Rw7G015710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0013961
Physical Location & Seq
Forward (+)
15943900 .. 15947775
3876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G015710.1

Sequence Viewer

Length: 1449 bp
ATGGCTTTAGTAACTCCGCCGTGCTCGGAAATTCAAAGGCCGAGAAAATCAGCTATGATTCAGAAGAAGCCGATGATGCTCAAAGATTATCTGATGGACGATCTGAGCTCCTGCTCATCCAGCGGCTTCAAATCCTTCCCACGCCGCCAATGCTGCACAGCCGTCCGATTTCTCCTCGAGATCGACCTCAAATCCTCCTCCCGGCCACAACTGCCGCCGCCGCCGCAGTCCATTCACAACCACAACAACTTCAAGAATCAAAAGCCAAAGCAACTACTCGGACGGAGCAGGTCCAGAGCCGCCTCCTCCAACACCCTCTCCGCTCTCCAAAGAGCTTCGGGCGCCGTCATTAATGCCGTTAGAAACTTGCAGTTTCACACTTCCAAGTCCTCCTCCTCCTCGACGTCCGTACAAAGCAGTGCTCGGAAAGGTGGCTTGGTGCTGCTTCTGCCTCGAAGCATTTCACTGCGGCTGTGGAGGAAGAGCTTCCGGACAAAAGTAGAAGAAGAAGAGAGAGACATAGTAAAGTGGAGATCGTTCCGGGAACTTCTGCAGGAGCAAGATAAGCCGTCCGATCAGACCACCGCCAGTACAAAAAGTACCGACAGTAAAACCAACAGCAACAGTTGGGGGGAGAGCGAGTTTAGTTTGACCTCGGAGAGTTCAATTAGCAACGACGTGGCGGAAGGTAAAAATAGTTTACCAGAAAATAAGAAAGTCGGCGGAAGAGTTGGCGTAACAGCCGGTGAGGATTCCATGGAAACACCAACCACCACCACCTCCACCTCCACCTGCTCACCTCAAAACGCAAAGGTGTGGCTGAATAAAGAGGAGGAGAAAGAACAGTTAAGTCCCGTGTCGGTGCTCGATTGTCCATTTGAGGATGAAGATGACGAGAGTAGTAGTAGCTCTCCTTTTCGTTATAGACTTGCTCGAATGGAAGGTACACAACACAAATTCATGCAGAAGATCAGACGATTCGAGAACCTCGCTCAACTGGAGCCAATCGACTTGGAAAGACGAATGGCAATGTCAGAGACAGATGGAGATGACCGAGATAACAGAACCGAAGAGAAAGCCGGAGAGCTAGTGAAGCAGTTGATCATCAAAACTAGTAGTTATGCCCTGTCGAACGATTTGGTAGTGCATATGAAGGCCGATAAGTTGGCGGTGGATTTGTTCAGAGAGAGGAGTGTCGAAAACAGCAAGGAAAATGTGGTGATGGGAGAGGTACTGAAAGTAGCAGAAGAGTGGGTGAATGGGGAATCACCAATGTTGTCGAGTTGGGAGGTCGAAAATGGTAGAAAAGTTTATGTTAATGATATGGACAATAATTTCTTTGGGAAGTGGATGAAATTGGATGAACAAGAAAAAGAGGTTGGTTTGGAGTTGGAGGTTGAGGTATGGAATTATTTGCTGAATGAATTCCTGCTTGATCTAGTTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

482

Amino Acids

54.53

Weight (kDa)

5.98

Isoelectric Point (pI)

