FvH4_5g02510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0006371
Physical Location & Seq
Forward (+)
1516306 .. 1518838
2533 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02510.t1

Sequence Viewer

Length: 615 bp
ATGGAGGAAGACGGAGGAGAACAAACTCAGCCGCCGCATCCGGTGACCTCCGAAACCTCAATCTCCGACCCGAACCTAAATCCACCGTCCACGTGTCCCGATACCTCACTCGATCCTACGCACTCCGACGGCTCCGACTCAGACCCGCCGTCCACGTGTCCCGATACCGCACTCGATCCTACGCACTCCAACGGCTCCGACTCAAACCCACCGTCCACGTGTCCCGATACCGCACTCGATCGTACACACTCCGACGGCTCCGACTCAAACCCGCCGCTGAACCAGACCGAGCTGTTCCGAGCTCTCGAAGTCGTCGAGAGAGACTCCGTCGCCATCGCCGGAAGCTTCACCTCCCTGTTCTCCTCCCTCCGCCTCGCTCTCTCCGAGGTTACTAGCAACTCGGTCGATCACATGAGTTGCTTTAGCGACGCCGCCGGCCGGCTTCAAGAATCCGTGCTTGATGCCGCCACGAAGGGGAATCGGTACATAAATTCATGTCTCAGATTGAATGAAGAAATGAAGGGCGTTGAGAATCTAGCTTTACAGCTAAAAATCTTGAGAAGAAATGTTGATGCTCTAGACTCCGGAGTTAACAAGCTCCTCCGCCTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BORCS6

Protein Analysis

205

Amino Acids

21.78

Weight (kDa)

