Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006371

Physical Location & Seq

Genomic Coordinates Forward (+)

13099243 .. 13101182

Gene Structure 1940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g08050.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGTGAATAAATTATCCGACTGGTTGGAGAAGCTCATGCCTTTGTATATTATTTGGAATGCTTTTATCTGGGAAATAATTTGTTTCCTAAATTGCCCTTACAGTCAGTTTAAGGACTATTGCCTCAATTCATTTTATTATTTTTATTCTATCATGCTATTGATCAACAGTTCCAGTCTTCAAGACAAAACCCGGAACATAGCCCGCGGGAAAATGGAGGAAGACGGAGGAGAACCACCTCGACCGCCCCATCCGACGAGCTCCGAAGCCCTAACGTCAGACCCGCGCCTCGATCCACAGTCCACGTGTCCTGATTCCACACTCGATCCCAGTGAGGACAACCGCACCGATTCGAAACCCCCTCCGATGAACCAGACCGAGATTTTCCGCGCTCTCGAAGTGGTCGAGAGAGACTCCCTGGCCATAGCCGACAGCTTCACCTCCCTCTTCGACTCCCTCCGCCTGGCCCTCTCCGAGGTTACTAGCAACTCAGTTGATCACATGCATTGCTTTGGTGACGCTGCTGGCCGCCTTCAAGAATCTGTGCTTGATGCTGCTACCAAGGGAAATCGGTATATAAATTCATGTCTCAGATTAAATGAAGAAATGAAGGGCATTGACAGTCTAGCCTTGCAGCTAAAAATCTTGAGGAGAAATGTTGATGCTCTCGACTCAGGTGTGAACAAGCTCCTTCGTCTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BORCS6

Protein Analysis

235

Amino Acids

26.5

Weight (kDa)

4.88

Isoelectric Point (pI)