53.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11780 AT4G23020 AT4G23020
fragaria_vesca FvH4_5g01430
malus_domestica MD04G1068300.v1.1
prunus_persica Prupe.5G089800_v2.0.a1
pyrus_communis pycom04g06170
rosa_chinensis RchiOBHm_Chr7g0199421
rosa_laevigata RLG00000003794
rosa_multiflora Rmu_sc0003890.1_g000015
rosa_roxburghii Rroxscaffold_3G00256740
rosa_rugosa Rorug07G0053800
rosa_samantha Rh7AG178900 Rh7BG182300 Rh7CG187500 Rh7DG181800
rosa_wichuraiana Rw7G015710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 800
AatII GACGTC 1 cut(s) 407
Acc36I ACCTGC 2 cut(s) 279, 800
AccB1I GGYRCC 1 cut(s) 341
AccBSI CCGCTC 1 cut(s) 323
AccIII TCCGGA 1 cut(s) 489
AcoI YGGCCR 1 cut(s) 203
AcsI RAATTY 3 cut(s) 30, 956, 1424
AcyI GRCGYC 2 cut(s) 342, 404
AfaI GTAC 5 cut(s) 411, 592, 601, 946, 1233
AfiI CCNNNNNNNGG 1 cut(s) 201
AgsI TTSAA 4 cut(s) 35, 130, 253, 666
AhlI ACTAGT 1 cut(s) 1112
AjiI CACGTC 1 cut(s) 679
AjuI GAANNNNNNNTTGG 4 cut(s) 419, 451, 1362, 1394
AluBI AGCT 7 cut(s) 53, 108, 335, 486, 909, 1087, 1446
AluI AGCT 7 cut(s) 53, 108, 335, 486, 909, 1087, 1446
Alw21I GWGCWC 4 cut(s) 26, 110, 424, 867
Alw26I GTCTC 2 cut(s) 510, 1031
Ama87I CYCGRG 1 cut(s) 176
Aor13HI TCCGGA 1 cut(s) 489
AoxI GGCC 3 cut(s) 38, 203, 1155
ApeKI GCWGC 2 cut(s) 153, 442
ApoI RAATTY 3 cut(s) 30, 956, 1424
AseI ATTAAT 1 cut(s) 351
Asp700I GAANNNNTTC 3 cut(s) 460, 485, 1424
AspLEI GCGC 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 291
AsuC2I CCSGG 2 cut(s) 202, 542
AsuHPI GGTGA 5 cut(s) 758, 789, 1231, 1260, 1267
AvaI CYCGRG 1 cut(s) 176
AvaII GGWCC 1 cut(s) 291
BanI GGYRCC 1 cut(s) 341
BanII GRGCYC 1 cut(s) 110
Bbv12I GWGCWC 4 cut(s) 26, 110, 424, 867
BbvI GCAGC 2 cut(s) 140, 429
BccI CCATC 3 cut(s) 88, 1037, 1216
BceAI ACGGC 5 cut(s) 4, 146, 329, 341, 553
BclI TGATCA 1 cut(s) 1101
BcnI CCSGG 2 cut(s) 202, 542
BcoDI GTCTC 2 cut(s) 510, 1031
BcuI ACTAGT 1 cut(s) 1112
BfaI CTAG 4 cut(s) 1088, 1113, 1439, 1447
BfmI CTRYAG 1 cut(s) 551
BfoI RGCGCY 1 cut(s) 345
BfuAI ACCTGC 2 cut(s) 279, 800
Bme1390I CCNGG 2 cut(s) 202, 542
Bme18I GGWCC 1 cut(s) 291
BmeT110I CYCGRG 1 cut(s) 176
BmgBI CACGTC 1 cut(s) 679
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 2 cut(s) 343, 1002
BmrFI CCNGG 2 cut(s) 202, 542
BmsI GCATC 1 cut(s) 66
BpmI CTGGAG 1 cut(s) 1019
BpuMI CCSGG 2 cut(s) 202, 542
BsaHI GRCGYC 2 cut(s) 342, 404
BsaJI CCNNGG 2 cut(s) 654, 756
BsaWI WCCGGW 1 cut(s) 489
BsaXI ACNNNNNCTCC 6 cut(s) 302, 332, 626, 656, 1074, 1104