4.37

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BORCS6 PF10157 100 - 194 2.1e-20 BLOC-1-related complex sub-unit 6 C-terminal helix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 584
AclWI GGATC 2 cut(s) 107, 170
AcoI YGGCCR 1 cut(s) 436
AcsI RAATTY 1 cut(s) 490
AcvI CACGTG 3 cut(s) 93, 156, 219
AcyI GRCGYC 1 cut(s) 429
AfaI GTAC 2 cut(s) 244, 485
AfiI CCNNNNNNNGG 2 cut(s) 438, 474
AflIII ACRYGT 3 cut(s) 92, 155, 218
AgsI TTSAA 2 cut(s) 446, 508
AhdI GACNNNNNGTC 1 cut(s) 148
AluBI AGCT 6 cut(s) 292, 302, 345, 539, 547, 598
AluI AGCT 6 cut(s) 292, 302, 345, 539, 547, 598
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 2 cut(s) 315, 503
AlwI GGATC 2 cut(s) 107, 170
Aor13HI TCCGGA 1 cut(s) 584
AoxI GGCC 1 cut(s) 436
ApoI RAATTY 1 cut(s) 490
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
AsuHPI GGTGA 2 cut(s) 55, 340
BanII GRGCYC 1 cut(s) 304
BbrPI CACGTG 3 cut(s) 93, 156, 219
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 304
BccI CCATC 1 cut(s) 341
BceAI ACGGC 4 cut(s) 133, 145, 208, 271
BcgI CGANNNNNNTGC 2 cut(s) 385, 419
BcoDI GTCTC 2 cut(s) 315, 503
BfaI CTAG 3 cut(s) 393, 536, 578
BisI GCNGC 5 cut(s) 32, 35, 275, 432, 465
BlsI GCNGC 5 cut(s) 33, 36, 276, 433, 466
BmeRI GACNNNNNGTC 1 cut(s) 148
BmiI GGNNCC 3 cut(s) 133, 196, 259
BmsI GCATC 3 cut(s) 46, 451, 562
BpiI GAAGAC 1 cut(s) 15
BplI GAGNNNNNCTC 2 cut(s) 308, 340
BpuEI CTTGAG 1 cut(s) 577
BsaAI YACGTR 3 cut(s) 93, 156, 219
BsaHI GRCGYC 1 cut(s) 429
BsaJI CCNNGG 1 cut(s) 384
BsaWI WCCGGW 2 cut(s) 40, 584
Bsc4I CCNNNNNNNGG 2 cut(s) 438, 474
Bse118I RCCGGY 2 cut(s) 434, 438
BseAI TCCGGA 1 cut(s) 584
BseDI CCNNGG 1 cut(s) 384
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 2 cut(s) 438, 474
BseMII CTCAG 3 cut(s) 41, 153, 514
BseRI GAGGAG 3 cut(s) 30, 352, 590
BseX3I CGGCCG 1 cut(s) 436
Bsh1285I CGRYCG 3 cut(s) 241, 405, 439
BshFI GGCC 1 cut(s) 438
BsiEI CGRYCG 3 cut(s) 241, 405, 439
BsiHKAI GWGCWC 1 cut(s) 304
BsiSI CCGG 5 cut(s) 41, 339, 435, 439, 585
BslFI GGGAC 3 cut(s) 81, 144, 207
BslI CCNNNNNNNGG 2 cut(s) 438, 474
BsmAI GTCTC 2 cut(s) 315, 503
BsmFI GGGAC 3 cut(s) 81, 144, 207
BsnI GGCC 1 cut(s) 438
Bsp1286I GDGCHC 1 cut(s) 304
Bsp13I TCCGGA 1 cut(s) 584
Bsp143I GATC 4 cut(s) 112, 175, 238, 406
BspANI GGCC 1 cut(s) 438
BspCNI CTCAG 3 cut(s) 40, 152, 513
BspEI TCCGGA 1 cut(s) 584
BspLI GGNNCC 3 cut(s) 133, 196, 259
BspPI GGATC 2 cut(s) 107, 170
BsrFI RCCGGY 2 cut(s) 434, 438
BssAI RCCGGY 2 cut(s) 434, 438
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 4 cut(s) 112, 175, 238, 406
BssNI GRCGYC 1 cut(s) 429
Bst4CI ACNGT 2 cut(s) 87, 213
BstACI GRCGYC 1 cut(s) 429
BstBAI YACGTR 3 cut(s) 93, 156, 219
BstC8I GCNNGC 2 cut(s) 436, 440
BstDEI CTNAG 3 cut(s) 27, 139, 500
BstEII GGTNACC 1 cut(s) 43
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 4 cut(s) 115, 178, 241, 409
BstMAI GTCTC 2 cut(s) 315, 503
BstMBI GATC 4 cut(s) 112, 175, 238, 406
BstMCI CGRYCG 3 cut(s) 241, 405, 439
BstPI GGTNACC 1 cut(s) 43
BstV2I GAAGAC 1 cut(s) 15
BstZI CGGCCG 1 cut(s) 436
BsuRI GGCC 1 cut(s) 438
BtgZI GCGATG 1 cut(s) 319
BtsCI GGATG 1 cut(s) 37
Cac8I GCNNGC 2 cut(s) 436, 440
Cfr10I RCCGGY 2 cut(s) 434, 438
CseI GACGC 1 cut(s) 437
Csp6I GTAC 2 cut(s) 243, 484
CviAII CATG 3 cut(s) 412, 495, 612
CviQI GTAC 2 cut(s) 243, 484
DdeI CTNAG 3 cut(s) 27, 139, 500
DpnI GATC 4 cut(s) 114, 177, 240, 408
DpnII GATC 4 cut(s) 112, 175, 238, 406
DriI GACNNNNNGTC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 436
EagI CGGCCG 1 cut(s) 436
Eam1105I GACNNNNNGTC 1 cut(s) 148
EciI GGCGGA 2 cut(s) 359, 593
Ecl136II GAGCTC 1 cut(s) 302
EclXI CGGCCG 1 cut(s) 436
Eco24I GRGCYC 1 cut(s) 304
Eco52I CGGCCG 1 cut(s) 436
Eco53kI GAGCTC 1 cut(s) 302
Eco72I CACGTG 3 cut(s) 93, 156, 219
Eco91I GGTNACC 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 302
EcoO65I GGTNACC 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 304
