Prupe.5G089800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013961
Physical Location & Seq
Reverse (-)
10042928 .. 10046847
3920 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G089800.1

Sequence Viewer

Length: 1419 bp
ATGGGTTCCAGAAAATCCTTTACGACCCAGCAGAAGCCGGTGCTTCTGAAAGACTATCTAATGGACGATCTCAGCTCCTGCTCATCCAACGGATTCAAATCCTTCCCCCGCCGCCACTGCTGCACAACCAACGTCCGGTTCCTCCTCGACGTGGACCTCAAATCCTCATGTCAGCCGTCCATTCGCAAGATTAATCAACAAACTCCTAAACTCAACAGAAGCCGTTCCAGAGCCTCCGCAGCTTGCGACGCCGTCATTAAGGCCGTTAAAAGCCTGCCGTTTCATTCCGTCAAGCATCCTTCCCCGTCCTTGAGAAAAGGAGTGCTGCTTATCCCGCGAAGCCTCTCGCGGCGGCTGCGGAGAAAGAGCTTCTGGAGAAAACAGAGCAAGGAAGAAAAACAAGCAGAGAAGAAGGACAACGGACGGTTGAGATTGTTCCGTGAATTTCTCCAGGAAAAATCTGCACCTTCCGATCAAACCACAGCCACAACCGCGATCACAGGCTCTAGACTCTCTACCAGTACCAGAAGCAGTGAGAGTAAAACCGACAGCCACGGTAACAGTAACTGTAACAGTTGGGGTGAGAGTGAATTTACCTTAGGCTCCGAGAGTTCGAGCGGAAACGACGTAGTGCAGGGTGAAAGGACGAGTTCAGTTAAAAACAAAGTCAGCGAGAGAGTTGGCGAGGATTCTGTTTCCATCGAAAGACCAACCACCACCACCTGCTCACCTCAAAACGCAAAGGAGTGGCTAAATATTAAAGAGGAGAAGGAACAGTTTAGTCCAGTGTCCGTACTGGATTGTCCATTTGAAGACGAAGATGATCAGACTAGCTCACCATTCAGTTGTAGCCTTGCCCGCATGCAAGGTACCCAACAAAAACTTACGCAAAAGATCAGAAGGTTTGAAGGCTTAGCTCAATTGGAACCAGTGGACTTAGAGAAGCGAATGGATGAAATAATGTCAGACTCAGAGGTGGAAGACGAAGCACCCACATCACCCTTGGTGGGTGCAAACTATAACCACGGAGCCCAAATTGTTAACAGCACCCAAGAAAAAGCAGGAGAGCTGGTGCAGCTGATCAAAACAAGTAGTGCCCCATCAAACAAATTGGTGACTTTGAAGGTAGAGAAGTTGGTGCTGGATTTGTACAGAGATCGAATGGTCGAAAACAGCGACGAAAATGTGGTGATGAAAGAGGTGATGAAGGTGGCAGAGGATTGGATCAATGGGCAGTCACAGGAGTTGTTGTTGGGATGGGAGGTGGAAAATTGTAGGAAAGTTTACGTGAATGATATGGACAAGTACTGTGGGAATTGGAGGGAGTTGGAGGAAGAGAAACAAGAGGTGGGTTTGGAGTTGGAAGTTGAGGTTTGGAATTCTTTGATGAAAGAGTTGTTACTTGATATCTTAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

473

Amino Acids

53.38

Weight (kDa)

6.34

Isoelectric Point (pI)