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse118I RCCGGY 1 cut(s) 743
Bse1I ACTGG 2 cut(s) 588, 1002
Bse3DI GCAATG 1 cut(s) 1035
BseAI TCCGGA 1 cut(s) 489
BseDI CCNNGG 2 cut(s) 654, 756
BseGI GGATG 4 cut(s) 116, 889, 1356, 1366
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 1035
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 2 cut(s) 588, 1002
BseRI GAGGAG 9 cut(s) 164, 187, 295, 382, 385, 388, 845, 848, 1204
BseXI GCAGC 2 cut(s) 140, 429
BsgI GTGCAG 1 cut(s) 139
BshFI GGCC 3 cut(s) 40, 205, 1157
BshNI GGYRCC 1 cut(s) 341
BsiHKAI GWGCWC 4 cut(s) 26, 110, 424, 867
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 5 cut(s) 202, 490, 541, 744, 1080
BslFI GGGAC 1 cut(s) 837
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 2 cut(s) 510, 1031
BsmFI GGGAC 1 cut(s) 837
BsnI GGCC 3 cut(s) 40, 205, 1157
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 4 cut(s) 26, 110, 424, 867
Bsp13I TCCGGA 1 cut(s) 489
Bsp143I GATC 7 cut(s) 100, 180, 533, 574, 969, 1101, 1435
Bsp19I CCATGG 1 cut(s) 756
BspANI GGCC 3 cut(s) 40, 205, 1157
BspCNI CTCAG 1 cut(s) 96
BspEI TCCGGA 1 cut(s) 489
BspLI GGNNCC 2 cut(s) 343, 1002
BspMAI CTGCAG 1 cut(s) 555
BspMI ACCTGC 2 cut(s) 279, 800
BspQI GCTCTTC 1 cut(s) 476
BspT107I GGYRCC 1 cut(s) 341
BsrBI CCGCTC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 1035
BsrFI RCCGGY 1 cut(s) 743
BsrI ACTGG 2 cut(s) 588, 1002
BssAI RCCGGY 1 cut(s) 743
BssECI CCNNGG 2 cut(s) 654, 756
BssMI GATC 7 cut(s) 100, 180, 533, 574, 969, 1101, 1435
BssNI GRCGYC 2 cut(s) 342, 404
BssT1I CCWWGG 1 cut(s) 756
Bst4CI ACNGT 3 cut(s) 608, 626, 846
Bst6I CTCTTC 5 cut(s) 476, 504, 721, 1065, 1242
BstACI GRCGYC 2 cut(s) 342, 404
BstDEI CTNAG 1 cut(s) 104
BstDSI CCRYGG 1 cut(s) 756
BstF5I GGATG 4 cut(s) 116, 889, 1356, 1366
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 7 cut(s) 103, 183, 536, 577, 972, 1104, 1438
BstMAI GTCTC 2 cut(s) 510, 1031
BstMBI GATC 7 cut(s) 100, 180, 533, 574, 969, 1101, 1435
BstSCI CCNGG 2 cut(s) 200, 540
BstSFI CTRYAG 1 cut(s) 551
BstV1I GCAGC 2 cut(s) 140, 429
BsuRI GGCC 3 cut(s) 40, 205, 1157
BtgI CCRYGG 1 cut(s) 756
BtrI CACGTC 1 cut(s) 679
BtsCI GGATG 4 cut(s) 116, 889, 1356, 1366
BtsI GCAGTG 2 cut(s) 424, 464
BtsIMutI CAGTG 2 cut(s) 424, 464
BveI ACCTGC 2 cut(s) 279, 800
CfoI GCGC 1 cut(s) 344
Cfr10I RCCGGY 1 cut(s) 743
Cfr13I GGNCC 1 cut(s) 291
Csp6I GTAC 5 cut(s) 410, 591, 600, 945, 1232
CviAII CATG 2 cut(s) 757, 961
