Rh7AG178900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013961
Physical Location & Seq
Forward (+)
15820136 .. 15825096
4961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG178900.1

Sequence Viewer

Length: 1026 bp
ATGGCTTTAGTAACTCCGCCGTGCTCGGAAATTCAAAGGCCCAGAAAATCAGCTATGATTCAGAAGAAGCCGTTGATGCTCAAAGATTATCTGATGGACGATCTGAGCTCCTGCTCATCCAGCGGCTTCAAATCCTTCCCACGCCTCCAATGCTGCACAACCGTCCGATTTCTCCTCGAGATCGACCTCAAATCCTCCTCCCGGCCACAACTGCCGCCGCCGCAGTCCATTCACAACCACAACAACTTCAAGAATCAAAAGCCAAAGGAACTACTCCGAAGGAGCCGGTCCAGAGCCGTCTCCTCCAACACCCTCTCCGCTCTCCAAAGAGCTTCAGGCGCTGTCATTAACGCCGTCAGAAACTTGCAGTTTCACACCGCCAAGTCCTCCTCCTCCTCCTCGACGTCCGTACAAAGCAGTGCTCGGAAAGGTGGCTTGGTACTGCTTCTGCCTCGAAGCATTTCACGGCGGCTGTGGAGGAAGAGCTTCCGGACAAAAGTAGAAGAAGAAGAAGAGAAAGACATAGTAAAGTGGAGATCGTTCCGGGAACTTCTGCAGGAGCAAGATAAGCCGTCCGATCAGACCACCGCCAGTACAAAAAGTACCGACAGTAAAACCAACAGCAACAGTTGGGGGGAGAGCGAGTTTAGTTTGACCTCGGAGAGTTCAATTAGCAACGACGTGGCGGAAGGTAAAAATAGTTTACCAGAAAATAAGAAAGTCGGCGGAAGAGTTGGCGTAACAGCCGGTGAGGATTCCATTGAAACACCAACCACCACCACCACCACCTCCACCTGCTCACCTCAAAACGCAAAGGTGTGGCTGAATAAAGAGGAGGAGAAAGAACAGTTAAGTCCCGTGTCGGTGCTCGATTGTCCATTTGAGGATGAAGATGATGAGAGTAGTAGTAGCTCTCCTTTTCGTTATAGACTTGCTCGAATGGAAGGTCCGTTTCTTCTTCTTTTCTTCCTGATCTCCATTTTTTATTATTATTTTATTCTTGAAAAATGTCAATTGGCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

341

Amino Acids

38.32

Weight (kDa)

9.07

Isoelectric Point (pI)