54.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11780 AT4G23020 AT4G23020
fragaria_vesca FvH4_5g01430
malus_domestica MD04G1068300.v1.1
prunus_persica Prupe.5G089800_v2.0.a1
pyrus_communis pycom04g06170
rosa_chinensis RchiOBHm_Chr7g0199421
rosa_laevigata RLG00000003794
rosa_multiflora Rmu_sc0003890.1_g000015
rosa_roxburghii Rroxscaffold_3G00256740
rosa_rugosa Rorug07G0053800
rosa_samantha Rh7AG178900 Rh7BG182300 Rh7CG187500 Rh7DG181800
rosa_wichuraiana Rw7G015710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 731
Acc36I ACCTGC 1 cut(s) 731
Acc65I GGTACC 1 cut(s) 869
AccB1I GGYRCC 1 cut(s) 869
AccBSI CCGCTC 1 cut(s) 618
AccII CGCG 3 cut(s) 337, 349, 494
AclWI GGATC 1 cut(s) 1232
AcsI RAATTY 3 cut(s) 443, 590, 1378
AcyI GRCGYC 1 cut(s) 249
AfaI GTAC 5 cut(s) 523, 795, 871, 1151, 1307
AfiI CCNNNNNNNGG 3 cut(s) 135, 151, 1007
AgsI TTSAA 4 cut(s) 97, 812, 908, 1123
AjiI CACGTC 1 cut(s) 151
AjnI CCWGG 1 cut(s) 450
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 7 cut(s) 75, 242, 369, 834, 917, 1069, 1078
AluI AGCT 7 cut(s) 75, 242, 369, 834, 917, 1069, 1078
AlwI GGATC 1 cut(s) 1232
AlwNI CAGNNNCTG 2 cut(s) 78, 567
AoxI GGCC 1 cut(s) 261
ApeKI GCWGC 5 cut(s) 120, 239, 325, 355, 1075
ApoI RAATTY 3 cut(s) 443, 590, 1378
AseI ATTAAT 1 cut(s) 192
Asp700I GAANNNNTTC 1 cut(s) 223
Asp718I GGTACC 1 cut(s) 869
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 8 cut(s) 593, 650, 720, 828, 990, 1126, 1201, 1213
AvaII GGWCC 1 cut(s) 154
AxyI CCTNAGG 1 cut(s) 598
BaeGI GKGCMC 1 cut(s) 1099
BanI GGYRCC 1 cut(s) 869
BanII GRGCYC 1 cut(s) 1033
BbsI GAAGAC 2 cut(s) 819, 987
BbvI GCAGC 5 cut(s) 107, 251, 312, 342, 1087
BccI CCATC 3 cut(s) 707, 1108, 1251
BceAI ACGGC 5 cut(s) 160, 207, 236, 248, 262
BciT130I CCWGG 1 cut(s) 452
BclI TGATCA 2 cut(s) 823, 1080
BfaI CTAG 3 cut(s) 507, 831, 1417
BfuAI ACCTGC 1 cut(s) 731
BisI GCNGC 8 cut(s) 112, 121, 240, 326, 350, 353, 356, 1076
BlpI GCTNAGC 1 cut(s) 913
BlsI GCNGC 8 cut(s) 113, 122, 241, 327, 351, 354, 357, 1077
BmcAI AGTACT 1 cut(s) 1307
Bme1390I CCNGG 1 cut(s) 452
Bme18I GGWCC 1 cut(s) 154
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 6 cut(s) 7, 140, 604, 871, 927, 1030
BmrFI CCNGG 1 cut(s) 452
BmsI GCATC 1 cut(s) 304
BpiI GAAGAC 2 cut(s) 819, 987
BpmI CTGGAG 2 cut(s) 394, 434
Bpu1102I GCTNAGC 1 cut(s) 913
BpuEI CTTGAG 1 cut(s) 331
BsaAI YACGTR 1 cut(s) 1288
BsaBI GATNNNNATC 1 cut(s) 97
BsaHI GRCGYC 1 cut(s) 249
BsaJI CCNNGG 3 cut(s) 553, 1002, 1024
BsaWI WCCGGW 1 cut(s) 135
BsaXI ACNNNNNCTCC 4 cut(s) 1056, 1086, 1235, 1265
Bsc4I CCNNNNNNNGG 3 cut(s) 135, 151, 1007
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 4 cut(s) 519, 785, 801, 929
Bse21I CCTNAGG 1 cut(s) 598
Bse8I GATNNNNATC 1 cut(s) 97
BseBI CCWGG 1 cut(s) 452
BseDI CCNNGG 3 cut(s) 553, 1002, 1024
BseGI GGATG 4 cut(s) 83, 295, 958, 1262
