACAGCAACAGTTGGGGGGAGAGCGAGTTTAGTTTGACCTCGGAGAGTTCAATTAGCAACGACATGGCGGAAGGTAAAAATAGTTTACCAGAAAATAAGAAAGTCGGCGTAACAGCCGGTGAGGATTCCATGGAAACACCAACCACCACCACCTCCACCTCCACCTGCTCACCTCAAAACGCAGAGGTGTGGCTGAATAAAGAGGAGGAGAAAGAACAGTTAAGTCCCGTGTCGGTGCTCGATTGTCCATTTGAGGATGAAGATGATGAGAGTAGTAGTAGCTCTCCTTTTCGTTATAGACTTGCTCGAATGGAAGGTACACAACACAAATTCATGCAGAAGATCAGACGATTCGAGAACCTCGCTCAACTGGAGCCAATCGACTTGGAAAGACGAATGGCAATGTCAGAGACAGATGGAGATGACCGAGATAACAGAACCGAAGAGAAAGCCGGAGAGCTAGTGAAGCAGTTGATCATCAAAACTAGTAGTTATGCCCTATCGAACGATTTGGTAGTGCATATGAAGGCCGATAAGTTGGCGGTGGATTTGTTCAGAGAGCGGAGTGTCGAAAACAGCAAGGAAAATGTGGTGATGGGAGAGGTACTGAAAGTAGCAGAAGAGTGGGTGAATGGGGAATCACCAATGTTGTCGAGTTGGGAGGTCGAAAATGGTAGAAAAGTTTATGTTAATGATATGGACAATAATTTCTTTGGGAAGTGGATGAAGTTGGATGAACAAGAAAAAGAGGTTGGTTTGGAGTTGGAGGTTGAGGTATGGAATTATTTGCTGAATGAATTCCTGCTTGATCTAGTTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

478

Amino Acids

54.18

Weight (kDa)

5.63

Isoelectric Point (pI)