61.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23330 AT4G23330 AT4G23330 AT4G23330
fragaria_vesca	FvH4_5g02510 FvH4_5g02510
malus_domestica	MD06G1084200.v1.1 MD14G1105400.v1.1
prunus_persica	Prupe.5G100600_v2.0.a1 Prupe.5G100600_v2.0.a1 Prupe.5G100600_v2.0.a1 Prupe.5G100600_v2.0.a1
pyrus_communis	pycom06g08050 pycom14g10080
rosa_chinensis	RchiOBHm_Chr7g0197541
rosa_laevigata	RLG00000003926
rosa_multiflora	Rmu_sc0001164.1_g000003 Rmu_sc0007007.1_g000002 Rmu_sc0024523.1_g000002
rosa_roxburghii	Rroxscaffold_3G00258360
rosa_rugosa	Rorug07G0041000 Rorug07G0041100 Rorug07G0041100
rosa_samantha	Rh7AG165800 Rh7CG174200 Rh7DG167200
rosa_wichuraiana	Rw7G014430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	207, 286, 390
AciI	CCGC	8 cut(s)	205, 207, 245, 284, 343, 388, 460, 529
AclWI	GGATC	2 cut(s)	287, 320
AcoI	YGGCCR	2 cut(s)	420, 526
AcsI	RAATTY	1 cut(s)	580
AcvI	CACGTG	1 cut(s)	306
AfiI	CCNNNNNNNGG	2 cut(s)	463, 475
AflIII	ACRYGT	1 cut(s)	305
AgsI	TTSAA	2 cut(s)	182, 536
AjnI	CCWGG	2 cut(s)	417, 462
AluBI	AGCT	5 cut(s)	34, 261, 435, 637, 688
AluI	AGCT	5 cut(s)	34, 261, 435, 637, 688
Alw21I	GWGCWC	1 cut(s)	263
Alw26I	GTCTC	2 cut(s)	405, 593
AlwI	GGATC	2 cut(s)	287, 320
AoxI	GGCC	3 cut(s)	420, 465, 526
ApeKI	GCWGC	3 cut(s)	521, 554, 634
ApoI	RAATTY	1 cut(s)	580
AspLEI	GCGC	2 cut(s)	288, 392
AspS9I	GGNCC	1 cut(s)	466
AsuC2I	CCSGG	1 cut(s)	193
AsuHPI	GGTGA	3 cut(s)	16, 430, 527
AsuII	TTCGAA	1 cut(s)	353
BalI	TGGCCA	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	263
BbrPI	CACGTG	1 cut(s)	306
BbsI	GAAGAC	3 cut(s)	170, 228, 689
Bbv12I	GWGCWC	1 cut(s)	263
BbvI	GCAGC	3 cut(s)	508, 541, 646
BccI	CCATC	1 cut(s)	258
BciT130I	CCWGG	2 cut(s)	419, 464
BclI	TGATCA	2 cut(s)	162, 496
BcnI	CCSGG	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	405, 593
BfaI	CTAG	2 cut(s)	483, 626
BisI	GCNGC	4 cut(s)	522, 529, 555, 635
BlsI	GCNGC	4 cut(s)	523, 530, 556, 636
Bme1390I	CCNGG	3 cut(s)	193, 419, 464
BmgT120I	GGNCC	1 cut(s)	466
BmrFI	CCNGG	3 cut(s)	193, 419, 464
BmrI	ACTGGG	1 cut(s)	324
BmsI	GCATC	2 cut(s)	541, 652
BmuI	ACTGGG	1 cut(s)	324
BpiI	GAAGAC	3 cut(s)	170, 228, 689
BplI	GAGNNNNNCTC	2 cut(s)	398, 430
Bpu14I	TTCGAA	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	667
BpuMI	CCSGG	1 cut(s)	193
BsaAI	YACGTR	1 cut(s)	306
BsaJI	CCNNGG	4 cut(s)	205, 417, 474, 561
Bsc4I	CCNNNNNNNGG	2 cut(s)	463, 475
Bse1I	ACTGG	3 cut(s)	26, 174, 330
Bse3DI	GCAATG	1 cut(s)	505
BseBI	CCWGG	2 cut(s)	419, 464
BseDI	CCNNGG	4 cut(s)	205, 417, 474, 561
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	2 cut(s)	463, 475
BseMI	GCAATG	1 cut(s)	505
BseMII	CTCAG	3 cut(s)	504, 604, 687
BseNI	ACTGG	3 cut(s)	26, 174, 330
BseRI	GAGGAG	2 cut(s)	243, 664
BseXI	GCAGC	3 cut(s)	508, 541, 646
Bsh1236I	CGCG	3 cut(s)	207, 286, 390
Bsh1285I	CGRYCG	1 cut(s)	245
BshFI	GGCC	3 cut(s)	422, 467, 528
BsiEI	CGRYCG	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	193
BslI	CCNNNNNNNGG	2 cut(s)	463, 475
BsmAI	GTCTC	2 cut(s)	405, 593
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	3 cut(s)	422, 467, 528