BseJI GATNNNNATC 1 cut(s) 97
BseLI CCNNNNNNNGG 3 cut(s) 135, 151, 1007
BseMII CTCAG 2 cut(s) 85, 984
BseNI ACTGG 4 cut(s) 519, 785, 801, 929
BseRI GAGGAG 2 cut(s) 134, 779
BseSI GKGCMC 1 cut(s) 1099
BseXI GCAGC 5 cut(s) 107, 251, 312, 342, 1087
BseYI CCCAGC 1 cut(s) 27
BsgI GTGCAG 4 cut(s) 106, 447, 653, 1094
Bsh1236I CGCG 3 cut(s) 337, 349, 494
BshFI GGCC 1 cut(s) 263
BshNI GGYRCC 1 cut(s) 869
BsiSI CCGG 2 cut(s) 38, 136
BslI CCNNNNNNNGG 3 cut(s) 135, 151, 1007
BsnI GGCC 1 cut(s) 263
Bsp1286I GDGCHC 2 cut(s) 1033, 1099
Bsp1407I TGTACA 1 cut(s) 1149
Bsp143I GATC 8 cut(s) 67, 472, 495, 823, 894, 1080, 1156, 1224
Bsp1720I GCTNAGC 1 cut(s) 913
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 2 cut(s) 84, 983
BspFNI CGCG 3 cut(s) 337, 349, 494
BspLI GGNNCC 6 cut(s) 7, 140, 604, 871, 927, 1030
BspMI ACCTGC 1 cut(s) 731
BspPI GGATC 1 cut(s) 1232
BspT107I GGYRCC 1 cut(s) 869
BsrBI CCGCTC 1 cut(s) 618
BsrFI RCCGGY 1 cut(s) 37
BsrGI TGTACA 1 cut(s) 1149
BsrI ACTGG 4 cut(s) 519, 785, 801, 929
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 3 cut(s) 553, 1002, 1024
BssMI GATC 8 cut(s) 67, 472, 495, 823, 894, 1080, 1156, 1224
BssNI GRCGYC 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 1002
Bst2UI CCWGG 1 cut(s) 452
Bst4CI ACNGT 7 cut(s) 426, 557, 563, 569, 575, 777, 1310
Bst6I CTCTTC 1 cut(s) 1329
BstACI GRCGYC 1 cut(s) 249
BstAUI TGTACA 1 cut(s) 1149
BstBAI YACGTR 1 cut(s) 1288
BstC8I GCNNGC 4 cut(s) 244, 275, 859, 863
BstDEI CTNAG 5 cut(s) 71, 598, 913, 937, 970
BstDSI CCRYGG 2 cut(s) 553, 1024
BstF5I GGATG 4 cut(s) 83, 295, 958, 1262
BstFNI CGCG 3 cut(s) 337, 349, 494
BstKTI GATC 8 cut(s) 70, 475, 498, 826, 897, 1083, 1159, 1227
BstMBI GATC 8 cut(s) 67, 472, 495, 823, 894, 1080, 1156, 1224
BstMWI GCNNNNNNNGC 9 cut(s) 117, 120, 239, 248, 334, 355, 491, 858, 1075
BstNI CCWGG 1 cut(s) 452
BstNSI RCATGY 1 cut(s) 865
BstSCI CCNGG 1 cut(s) 450
BstSLI GKGCMC 1 cut(s) 1099
BstUI CGCG 3 cut(s) 337, 349, 494
BstV1I GCAGC 5 cut(s) 107, 251, 312, 342, 1087
BstV2I GAAGAC 2 cut(s) 819, 987
Bsu36I CCTNAGG 1 cut(s) 598
BsuRI GGCC 1 cut(s) 263
BtgI CCRYGG 2 cut(s) 553, 1024
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 4 cut(s) 83, 295, 958, 1262
BtsI GCAGTG 2 cut(s) 115, 538
BtsIMutI CAGTG 4 cut(s) 115, 538, 792, 936
BveI ACCTGC 1 cut(s) 731
Cac8I GCNNGC 4 cut(s) 244, 275, 859, 863
CaiI CAGNNNCTG 2 cut(s) 78, 567
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 154
CseI GACGC 1 cut(s) 257
Csp6I GTAC 5 cut(s) 522, 794, 870, 1150, 1306
CspCI CAANNNNNGTGG 2 cut(s) 1291, 1326
CviAII CATG 2 cut(s) 168, 862
CviQI GTAC 5 cut(s) 522, 794, 870, 1150, 1306
DdeI CTNAG 5 cut(s) 71, 598, 913, 937, 970
DpnI GATC 8 cut(s) 69, 474, 497, 825, 896, 1082, 1158, 1226
DpnII GATC 8 cut(s) 67, 472, 495, 823, 894, 1080, 1156, 1224
Eam1104I CTCTTC 1 cut(s) 1329