54.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11780 AT4G23020 AT4G23020
fragaria_vesca FvH4_5g01430
malus_domestica MD04G1068300.v1.1
prunus_persica Prupe.5G089800_v2.0.a1
pyrus_communis pycom04g06170
rosa_chinensis RchiOBHm_Chr7g0199421
rosa_laevigata RLG00000003794
rosa_multiflora Rmu_sc0003890.1_g000015
rosa_roxburghii Rroxscaffold_3G00256740
rosa_rugosa Rorug07G0053800
rosa_samantha Rh7AG178900 Rh7BG182300 Rh7CG187500 Rh7DG181800
rosa_wichuraiana Rw7G015710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 788
AatII GACGTC 1 cut(s) 407
Acc36I ACCTGC 2 cut(s) 279, 788
AccBSI CCGCTC 2 cut(s) 323, 1177
AccIII TCCGGA 1 cut(s) 489
AcoI YGGCCR 1 cut(s) 203
AcsI RAATTY 3 cut(s) 30, 944, 1412
AcyI GRCGYC 1 cut(s) 404
AfaI GTAC 5 cut(s) 411, 592, 601, 934, 1221
AfiI CCNNNNNNNGG 1 cut(s) 201
AgsI TTSAA 4 cut(s) 35, 130, 253, 666
AhlI ACTAGT 1 cut(s) 1100
AjuI GAANNNNNNNTTGG 4 cut(s) 419, 451, 1350, 1382
AluBI AGCT 7 cut(s) 53, 108, 335, 486, 897, 1075, 1434
AluI AGCT 7 cut(s) 53, 108, 335, 486, 897, 1075, 1434
Alw21I GWGCWC 4 cut(s) 26, 110, 424, 855
Alw26I GTCTC 2 cut(s) 510, 1019
Ama87I CYCGRG 1 cut(s) 176
Aor13HI TCCGGA 1 cut(s) 489
AoxI GGCC 3 cut(s) 38, 203, 1143
ApeKI GCWGC 2 cut(s) 153, 442
ApoI RAATTY 3 cut(s) 30, 944, 1412
AseI ATTAAT 1 cut(s) 351
Asp700I GAANNNNTTC 3 cut(s) 460, 485, 1412
AspS9I GGNCC 1 cut(s) 291
AsuC2I CCSGG 2 cut(s) 202, 542
AsuHPI GGTGA 5 cut(s) 746, 777, 1219, 1248, 1255
AvaI CYCGRG 1 cut(s) 176
AvaII GGWCC 1 cut(s) 291
BanII GRGCYC 1 cut(s) 110
Bbv12I GWGCWC 4 cut(s) 26, 110, 424, 855
BbvI GCAGC 2 cut(s) 140, 429
BccI CCATC 3 cut(s) 88, 1025, 1204
BceAI ACGGC 5 cut(s) 4, 146, 329, 341, 553
BclI TGATCA 1 cut(s) 1089
BcnI CCSGG 2 cut(s) 202, 542
BcoDI GTCTC 2 cut(s) 510, 1019
BcuI ACTAGT 1 cut(s) 1100
BfaI CTAG 4 cut(s) 1076, 1101, 1427, 1435
BfmI CTRYAG 1 cut(s) 551
BfuAI ACCTGC 2 cut(s) 279, 788
Bme1390I CCNGG 2 cut(s) 202, 542
Bme18I GGWCC 1 cut(s) 291
BmeT110I CYCGRG 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 2 cut(s) 343, 990
BmrFI CCNGG 2 cut(s) 202, 542
BmsI GCATC 1 cut(s) 66
BpmI CTGGAG 1 cut(s) 1007
BpuMI CCSGG 2 cut(s) 202, 542
BsaHI GRCGYC 1 cut(s) 404
BsaJI CCNNGG 2 cut(s) 654, 744
BsaWI WCCGGW 1 cut(s) 489
BsaXI ACNNNNNCTCC 6 cut(s) 302, 332, 626, 656, 1062, 1092
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse118I RCCGGY 1 cut(s) 731
Bse1I ACTGG 2 cut(s) 588, 990
Bse3DI GCAATG 1 cut(s) 1023
BseAI TCCGGA 1 cut(s) 489
BseDI CCNNGG 2 cut(s) 654, 744
BseGI GGATG 4 cut(s) 116, 877, 1344, 1354
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 1023
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 2 cut(s) 588, 990
BseRI GAGGAG 8 cut(s) 164, 187, 295, 382, 385, 388, 833, 836
BseXI GCAGC 2 cut(s) 140, 429
BsgI GTGCAG 1 cut(s) 139
BshFI GGCC 3 cut(s) 40, 205, 1145
BsiHKAI GWGCWC 4 cut(s) 26, 110, 424, 855
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 5 cut(s) 202, 490, 541, 732, 1068
BslFI GGGAC 1 cut(s) 825
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 2 cut(s) 510, 1019
BsmFI GGGAC 1 cut(s) 825