Bsp119I	TTCGAA	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp143I	GATC	4 cut(s)	162, 292, 325, 496
BspACI	CCGC	8 cut(s)	205, 207, 245, 284, 343, 388, 460, 529
BspANI	GGCC	3 cut(s)	422, 467, 528
BspCNI	CTCAG	3 cut(s)	503, 603, 686
BspFNI	CGCG	3 cut(s)	207, 286, 390
BspPI	GGATC	2 cut(s)	287, 320
BspT104I	TTCGAA	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	505
BsrI	ACTGG	3 cut(s)	26, 174, 330
BssECI	CCNNGG	4 cut(s)	205, 417, 474, 561
BssMI	GATC	4 cut(s)	162, 292, 325, 496
BssT1I	CCWWGG	1 cut(s)	561
Bst2UI	CCWGG	2 cut(s)	419, 464
Bst4CI	ACNGT	4 cut(s)	104, 170, 300, 623
Bst6I	CTCTTC	1 cut(s)	452
BstBAI	YACGTR	1 cut(s)	306
BstBI	TTCGAA	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	205, 526
BstDEI	CTNAG	3 cut(s)	490, 590, 673
BstDSI	CCRYGG	1 cut(s)	205
BstENI	CCTNNNNNAGG	1 cut(s)	473
BstF5I	GGATG	1 cut(s)	250
BstFNI	CGCG	3 cut(s)	207, 286, 390
BstHHI	GCGC	2 cut(s)	288, 392
BstKTI	GATC	4 cut(s)	165, 295, 328, 499
BstMAI	GTCTC	2 cut(s)	405, 593
BstMBI	GATC	4 cut(s)	162, 292, 325, 496
BstMCI	CGRYCG	1 cut(s)	245
BstNI	CCWGG	2 cut(s)	419, 464
BstNSI	RCATGY	1 cut(s)	505
BstSCI	CCNGG	3 cut(s)	191, 417, 462
BstUI	CGCG	3 cut(s)	207, 286, 390
BstV1I	GCAGC	3 cut(s)	508, 541, 646
BstV2I	GAAGAC	3 cut(s)	170, 228, 689
BsuRI	GGCC	3 cut(s)	422, 467, 528
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	205, 526
CfoI	GCGC	2 cut(s)	288, 392
Cfr13I	GGNCC	1 cut(s)	466
Cfr42I	CCGCGG	1 cut(s)	208
CseI	GACGC	1 cut(s)	527
CviAII	CATG	5 cut(s)	37, 154, 502, 585, 702
DdeI	CTNAG	3 cut(s)	490, 590, 673
DpnI	GATC	4 cut(s)	164, 294, 327, 498
DpnII	GATC	4 cut(s)	162, 292, 325, 496
EaeI	YGGCCR	2 cut(s)	420, 526
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
EciI	GGCGGA	1 cut(s)	449
Ecl136II	GAGCTC	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	261
Eco72I	CACGTG	1 cut(s)	306
EcoICRI	GAGCTC	1 cut(s)	261
EcoNI	CCTNNNNNAGG	1 cut(s)	473
EcoRII	CCWGG	2 cut(s)	417, 462
EcoT14I	CCWWGG	1 cut(s)	561
EcoT22I	ATGCAT	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	5 cut(s)	40, 157, 505, 588, 705
FatI	CATG	5 cut(s)	36, 153, 501, 584, 701
FauI	CCCGC	3 cut(s)	200, 212, 291
FbaI	TGATCA	2 cut(s)	162, 496
Fnu4HI	GCNGC	4 cut(s)	522, 529, 555, 635
FokI	GGATG	1 cut(s)	237
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	4 cut(s)	522, 529, 555, 635
FspBI	CTAG	2 cut(s)	483, 626
GlaI	GCGC	2 cut(s)	287, 391
GluI	GCNGC	4 cut(s)	522, 529, 555, 635
HaeIII	GGCC	3 cut(s)	422, 467, 528
HapII	CCGG	1 cut(s)	193
HgaI	GACGC	1 cut(s)	527
HhaI	GCGC	2 cut(s)	288, 392
Hin1II	CATG	5 cut(s)	40, 157, 505, 588, 705
Hin6I	GCGC	2 cut(s)	286, 390
HinP1I	GCGC	2 cut(s)	286, 390
HinfI	GANTC	6 cut(s)	314, 350, 413, 452, 539, 671
HpaII	CCGG	1 cut(s)	193
HphI	GGTGA	3 cut(s)	16, 430, 527
Hpy166II	GTNNAC	2 cut(s)	303, 682
Hpy188I	TCNGA	7 cut(s)	19, 255, 265, 280, 366, 475, 593
Hpy188III	TCNNGA	7 cut(s)	182, 311, 395, 406, 536, 646, 668
Hpy8I	GTNNAC	2 cut(s)	303, 682
Hpy99I	CGWCG	1 cut(s)	259
HpyAV	CCTTC	3 cut(s)	542, 604, 701
HpyCH4III	ACNGT	4 cut(s)	104, 170, 300, 623
HpyCH4IV	ACGT	2 cut(s)	275, 305
HpyCH4V	TGCA	2 cut(s)	505, 634
HpyF3I	CTNAG	3 cut(s)	490, 590, 673