FaeI CATG 3 cut(s) 415, 498, 615
FaiI YATR 4 cut(s) 413, 488, 496, 613
FaqI GGGAC 3 cut(s) 81, 144, 207
FatI CATG 3 cut(s) 411, 494, 611
FauI CCCGC 2 cut(s) 153, 279
Fnu4HI GCNGC 5 cut(s) 32, 35, 275, 432, 465
FokI GGATG 1 cut(s) 24
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 5 cut(s) 32, 35, 275, 432, 465
FspBI CTAG 3 cut(s) 393, 536, 578
GluI GCNGC 5 cut(s) 32, 35, 275, 432, 465
HaeIII GGCC 1 cut(s) 438
HapII CCGG 5 cut(s) 41, 339, 435, 439, 585
HgaI GACGC 1 cut(s) 437
Hin1I GRCGYC 1 cut(s) 429
Hin1II CATG 3 cut(s) 415, 498, 615
HincII GTYRAC 1 cut(s) 592
HindII GTYRAC 1 cut(s) 592
HindIII AAGCTT 1 cut(s) 343
HinfI GANTC 8 cut(s) 137, 200, 263, 323, 449, 478, 532, 581
HpaI GTTAAC 1 cut(s) 592
HpaII CCGG 5 cut(s) 41, 339, 435, 439, 585
HphI GGTGA 2 cut(s) 55, 340
Hpy166II GTNNAC 5 cut(s) 90, 153, 216, 245, 592
Hpy188III TCNNGA 9 cut(s) 98, 161, 224, 305, 316, 446, 556, 578, 585
Hpy8I GTNNAC 5 cut(s) 90, 153, 216, 245, 592
Hpy99I CGWCG 5 cut(s) 131, 257, 317, 332, 431
HpyAV CCTTC 2 cut(s) 466, 514
HpyCH4III ACNGT 2 cut(s) 87, 213
HpyCH4IV ACGT 3 cut(s) 92, 155, 218
HpyF3I CTNAG 3 cut(s) 27, 139, 500
HpySE526I ACGT 3 cut(s) 92, 155, 218
Hsp92I GRCGYC 1 cut(s) 429
Hsp92II CATG 3 cut(s) 415, 498, 615
Kpn2I TCCGGA 1 cut(s) 584
KroI GCCGGC 2 cut(s) 434, 438
KroNI GCCGGC 2 cut(s) 436, 440
KspAI GTTAAC 1 cut(s) 592
Kzo9I GATC 4 cut(s) 112, 175, 238, 406
LmnI GCTCC 4 cut(s) 137, 200, 263, 603
LpnPI CCDG 7 cut(s) 54, 296, 352, 368, 448, 452, 598
LweI GCATC 3 cut(s) 46, 451, 562
MaeI CTAG 3 cut(s) 393, 536, 578
MaeII ACGT 3 cut(s) 92, 155, 218
MaeIII GTNAC 2 cut(s) 43, 388
MalI GATC 4 cut(s) 114, 177, 240, 408
MboI GATC 4 cut(s) 112, 175, 238, 406
MboII GAAGA 3 cut(s) 20, 524, 573
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 1 cut(s) 490
MlyI GAGTC 5 cut(s) 131, 194, 257, 317, 575
MmeI TCCRAC 7 cut(s) 90, 150, 159, 213, 222, 276, 285
MroI TCCGGA 1 cut(s) 584
MroNI GCCGGC 2 cut(s) 434, 438
MseI TTAA 1 cut(s) 591
MspA1I CMGCKG 1 cut(s) 277
MspI CCGG 5 cut(s) 41, 339, 435, 439, 585
NaeI GCCGGC 2 cut(s) 436, 440
NdeII GATC 4 cut(s) 112, 175, 238, 406
NgoMIV GCCGGC 2 cut(s) 434, 438
NlaIII CATG 3 cut(s) 415, 498, 615
NlaIV GGNNCC 3 cut(s) 133, 196, 259
NmuCI GTSAC 1 cut(s) 43
PcsI WCGNNNNNNNCGW 2 cut(s) 312, 381
PdiI GCCGGC 2 cut(s) 436, 440
PfeI GAWTC 3 cut(s) 449, 478, 532
PflFI GACNNNGTC 1 cut(s) 326
PkrI GCNGC 5 cut(s) 33, 36, 276, 433, 466
Ple19I CGATCG 1 cut(s) 241
PleI GAGTC 5 cut(s) 131, 194, 257, 317, 575
PmaCI CACGTG 3 cut(s) 93, 156, 219
PmlI CACGTG 3 cut(s) 93, 156, 219
PpsI GAGTC 5 cut(s) 131, 194, 257, 317, 575
Ppu21I YACGTR 3 cut(s) 93, 156, 219
Psp124BI GAGCTC 1 cut(s) 304
PspCI CACGTG 3 cut(s) 93, 156, 219
PspEI GGTNACC 1 cut(s) 43
PspN4I GGNNCC 3 cut(s) 133, 196, 259
PsyI GACNNNGTC 1 cut(s) 326
PvuI CGATCG 1 cut(s) 241
RsaI GTAC 2 cut(s) 244, 485
RsaNI GTAC 2 cut(s) 243, 484
SacI GAGCTC 1 cut(s) 304
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 5 cut(s) 32, 35, 275, 432, 465
Sau3AI GATC 4 cut(s) 112, 175, 238, 406
SchI GAGTC 5 cut(s) 131, 194, 257, 317, 575
SduI GDGCHC 1 cut(s) 304
SfaNI GCATC 3 cut(s) 46, 451, 562
SmlI CTYRAG 1 cut(s) 556
SmoI CTYRAG 1 cut(s) 556
Sse9I AATT 1 cut(s) 490
SspMI CTAG 3 cut(s) 393, 536, 578
SstI GAGCTC 1 cut(s) 304
TaaI ACNGT 2 cut(s) 87, 213
TaiI ACGT 3 cut(s) 95, 158, 221
TaqI TCGA 6 cut(s) 111, 174, 237, 306, 315, 405
TaqII GACCGA 2 cut(s) 302, 391
TasI AATT 1 cut(s) 490
TauI GCSGC 5 cut(s) 34, 37, 277, 434, 467
TfiI GAWTC 3 cut(s) 449, 478, 532
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TseFI GTSAC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 3 cut(s) 483, 525, 533
TspGWI ACGGA 3 cut(s) 27, 316, 442
Tth111I GACNNNGTC 1 cut(s) 326
XapI RAATTY 1 cut(s) 490
XbaI TCTAGA 1 cut(s) 577
XspI CTAG 3 cut(s) 393, 536, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.