68.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11780 AT4G23020 AT4G23020
fragaria_vesca FvH4_5g01430
malus_domestica MD04G1068300.v1.1
prunus_persica Prupe.5G089800_v2.0.a1
pyrus_communis pycom04g06170
rosa_chinensis RchiOBHm_Chr7g0199421
rosa_laevigata RLG00000003794
rosa_multiflora Rmu_sc0003890.1_g000015
rosa_roxburghii Rroxscaffold_3G00256740
rosa_rugosa Rorug07G0053800
rosa_samantha Rh7AG178900 Rh7BG182300 Rh7CG187500 Rh7DG181800
rosa_wichuraiana Rw7G015710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 803
AatII GACGTC 1 cut(s) 407
Acc36I ACCTGC 1 cut(s) 803
AccBSI CCGCTC 1 cut(s) 320
AccIII TCCGGA 1 cut(s) 489
AcoI YGGCCR 1 cut(s) 203
AcsI RAATTY 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 318
AcyI GRCGYC 1 cut(s) 404
AfaI GTAC 4 cut(s) 411, 441, 595, 604
AfiI CCNNNNNNNGG 1 cut(s) 201
AgsI TTSAA 6 cut(s) 35, 130, 250, 669, 764, 1004
AjiI CACGTC 1 cut(s) 682
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AluBI AGCT 5 cut(s) 53, 108, 332, 486, 912
AluI AGCT 5 cut(s) 53, 108, 332, 486, 912
Alw21I GWGCWC 4 cut(s) 26, 110, 424, 870
Alw26I GTCTC 1 cut(s) 304
AlwNI CAGNNNCTG 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 176
Aor13HI TCCGGA 1 cut(s) 489
AoxI GGCC 2 cut(s) 38, 203
ApeKI GCWGC 1 cut(s) 153
ApoI RAATTY 1 cut(s) 30
ArsI GACNNNNNNTTYG 2 cut(s) 931, 963
Asp700I GAANNNNTTC 2 cut(s) 460, 485
AspLEI GCGC 1 cut(s) 341
AspS9I GGNCC 3 cut(s) 39, 288, 947
AsuC2I CCSGG 2 cut(s) 202, 545
AsuHPI GGTGA 2 cut(s) 761, 792
AvaI CYCGRG 1 cut(s) 176
AvaII GGWCC 2 cut(s) 288, 947
BanII GRGCYC 1 cut(s) 110
Bbv12I GWGCWC 4 cut(s) 26, 110, 424, 870
BbvI GCAGC 1 cut(s) 140
BccI CCATC 1 cut(s) 88
BceAI ACGGC 6 cut(s) 4, 55, 281, 338, 482, 556
BcnI CCSGG 2 cut(s) 202, 545
BcoDI GTCTC 1 cut(s) 304
BfmI CTRYAG 1 cut(s) 554
BfoI RGCGCY 1 cut(s) 342
BfuAI ACCTGC 1 cut(s) 803
BisI GCNGC 6 cut(s) 124, 154, 215, 218, 221, 470
BlsI GCNGC 6 cut(s) 125, 155, 216, 219, 222, 471
Bme1390I CCNGG 2 cut(s) 202, 545
Bme18I GGWCC 2 cut(s) 288, 947
BmeT110I CYCGRG 1 cut(s) 176
BmgBI CACGTC 1 cut(s) 682
BmgT120I GGNCC 3 cut(s) 39, 288, 947
BmiI GGNNCC 1 cut(s) 284
BmrFI CCNGG 2 cut(s) 202, 545
BmsI GCATC 1 cut(s) 66
BpuMI CCSGG 2 cut(s) 202, 545
BsaHI GRCGYC 1 cut(s) 404
BsaJI CCNNGG 1 cut(s) 657
BsaWI WCCGGW 1 cut(s) 489
BsaXI ACNNNNNCTCC 4 cut(s) 299, 329, 629, 659
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse118I RCCGGY 2 cut(s) 285, 746
Bse1I ACTGG 1 cut(s) 591
BseAI TCCGGA 1 cut(s) 489
BseDI CCNNGG 1 cut(s) 657
BseGI GGATG 2 cut(s) 116, 892
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 591
BseRI GAGGAG 9 cut(s) 164, 187, 292, 379, 382, 385, 388, 848, 851
BseXI GCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 139
BshFI GGCC 2 cut(s) 40, 205
BsiHKAI GWGCWC 4 cut(s) 26, 110, 424, 870
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 5 cut(s) 202, 286, 490, 544, 747