CviQI GTAC 5 cut(s) 410, 591, 600, 945, 1232
DdeI CTNAG 1 cut(s) 104
DinI GGCGCC 1 cut(s) 343
DpnI GATC 7 cut(s) 102, 182, 535, 576, 971, 1103, 1437
DpnII GATC 7 cut(s) 100, 180, 533, 574, 969, 1101, 1435
EaeI YGGCCR 1 cut(s) 203
Eam1104I CTCTTC 5 cut(s) 476, 504, 721, 1065, 1242
EarI CTCTTC 5 cut(s) 476, 504, 721, 1065, 1242
EciI GGCGGA 3 cut(s) 6, 698, 738
Ecl136II GAGCTC 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 756
Eco24I GRGCYC 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 291
Eco53kI GAGCTC 1 cut(s) 108
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 108
EcoRI GAATTC 1 cut(s) 1424
EcoT14I CCWWGG 1 cut(s) 756
EcoT38I GRGCYC 1 cut(s) 110
EgeI GGCGCC 1 cut(s) 343
EheI GGCGCC 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 756
FaeI CATG 2 cut(s) 760, 964
FaqI GGGAC 1 cut(s) 837
FatI CATG 2 cut(s) 756, 960
FauNDI CATATG 1 cut(s) 1149
FbaI TGATCA 1 cut(s) 1101
FokI GGATG 4 cut(s) 103, 896, 1363, 1373
FriOI GRGCYC 1 cut(s) 110
FspBI CTAG 4 cut(s) 1088, 1113, 1439, 1447
GlaI GCGC 1 cut(s) 343
GsuI CTGGAG 1 cut(s) 1019
HaeII RGCGCY 1 cut(s) 345
HaeIII GGCC 3 cut(s) 40, 205, 1157
HapII CCGG 5 cut(s) 202, 490, 541, 744, 1080
HhaI GCGC 1 cut(s) 344
Hin1I GRCGYC 2 cut(s) 342, 404
Hin1II CATG 2 cut(s) 760, 964
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HinfI GANTC 5 cut(s) 58, 256, 752, 978, 1265
HpaII CCGG 5 cut(s) 202, 490, 541, 744, 1080
HphI GGTGA 5 cut(s) 758, 789, 1231, 1260, 1267
Hpy166II GTNNAC 2 cut(s) 701, 947
Hpy188III TCNNGA 5 cut(s) 178, 253, 294, 490, 982
Hpy8I GTNNAC 2 cut(s) 701, 947
Hpy99I CGWCG 2 cut(s) 406, 680
HpyAV CCTTC 4 cut(s) 145, 680, 935, 1147
HpyCH4III ACNGT 3 cut(s) 608, 626, 846
HpyCH4IV ACGT 2 cut(s) 404, 678
HpyCH4V TGCA 5 cut(s) 156, 370, 553, 964, 1147
HpyF3I CTNAG 1 cut(s) 104
HpySE526I ACGT 2 cut(s) 404, 678
Hsp92I GRCGYC 2 cut(s) 342, 404
Hsp92II CATG 2 cut(s) 760, 964
HspAI GCGC 1 cut(s) 342
KasI GGCGCC 1 cut(s) 341
Kpn2I TCCGGA 1 cut(s) 489
Ksp22I TGATCA 1 cut(s) 1101
Kzo9I GATC 7 cut(s) 100, 180, 533, 574, 969, 1101, 1435
LguI GCTCTTC 1 cut(s) 476
LmnI GCTCC 4 cut(s) 113, 285, 556, 1000
Lsp1109I GCAGC 2 cut(s) 140, 429
LweI GCATC 1 cut(s) 66
MaeI CTAG 4 cut(s) 1088, 1113, 1439, 1447
MaeII ACGT 2 cut(s) 404, 678
MaeIII GTNAC 2 cut(s) 10, 736
MalI GATC 7 cut(s) 102, 182, 535, 576, 971, 1103, 1437
MbiI CCGCTC 1 cut(s) 323
MboI GATC 7 cut(s) 100, 180, 533, 574, 969, 1101, 1435
MhlI GDGCHC 4 cut(s) 26, 110, 424, 867
MluCI AATT 7 cut(s) 30, 666, 956, 1333, 1355, 1408, 1424