BsnI GGCC 3 cut(s) 40, 205, 1145
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 4 cut(s) 26, 110, 424, 855
Bsp13I TCCGGA 1 cut(s) 489
Bsp143I GATC 7 cut(s) 100, 180, 533, 574, 957, 1089, 1423
Bsp19I CCATGG 1 cut(s) 744
BspANI GGCC 3 cut(s) 40, 205, 1145
BspCNI CTCAG 1 cut(s) 96
BspEI TCCGGA 1 cut(s) 489
BspLI GGNNCC 2 cut(s) 343, 990
BspMAI CTGCAG 1 cut(s) 555
BspMI ACCTGC 2 cut(s) 279, 788
BspQI GCTCTTC 1 cut(s) 476
BsrBI CCGCTC 2 cut(s) 323, 1177
BsrDI GCAATG 1 cut(s) 1023
BsrFI RCCGGY 1 cut(s) 731
BsrI ACTGG 2 cut(s) 588, 990
BssAI RCCGGY 1 cut(s) 731
BssECI CCNNGG 2 cut(s) 654, 744
BssMI GATC 7 cut(s) 100, 180, 533, 574, 957, 1089, 1423
BssNI GRCGYC 1 cut(s) 404
BssT1I CCWWGG 1 cut(s) 744
Bst4CI ACNGT 3 cut(s) 608, 626, 834
Bst6I CTCTTC 4 cut(s) 476, 504, 1053, 1230
BstACI GRCGYC 1 cut(s) 404
BstDEI CTNAG 1 cut(s) 104
BstDSI CCRYGG 1 cut(s) 744
BstF5I GGATG 4 cut(s) 116, 877, 1344, 1354
BstKTI GATC 7 cut(s) 103, 183, 536, 577, 960, 1092, 1426
BstMAI GTCTC 2 cut(s) 510, 1019
BstMBI GATC 7 cut(s) 100, 180, 533, 574, 957, 1089, 1423
BstSCI CCNGG 2 cut(s) 200, 540
BstSFI CTRYAG 1 cut(s) 551
BstV1I GCAGC 2 cut(s) 140, 429
BsuRI GGCC 3 cut(s) 40, 205, 1145
BtgI CCRYGG 1 cut(s) 744
BtsCI GGATG 4 cut(s) 116, 877, 1344, 1354
BtsI GCAGTG 2 cut(s) 424, 464
BtsIMutI CAGTG 2 cut(s) 424, 464
BveI ACCTGC 2 cut(s) 279, 788
Cfr10I RCCGGY 1 cut(s) 731
Cfr13I GGNCC 1 cut(s) 291
Csp6I GTAC 5 cut(s) 410, 591, 600, 933, 1220
CviAII CATG 3 cut(s) 679, 745, 949
CviQI GTAC 5 cut(s) 410, 591, 600, 933, 1220
DdeI CTNAG 1 cut(s) 104
DpnI GATC 7 cut(s) 102, 182, 535, 576, 959, 1091, 1425
DpnII GATC 7 cut(s) 100, 180, 533, 574, 957, 1089, 1423
EaeI YGGCCR 1 cut(s) 203
Eam1104I CTCTTC 4 cut(s) 476, 504, 1053, 1230
EarI CTCTTC 4 cut(s) 476, 504, 1053, 1230
EciI GGCGGA 2 cut(s) 6, 698
Ecl136II GAGCTC 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 744
Eco24I GRGCYC 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 291
Eco53kI GAGCTC 1 cut(s) 108
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 108
EcoRI GAATTC 1 cut(s) 1412
EcoT14I CCWWGG 1 cut(s) 744
EcoT38I GRGCYC 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 744
FaeI CATG 3 cut(s) 682, 748, 952
FaqI GGGAC 1 cut(s) 825
FatI CATG 3 cut(s) 678, 744, 948
FauNDI CATATG 1 cut(s) 1137
FbaI TGATCA 1 cut(s) 1089
FokI GGATG 4 cut(s) 103, 884, 1351, 1361
FriOI GRGCYC 1 cut(s) 110
FspBI CTAG 4 cut(s) 1076, 1101, 1427, 1435
GsuI CTGGAG 1 cut(s) 1007
HaeIII GGCC 3 cut(s) 40, 205, 1145
HapII CCGG 5 cut(s) 202, 490, 541, 732, 1068
Hin1I GRCGYC 1 cut(s) 404
Hin1II CATG 3 cut(s) 682, 748, 952
HinfI GANTC 5 cut(s) 58, 256, 740, 966, 1253
HpaII CCGG 5 cut(s) 202, 490, 541, 732, 1068
HphI GGTGA 5 cut(s) 746, 777, 1219, 1248, 1255
Hpy166II GTNNAC 2 cut(s) 701, 935
Hpy188III TCNNGA 6 cut(s) 178, 253, 294, 339, 490, 970
Hpy8I GTNNAC 2 cut(s) 701, 935
Hpy99I CGWCG 1 cut(s) 406
HpyAV CCTTC 4 cut(s) 145, 680, 923, 1135
HpyCH4III ACNGT 3 cut(s) 608, 626, 834
HpyCH4IV ACGT 1 cut(s) 404
HpyCH4V TGCA 5 cut(s) 156, 370, 553, 952, 1135