BslFI GGGAC 1 cut(s) 840
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 304
BsmBI CGTCTC 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 840
BsnI GGCC 2 cut(s) 40, 205
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 4 cut(s) 26, 110, 424, 870
Bsp13I TCCGGA 1 cut(s) 489
Bsp143I GATC 5 cut(s) 100, 180, 536, 577, 972
BspANI GGCC 2 cut(s) 40, 205
BspCNI CTCAG 1 cut(s) 96
BspEI TCCGGA 1 cut(s) 489
BspLI GGNNCC 1 cut(s) 284
BspMAI CTGCAG 1 cut(s) 558
BspMI ACCTGC 1 cut(s) 803
BspQI GCTCTTC 1 cut(s) 476
BsrBI CCGCTC 1 cut(s) 320
BsrFI RCCGGY 2 cut(s) 285, 746
BsrI ACTGG 1 cut(s) 591
BssAI RCCGGY 2 cut(s) 285, 746
BssECI CCNNGG 1 cut(s) 657
BssMI GATC 5 cut(s) 100, 180, 536, 577, 972
BssNI GRCGYC 1 cut(s) 404
Bst4CI ACNGT 4 cut(s) 163, 611, 629, 849
Bst6I CTCTTC 3 cut(s) 476, 507, 724
BstACI GRCGYC 1 cut(s) 404
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 2 cut(s) 116, 892
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 1 cut(s) 341
BstKTI GATC 5 cut(s) 103, 183, 539, 580, 975
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 5 cut(s) 100, 180, 536, 577, 972
BstMWI GCNNNNNNNGC 7 cut(s) 76, 120, 150, 211, 220, 338, 568
BstSCI CCNGG 2 cut(s) 200, 543
BstSFI CTRYAG 1 cut(s) 554
BstV1I GCAGC 1 cut(s) 140
BsuRI GGCC 2 cut(s) 40, 205
BtrI CACGTC 1 cut(s) 682
BtsCI GGATG 2 cut(s) 116, 892
BtsI GCAGTG 1 cut(s) 424
BtsIMutI CAGTG 1 cut(s) 424
BveI ACCTGC 1 cut(s) 803
CaiI CAGNNNCTG 1 cut(s) 341
CfoI GCGC 1 cut(s) 341
Cfr10I RCCGGY 2 cut(s) 285, 746
Cfr13I GGNCC 3 cut(s) 39, 288, 947
Csp6I GTAC 4 cut(s) 410, 440, 594, 603
CviQI GTAC 4 cut(s) 410, 440, 594, 603
DdeI CTNAG 1 cut(s) 104
DpnI GATC 5 cut(s) 102, 182, 538, 579, 974
DpnII GATC 5 cut(s) 100, 180, 536, 577, 972
EaeI YGGCCR 1 cut(s) 203
Eam1104I CTCTTC 3 cut(s) 476, 507, 724
EarI CTCTTC 3 cut(s) 476, 507, 724
EciI GGCGGA 3 cut(s) 6, 701, 741
Ecl136II GAGCTC 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 110
Eco47I GGWCC 2 cut(s) 288, 947
Eco53kI GAGCTC 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 318
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 110
Esp3I CGTCTC 1 cut(s) 304
FaiI YATR 4 cut(s) 56, 524, 927, 1024
FaqI GGGAC 1 cut(s) 840
Fnu4HI GCNGC 6 cut(s) 124, 154, 215, 218, 221, 470
FokI GGATG 2 cut(s) 103, 899
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 6 cut(s) 124, 154, 215, 218, 221, 470
GlaI GCGC 1 cut(s) 340
GluI GCNGC 6 cut(s) 124, 154, 215, 218, 221, 470
HaeII RGCGCY 1 cut(s) 342
HaeIII GGCC 2 cut(s) 40, 205
HapII CCGG 5 cut(s) 202, 286, 490, 544, 747
HhaI GCGC 1 cut(s) 341
Hin1I GRCGYC 1 cut(s) 404
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HinfI GANTC 3 cut(s) 58, 253, 755
HpaII CCGG 5 cut(s) 202, 286, 490, 544, 747
HphI GGTGA 2 cut(s) 761, 792
Hpy166II GTNNAC 1 cut(s) 704
Hpy188III TCNNGA 6 cut(s) 178, 250, 291, 490, 970, 1001
Hpy8I GTNNAC 1 cut(s) 704