HpySE526I	ACGT	2 cut(s)	275, 305
Hsp92II	CATG	5 cut(s)	40, 157, 505, 588, 705
HspAI	GCGC	2 cut(s)	286, 390
Ksp22I	TGATCA	2 cut(s)	162, 496
KspI	CCGCGG	1 cut(s)	208
Kzo9I	GATC	4 cut(s)	162, 292, 325, 496
LmnI	GCTCC	2 cut(s)	266, 693
Lsp1109I	GCAGC	3 cut(s)	508, 541, 646
LweI	GCATC	2 cut(s)	541, 652
MaeI	CTAG	2 cut(s)	483, 626
MaeII	ACGT	2 cut(s)	275, 305
MaeIII	GTNAC	2 cut(s)	478, 515
MalI	GATC	4 cut(s)	164, 294, 327, 498
MboI	GATC	4 cut(s)	162, 292, 325, 496
MboII	GAAGA	5 cut(s)	170, 233, 439, 614, 689
MhlI	GDGCHC	1 cut(s)	263
MlsI	TGGCCA	1 cut(s)	422
MluCI	AATT	5 cut(s)	11, 78, 91, 127, 580
MluNI	TGGCCA	1 cut(s)	422
MlyI	GAGTC	3 cut(s)	407, 446, 665
MmeI	TCCRAC	3 cut(s)	6, 42, 278
Mox20I	TGGCCA	1 cut(s)	422
Mph1103I	ATGCAT	1 cut(s)	507
MscI	TGGCCA	1 cut(s)	422
MseI	TTAA	2 cut(s)	111, 596
Msp20I	TGGCCA	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	207
MspI	CCGG	1 cut(s)	193
MspR9I	CCNGG	3 cut(s)	193, 419, 464
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	2 cut(s)	419, 464
MvnI	CGCG	3 cut(s)	207, 286, 390
NciI	CCSGG	1 cut(s)	193
NdeII	GATC	4 cut(s)	162, 292, 325, 496
NlaIII	CATG	5 cut(s)	40, 157, 505, 588, 705
NmuCI	GTSAC	1 cut(s)	515
NsiI	ATGCAT	1 cut(s)	507
NspI	RCATGY	1 cut(s)	505
NspV	TTCGAA	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PctI	GAATGC	1 cut(s)	64
PfeI	GAWTC	3 cut(s)	314, 350, 539
PkrI	GCNGC	4 cut(s)	523, 530, 556, 636
PleI	GAGTC	3 cut(s)	407, 446, 665
PmaCI	CACGTG	1 cut(s)	306
PmlI	CACGTG	1 cut(s)	306
PpsI	GAGTC	3 cut(s)	407, 446, 665
Ppu21I	YACGTR	1 cut(s)	306
Psp124BI	GAGCTC	1 cut(s)	263
Psp6I	CCWGG	2 cut(s)	417, 462
PspCI	CACGTG	1 cut(s)	306
PspGI	CCWGG	2 cut(s)	417, 462
PspPI	GGNCC	1 cut(s)	466
SacI	GAGCTC	1 cut(s)	263
SacII	CCGCGG	1 cut(s)	208
SaqAI	TTAA	2 cut(s)	111, 596
SatI	GCNGC	4 cut(s)	522, 529, 555, 635
Sau3AI	GATC	4 cut(s)	162, 292, 325, 496
Sau96I	GGNCC	1 cut(s)	466
SchI	GAGTC	3 cut(s)	407, 446, 665
ScrFI	CCNGG	3 cut(s)	193, 419, 464
SduI	GDGCHC	1 cut(s)	263
SfaNI	GCATC	2 cut(s)	541, 652
Sfr303I	CCGCGG	1 cut(s)	208
SfuI	TTCGAA	1 cut(s)	353
SgrBI	CCGCGG	1 cut(s)	208
SmlI	CTYRAG	1 cut(s)	646
SmoI	CTYRAG	1 cut(s)	646
Sse9I	AATT	5 cut(s)	11, 78, 91, 127, 580
SsiI	CCGC	8 cut(s)	205, 207, 245, 284, 343, 388, 460, 529
SspMI	CTAG	2 cut(s)	483, 626
SstI	GAGCTC	1 cut(s)	263
StyD4I	CCNGG	3 cut(s)	191, 417, 462
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	4 cut(s)	104, 170, 300, 623
TaiI	ACGT	2 cut(s)	278, 308
TaqI	TCGA	8 cut(s)	241, 291, 324, 353, 396, 405, 450, 669
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	5 cut(s)	11, 78, 91, 127, 580
TauI	GCSGC	1 cut(s)	531
TfiI	GAWTC	3 cut(s)	314, 350, 539
Tru1I	TTAA	2 cut(s)	111, 596
Tru9I	TTAA	2 cut(s)	111, 596
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	3 cut(s)	521, 554, 634
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	5 cut(s)	120, 383, 573, 615, 623
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	1 cut(s)	337
XagI	CCTNNNNNAGG	1 cut(s)	473
XapI	RAATTY	1 cut(s)	580
XceI	RCATGY	1 cut(s)	505
XspI	CTAG	2 cut(s)	483, 626
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.