HpyF3I CTNAG 1 cut(s) 104
HpySE526I ACGT 1 cut(s) 404
Hsp92I GRCGYC 1 cut(s) 404
Hsp92II CATG 3 cut(s) 682, 748, 952
Kpn2I TCCGGA 1 cut(s) 489
Ksp22I TGATCA 1 cut(s) 1089
Kzo9I GATC 7 cut(s) 100, 180, 533, 574, 957, 1089, 1423
LguI GCTCTTC 1 cut(s) 476
LmnI GCTCC 5 cut(s) 113, 285, 341, 556, 988
Lsp1109I GCAGC 2 cut(s) 140, 429
LweI GCATC 1 cut(s) 66
MaeI CTAG 4 cut(s) 1076, 1101, 1427, 1435
MaeII ACGT 1 cut(s) 404
MaeIII GTNAC 2 cut(s) 10, 724
MalI GATC 7 cut(s) 102, 182, 535, 576, 959, 1091, 1425
MbiI CCGCTC 2 cut(s) 323, 1177
MboI GATC 7 cut(s) 100, 180, 533, 574, 957, 1089, 1423
MboII GAAGA 9 cut(s) 76, 493, 515, 518, 521, 887, 967, 1070, 1247
MhlI GDGCHC 4 cut(s) 26, 110, 424, 855
MluCI AATT 6 cut(s) 30, 666, 944, 1321, 1396, 1412
MmeI TCCRAC 3 cut(s) 333, 1326, 1359
MroI TCCGGA 1 cut(s) 489
MroXI GAANNNNTTC 3 cut(s) 460, 485, 1412
MseI TTAA 3 cut(s) 351, 836, 1305
MspA1I CMGCKG 1 cut(s) 123
MspI CCGG 5 cut(s) 202, 490, 541, 732, 1068
MspR9I CCNGG 2 cut(s) 202, 542
NciI CCSGG 2 cut(s) 202, 542
NcoI CCATGG 1 cut(s) 744
NdeI CATATG 1 cut(s) 1137
NdeII GATC 7 cut(s) 100, 180, 533, 574, 957, 1089, 1423
NlaIII CATG 3 cut(s) 682, 748, 952
NlaIV GGNNCC 2 cut(s) 343, 990
NmeAIII GCCGAG 1 cut(s) 66
PaeR7I CTCGAG 1 cut(s) 176
PaqCI CACCTGC 1 cut(s) 788
PciSI GCTCTTC 1 cut(s) 476
PdmI GAANNNNTTC 3 cut(s) 460, 485, 1412
PfeI GAWTC 5 cut(s) 58, 256, 740, 966, 1253
PfoI TCCNGGA 1 cut(s) 540
PshBI ATTAAT 1 cut(s) 351
Psp124BI GAGCTC 1 cut(s) 110
PspN4I GGNNCC 2 cut(s) 343, 990
PspPI GGNCC 1 cut(s) 291
PstI CTGCAG 1 cut(s) 555
RsaI GTAC 5 cut(s) 411, 592, 601, 934, 1221
RsaNI GTAC 5 cut(s) 410, 591, 600, 933, 1220
SacI GAGCTC 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 476
SaqAI TTAA 3 cut(s) 351, 836, 1305
Sau3AI GATC 7 cut(s) 100, 180, 533, 574, 957, 1089, 1423
Sau96I GGNCC 1 cut(s) 291
ScrFI CCNGG 2 cut(s) 202, 542
SduI GDGCHC 4 cut(s) 26, 110, 424, 855
SfaNI GCATC 1 cut(s) 66
SfcI CTRYAG 1 cut(s) 551
Sfr274I CTCGAG 1 cut(s) 176
SinI GGWCC 1 cut(s) 291
SlaI CTCGAG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SpeI ACTAGT 1 cut(s) 1100
Sse9I AATT 6 cut(s) 30, 666, 944, 1321, 1396, 1412
SspMI CTAG 4 cut(s) 1076, 1101, 1427, 1435
SstI GAGCTC 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 200, 540
StyI CCWWGG 1 cut(s) 744
TaaI ACNGT 3 cut(s) 608, 626, 834
TaiI ACGT 1 cut(s) 407
TaqII GACCGA 1 cut(s) 1056
TasI AATT 6 cut(s) 30, 666, 944, 1321, 1396, 1412
TatI WGTACW 1 cut(s) 590
TauI GCSGC 8 cut(s) 126, 147, 217, 220, 223, 226, 302, 472
TfiI GAWTC 5 cut(s) 58, 256, 740, 966, 1253
Tru1I TTAA 3 cut(s) 351, 836, 1305
Tru9I TTAA 3 cut(s) 351, 836, 1305
TscAI CASTG 2 cut(s) 424, 471
TseI GCWGC 2 cut(s) 153, 442
TspDTI ATGAA 6 cut(s) 888, 937, 1154, 1355, 1365, 1425
TspGWI ACGGA 2 cut(s) 298, 397
TspRI CASTG 2 cut(s) 424, 471
VpaK11BI GGWCC 1 cut(s) 291
VspI ATTAAT 1 cut(s) 351
XapI RAATTY 3 cut(s) 30, 944, 1412
XhoI CTCGAG 1 cut(s) 176
XmnI GAANNNNTTC 3 cut(s) 460, 485, 1412
XspI CTAG 4 cut(s) 1076, 1101, 1427, 1435
ZraI GACGTC 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.