Hpy99I CGWCG 2 cut(s) 406, 683
HpyAV CCTTC 4 cut(s) 145, 273, 683, 938
HpyCH4III ACNGT 4 cut(s) 163, 611, 629, 849
HpyCH4IV ACGT 2 cut(s) 404, 681
HpyCH4V TGCA 3 cut(s) 156, 367, 556
HpyF10VI GCNNNNNNNGC 7 cut(s) 76, 120, 150, 211, 220, 338, 568
HpyF3I CTNAG 1 cut(s) 104
HpySE526I ACGT 2 cut(s) 404, 681
Hsp92I GRCGYC 1 cut(s) 404
HspAI GCGC 1 cut(s) 339
Kpn2I TCCGGA 1 cut(s) 489
Kzo9I GATC 5 cut(s) 100, 180, 536, 577, 972
LguI GCTCTTC 1 cut(s) 476
LmnI GCTCC 3 cut(s) 113, 282, 559
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 1 cut(s) 66
MaeII ACGT 2 cut(s) 404, 681
MaeIII GTNAC 2 cut(s) 10, 739
MalI GATC 5 cut(s) 102, 182, 538, 579, 974
MbiI CCGCTC 1 cut(s) 320
MboI GATC 5 cut(s) 100, 180, 536, 577, 972
MfeI CAATTG 1 cut(s) 1013
MhlI GDGCHC 4 cut(s) 26, 110, 424, 870
MluCI AATT 3 cut(s) 30, 669, 1013
MmeI TCCRAC 1 cut(s) 330
MroI TCCGGA 1 cut(s) 489
MroXI GAANNNNTTC 2 cut(s) 460, 485
MseI TTAA 2 cut(s) 348, 851
MspA1I CMGCKG 1 cut(s) 123
MspI CCGG 5 cut(s) 202, 286, 490, 544, 747
MspR9I CCNGG 2 cut(s) 202, 545
MunI CAATTG 1 cut(s) 1013
MwoI GCNNNNNNNGC 7 cut(s) 76, 120, 150, 211, 220, 338, 568
NciI CCSGG 2 cut(s) 202, 545
NdeII GATC 5 cut(s) 100, 180, 536, 577, 972
NlaIV GGNNCC 1 cut(s) 284
PaeR7I CTCGAG 1 cut(s) 176
PaqCI CACCTGC 1 cut(s) 803
PciSI GCTCTTC 1 cut(s) 476
PdmI GAANNNNTTC 2 cut(s) 460, 485
PfeI GAWTC 3 cut(s) 58, 253, 755
PfoI TCCNGGA 1 cut(s) 543
PkrI GCNGC 6 cut(s) 125, 155, 216, 219, 222, 471
Psp124BI GAGCTC 1 cut(s) 110
PspN4I GGNNCC 1 cut(s) 284
PspPI GGNCC 3 cut(s) 39, 288, 947
PstI CTGCAG 1 cut(s) 558
PstNI CAGNNNCTG 1 cut(s) 341
RsaI GTAC 4 cut(s) 411, 441, 595, 604
RsaNI GTAC 4 cut(s) 410, 440, 594, 603
SacI GAGCTC 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 476
SaqAI TTAA 2 cut(s) 348, 851
SatI GCNGC 6 cut(s) 124, 154, 215, 218, 221, 470
Sau3AI GATC 5 cut(s) 100, 180, 536, 577, 972
Sau96I GGNCC 3 cut(s) 39, 288, 947
ScrFI CCNGG 2 cut(s) 202, 545
SduI GDGCHC 4 cut(s) 26, 110, 424, 870
SfaNI GCATC 1 cut(s) 66
SfcI CTRYAG 1 cut(s) 554
Sfr274I CTCGAG 1 cut(s) 176
SinI GGWCC 2 cut(s) 288, 947
SlaI CTCGAG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 3 cut(s) 30, 669, 1013
SstI GAGCTC 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 200, 543
TaaI ACNGT 4 cut(s) 163, 611, 629, 849
TaiI ACGT 2 cut(s) 407, 684
TaqI TCGA 6 cut(s) 177, 183, 401, 454, 870, 937
TasI AATT 3 cut(s) 30, 669, 1013
TatI WGTACW 1 cut(s) 593
TauI GCSGC 5 cut(s) 126, 217, 220, 223, 472
TfiI GAWTC 3 cut(s) 58, 253, 755
Tru1I TTAA 2 cut(s) 348, 851
Tru9I TTAA 2 cut(s) 348, 851
TscAI CASTG 1 cut(s) 424
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 1 cut(s) 903
TspGWI ACGGA 2 cut(s) 397, 939
TspRI CASTG 1 cut(s) 424
VpaK11BI GGWCC 2 cut(s) 288, 947
XapI RAATTY 1 cut(s) 30
XhoI CTCGAG 1 cut(s) 176
XmnI GAANNNNTTC 2 cut(s) 460, 485
ZraI GACGTC 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.