EarI CTCTTC 1 cut(s) 1329
Eco130I CCWWGG 1 cut(s) 1002
Eco24I GRGCYC 1 cut(s) 1033
Eco32I GATATC 1 cut(s) 1408
Eco47I GGWCC 1 cut(s) 154
Eco81I CCTNAGG 1 cut(s) 598
EcoRI GAATTC 1 cut(s) 1378
EcoRII CCWGG 1 cut(s) 450
EcoRV GATATC 1 cut(s) 1408
EcoT14I CCWWGG 1 cut(s) 1002
EcoT38I GRGCYC 1 cut(s) 1033
ErhI CCWWGG 1 cut(s) 1002
FaeI CATG 2 cut(s) 171, 865
FaiI YATR 4 cut(s) 169, 863, 1020, 1298
FatI CATG 2 cut(s) 167, 861
FauI CCCGC 3 cut(s) 116, 342, 866
FbaI TGATCA 2 cut(s) 823, 1080
Fnu4HI GCNGC 8 cut(s) 112, 121, 240, 326, 350, 353, 356, 1076
FokI GGATG 4 cut(s) 70, 282, 965, 1269
FriOI GRGCYC 1 cut(s) 1033
Fsp4HI GCNGC 8 cut(s) 112, 121, 240, 326, 350, 353, 356, 1076
FspBI CTAG 3 cut(s) 507, 831, 1417
GluI GCNGC 8 cut(s) 112, 121, 240, 326, 350, 353, 356, 1076
GsaI CCCAGC 1 cut(s) 31
GsuI CTGGAG 2 cut(s) 394, 434
HaeIII GGCC 1 cut(s) 263
HapII CCGG 2 cut(s) 38, 136
HgaI GACGC 1 cut(s) 257
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 2 cut(s) 171, 865
HincII GTYRAC 1 cut(s) 1042
HindII GTYRAC 1 cut(s) 1042
HinfI GANTC 4 cut(s) 93, 510, 689, 968
HpaI GTTAAC 1 cut(s) 1042
HpaII CCGG 2 cut(s) 38, 136
HphI GGTGA 8 cut(s) 593, 650, 720, 828, 990, 1126, 1201, 1213
Hpy166II GTNNAC 4 cut(s) 154, 934, 1042, 1285
Hpy188I TCNGA 7 cut(s) 48, 472, 607, 828, 899, 967, 973
Hpy188III TCNNGA 4 cut(s) 9, 228, 373, 507
Hpy8I GTNNAC 4 cut(s) 154, 934, 1042, 1285
Hpy99I CGWCG 4 cut(s) 152, 251, 629, 1181
HpyAV CCTTC 9 cut(s) 112, 309, 406, 477, 763, 894, 902, 1117, 1201
HpyCH4III ACNGT 7 cut(s) 426, 557, 563, 569, 575, 777, 1310
HpyCH4IV ACGT 4 cut(s) 132, 150, 627, 1287
HpyCH4V TGCA 6 cut(s) 123, 464, 634, 865, 1013, 1075
HpyF10VI GCNNNNNNNGC 9 cut(s) 117, 120, 239, 248, 334, 355, 491, 858, 1075
HpyF3I CTNAG 5 cut(s) 71, 598, 913, 937, 970
HpySE526I ACGT 4 cut(s) 132, 150, 627, 1287
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 2 cut(s) 171, 865
KpnI GGTACC 1 cut(s) 873
Ksp22I TGATCA 2 cut(s) 823, 1080
KspAI GTTAAC 1 cut(s) 1042
Kzo9I GATC 8 cut(s) 67, 472, 495, 823, 894, 1080, 1156, 1224
LmnI GCTCC 3 cut(s) 80, 608, 1028
Lsp1109I GCAGC 5 cut(s) 107, 251, 312, 342, 1087
LweI GCATC 1 cut(s) 304
MaeI CTAG 3 cut(s) 507, 831, 1417
MaeII ACGT 4 cut(s) 132, 150, 627, 1287
MaeIII GTNAC 6 cut(s) 557, 563, 569, 1114, 1236, 1398
MalI GATC 8 cut(s) 69, 474, 497, 825, 896, 1082, 1158, 1226
MbiI CCGCTC 1 cut(s) 618
MboI GATC 8 cut(s) 67, 472, 495, 823, 894, 1080, 1156, 1224
MboII GAAGA 6 cut(s) 404, 421, 824, 830, 992, 1346
MfeI CAATTG 1 cut(s) 920
MhlI GDGCHC 2 cut(s) 1033, 1099
MluCI AATT 8 cut(s) 443, 590, 920, 1035, 1109, 1270, 1315, 1378
MlyI GAGTC 2 cut(s) 504, 962
MmeI TCCRAC 3 cut(s) 111, 1308, 1341
MroXI GAANNNNTTC 1 cut(s) 223
MseI TTAA 7 cut(s) 192, 258, 267, 657, 759, 1041, 1412
MspA1I CMGCKG 1 cut(s) 1078
MspI CCGG 2 cut(s) 38, 136