Mly113I GGCGCC 1 cut(s) 342
MmeI TCCRAC 2 cut(s) 333, 1371
MroI TCCGGA 1 cut(s) 489
MroXI GAANNNNTTC 3 cut(s) 460, 485, 1424
MseI TTAA 3 cut(s) 351, 848, 1317
MspA1I CMGCKG 1 cut(s) 123
MspI CCGG 5 cut(s) 202, 490, 541, 744, 1080
MspR9I CCNGG 2 cut(s) 202, 542
NarI GGCGCC 1 cut(s) 342
NciI CCSGG 2 cut(s) 202, 542
NcoI CCATGG 1 cut(s) 756
NdeI CATATG 1 cut(s) 1149
NdeII GATC 7 cut(s) 100, 180, 533, 574, 969, 1101, 1435
NlaIII CATG 2 cut(s) 760, 964
NlaIV GGNNCC 2 cut(s) 343, 1002
NmeAIII GCCGAG 1 cut(s) 66
PaeR7I CTCGAG 1 cut(s) 176
PaqCI CACCTGC 1 cut(s) 800
PciSI GCTCTTC 1 cut(s) 476
PdmI GAANNNNTTC 3 cut(s) 460, 485, 1424
PfeI GAWTC 5 cut(s) 58, 256, 752, 978, 1265
PfoI TCCNGGA 1 cut(s) 540
PluTI GGCGCC 1 cut(s) 345
PshBI ATTAAT 1 cut(s) 351
Psp124BI GAGCTC 1 cut(s) 110
PspN4I GGNNCC 2 cut(s) 343, 1002
PspPI GGNCC 1 cut(s) 291
PstI CTGCAG 1 cut(s) 555
RsaI GTAC 5 cut(s) 411, 592, 601, 946, 1233
RsaNI GTAC 5 cut(s) 410, 591, 600, 945, 1232
SacI GAGCTC 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 476
SaqAI TTAA 3 cut(s) 351, 848, 1317
Sau3AI GATC 7 cut(s) 100, 180, 533, 574, 969, 1101, 1435
Sau96I GGNCC 1 cut(s) 291
ScrFI CCNGG 2 cut(s) 202, 542
SduI GDGCHC 4 cut(s) 26, 110, 424, 867
SfaNI GCATC 1 cut(s) 66
SfcI CTRYAG 1 cut(s) 551
SfoI GGCGCC 1 cut(s) 343
Sfr274I CTCGAG 1 cut(s) 176
SinI GGWCC 1 cut(s) 291
SlaI CTCGAG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SpeI ACTAGT 1 cut(s) 1112
Sse9I AATT 7 cut(s) 30, 666, 956, 1333, 1355, 1408, 1424
SspDI GGCGCC 1 cut(s) 341
SspMI CTAG 4 cut(s) 1088, 1113, 1439, 1447
SstI GAGCTC 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 200, 540
StyI CCWWGG 1 cut(s) 756
TaaI ACNGT 3 cut(s) 608, 626, 846
TaiI ACGT 2 cut(s) 407, 681
TaqII GACCGA 1 cut(s) 1068
TasI AATT 7 cut(s) 30, 666, 956, 1333, 1355, 1408, 1424
TatI WGTACW 1 cut(s) 590
TauI GCSGC 8 cut(s) 126, 147, 217, 220, 223, 226, 302, 472
TfiI GAWTC 5 cut(s) 58, 256, 752, 978, 1265
Tru1I TTAA 3 cut(s) 351, 848, 1317
Tru9I TTAA 3 cut(s) 351, 848, 1317
TscAI CASTG 2 cut(s) 424, 471
TseI GCWGC 2 cut(s) 153, 442
TspDTI ATGAA 6 cut(s) 900, 949, 1166, 1367, 1377, 1437
TspGWI ACGGA 2 cut(s) 298, 397
TspRI CASTG 2 cut(s) 424, 471
VpaK11BI GGWCC 1 cut(s) 291
VspI ATTAAT 1 cut(s) 351
XapI RAATTY 3 cut(s) 30, 956, 1424
XhoI CTCGAG 1 cut(s) 176
XmnI GAANNNNTTC 3 cut(s) 460, 485, 1424
XspI CTAG 4 cut(s) 1088, 1113, 1439, 1447
ZraI GACGTC 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.