MspR9I CCNGG 1 cut(s) 452
MunI CAATTG 1 cut(s) 920
MvaI CCWGG 1 cut(s) 452
MvnI CGCG 3 cut(s) 337, 349, 494
MwoI GCNNNNNNNGC 9 cut(s) 117, 120, 239, 248, 334, 355, 491, 858, 1075
NdeII GATC 8 cut(s) 67, 472, 495, 823, 894, 1080, 1156, 1224
NlaIII CATG 2 cut(s) 171, 865
NlaIV GGNNCC 6 cut(s) 7, 140, 604, 871, 927, 1030
NmuCI GTSAC 2 cut(s) 1114, 1236
NspI RCATGY 1 cut(s) 865
PaeI GCATGC 1 cut(s) 865
PaqCI CACCTGC 1 cut(s) 731
PcsI WCGNNNNNNNCGW 1 cut(s) 1173
PdmI GAANNNNTTC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 93, 689
PflFI GACNNNGTC 1 cut(s) 251
PfoI TCCNGGA 1 cut(s) 450
PkrI GCNGC 8 cut(s) 113, 122, 241, 327, 351, 354, 357, 1077
PleI GAGTC 2 cut(s) 504, 962
PpsI GAGTC 2 cut(s) 504, 962
Ppu21I YACGTR 1 cut(s) 1288
PshBI ATTAAT 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 450
PspFI CCCAGC 1 cut(s) 27
PspGI CCWGG 1 cut(s) 450
PspN4I GGNNCC 6 cut(s) 7, 140, 604, 871, 927, 1030
PspPI GGNCC 1 cut(s) 154
PstNI CAGNNNCTG 2 cut(s) 78, 567
PsyI GACNNNGTC 1 cut(s) 251
PvuII CAGCTG 1 cut(s) 1078
RsaI GTAC 5 cut(s) 523, 795, 871, 1151, 1307
RsaNI GTAC 5 cut(s) 522, 794, 870, 1150, 1306
SaqAI TTAA 7 cut(s) 192, 258, 267, 657, 759, 1041, 1412
SatI GCNGC 8 cut(s) 112, 121, 240, 326, 350, 353, 356, 1076
Sau3AI GATC 8 cut(s) 67, 472, 495, 823, 894, 1080, 1156, 1224
Sau96I GGNCC 1 cut(s) 154
ScaI AGTACT 1 cut(s) 1307
SchI GAGTC 2 cut(s) 504, 962
ScrFI CCNGG 1 cut(s) 452
SduI GDGCHC 2 cut(s) 1033, 1099
SfaNI GCATC 1 cut(s) 304
SinI GGWCC 1 cut(s) 154
SmlI CTYRAG 1 cut(s) 310
SmoI CTYRAG 1 cut(s) 310
SphI GCATGC 1 cut(s) 865
Sse9I AATT 8 cut(s) 443, 590, 920, 1035, 1109, 1270, 1315, 1378
SspI AATATT 1 cut(s) 757
SspMI CTAG 3 cut(s) 507, 831, 1417
StyD4I CCNGG 1 cut(s) 450
StyI CCWWGG 1 cut(s) 1002
TaaI ACNGT 7 cut(s) 426, 557, 563, 569, 575, 777, 1310
TaiI ACGT 4 cut(s) 135, 153, 630, 1290
TaqI TCGA 5 cut(s) 147, 614, 702, 1159, 1167
TasI AATT 8 cut(s) 443, 590, 920, 1035, 1109, 1270, 1315, 1378
TatI WGTACW 2 cut(s) 1149, 1305
TauI GCSGC 3 cut(s) 114, 352, 355
TfiI GAWTC 2 cut(s) 93, 689
Tru1I TTAA 7 cut(s) 192, 258, 267, 657, 759, 1041, 1412
Tru9I TTAA 7 cut(s) 192, 258, 267, 657, 759, 1041, 1412
TscAI CASTG 4 cut(s) 122, 538, 792, 936
TseFI GTSAC 2 cut(s) 1114, 1236
TseI GCWGC 5 cut(s) 120, 239, 325, 355, 1075
Tsp45I GTSAC 2 cut(s) 1114, 1236
TspDTI ATGAA 5 cut(s) 272, 969, 1208, 1220, 1403
TspGWI ACGGA 6 cut(s) 105, 277, 428, 435, 781, 1041
TspRI CASTG 4 cut(s) 122, 538, 792, 936
Tth111I GACNNNGTC 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 154
VspI ATTAAT 1 cut(s) 192
XapI RAATTY 3 cut(s) 443, 590, 1378
XbaI TCTAGA 1 cut(s) 506
XceI RCATGY 1 cut(s) 865
XcmI CCANNNNNNNNNTGG 1 cut(s) 1000
XmnI GAANNNNTTC 1 cut(s) 223
XspI CTAG 3 cut(s) 507, 831, 1417
ZrmI AGTACT 1 cut(s) 1307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.