Rh7CG174200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0006371
Physical Location & Seq
Reverse (-)
14903301 .. 14905689
2389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG174200.1

Sequence Viewer

Length: 381 bp
ATGGAGGAAGACATTGGAGTTCAAGCTCCGCTGCCGCATCCGCCGAGCTCCGAAACCCCAATCTCCGACCCAAACCTCGATCCACCGTCCACGTGTCCCGATTCCACATTCGCTCATACTCAGGACGACGGCTCCGACTCAAAACCTCAGCTGAACCAGACCGATCTATTCAGAGCTCTCGAAGTCGTTGAGAGGGACTCCCTCGCCATCGCGGAGAGCTTCACCTCTCTCTTCTCCTCCCTCCGCCTCGCCCTCTCCGAAGTTACTAGCAACTCGGTTGATCACATGCATTGCTTTGGCGACGCCGCCGGCGGGCTTCAAGAATCCGTGCTTGATGCTGCTACGAAGGGGAATCGCTACATAAATTCATGTCTGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BORCS6

Protein Analysis

126

Amino Acids

13.53

Weight (kDa)

4.31

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BORCS6 PF10157 58 - 125 3.5e-10 BLOC-1-related complex sub-unit 6 C-terminal helix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 212
AciI CCGC 7 cut(s) 29, 35, 41, 212, 244, 306, 312
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 1 cut(s) 364
AcvI CACGTG 1 cut(s) 93
AcyI GRCGYC 1 cut(s) 303
AfiI CCNNNNNNNGG 1 cut(s) 312
AflIII ACRYGT 1 cut(s) 92
AgsI TTSAA 2 cut(s) 23, 320
AluBI AGCT 5 cut(s) 26, 48, 151, 176, 219
AluI AGCT 5 cut(s) 26, 48, 151, 176, 219
Alw21I GWGCWC 2 cut(s) 50, 178
AlwI GGATC 1 cut(s) 74
ApeKI GCWGC 2 cut(s) 31, 338
ApoI RAATTY 1 cut(s) 364
AsuHPI GGTGA 1 cut(s) 214
BanII GRGCYC 2 cut(s) 50, 178
BbrPI CACGTG 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 2 cut(s) 50, 178
BbvCI CCTCAGC 1 cut(s) 147
BbvI GCAGC 2 cut(s) 18, 325
BccI CCATC 1 cut(s) 215
BceAI ACGGC 1 cut(s) 145
BclI TGATCA 1 cut(s) 280
BfaI CTAG 1 cut(s) 267
BisI GCNGC 4 cut(s) 32, 35, 306, 339
BlsI GCNGC 4 cut(s) 33, 36, 307, 340
BmiI GGNNCC 1 cut(s) 133
BmsI GCATC 2 cut(s) 46, 325
BpiI GAAGAC 1 cut(s) 15
BplI GAGNNNNNCTC 2 cut(s) 182, 214
Bpu10I CCTNAGC 1 cut(s) 147
BsaAI YACGTR 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 303
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 1 cut(s) 312
Bse118I RCCGGY 1 cut(s) 308
Bse3DI GCAATG 1 cut(s) 289
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 1 cut(s) 312
BseMI GCAATG 1 cut(s) 289
BseMII CTCAG 3 cut(s) 134, 161, 365
BseRI GAGGAG 1 cut(s) 226
BseXI GCAGC 2 cut(s) 18, 325
Bsh1236I CGCG 1 cut(s) 212
BsiHKAI GWGCWC 2 cut(s) 50, 178
BsiSI CCGG 1 cut(s) 309
BslFI GGGAC 2 cut(s) 81, 209
BslI CCNNNNNNNGG 1 cut(s) 312
BsmFI GGGAC 2 cut(s) 81, 209
Bsp1286I GDGCHC 2 cut(s) 50, 178
Bsp143I GATC 3 cut(s) 79, 163, 280
BspACI CCGC 7 cut(s) 29, 35, 41, 212, 244, 306, 312
BspCNI CTCAG 3 cut(s) 133, 160, 366
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 133
BspPI GGATC 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 289
BsrFI RCCGGY 1 cut(s) 308
BssAI RCCGGY 1 cut(s) 308
BssMI GATC 3 cut(s) 79, 163, 280
BssNI GRCGYC 1 cut(s) 303
Bst4CI ACNGT 1 cut(s) 87
Bst6I CTCTTC 1 cut(s) 236
BstACI GRCGYC 1 cut(s) 303
BstBAI YACGTR 1 cut(s) 93
BstC8I GCNNGC 2 cut(s) 310, 314
BstDEI CTNAG 3 cut(s) 120, 147, 374
BstF5I GGATG 1 cut(s) 37
BstFNI CGCG 1 cut(s) 212
BstKTI GATC 3 cut(s) 82, 166, 283
BstMBI GATC 3 cut(s) 79, 163, 280
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNSI RCATGY 1 cut(s) 289
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 2 cut(s) 18, 325
BstV2I GAAGAC 1 cut(s) 15
BtgZI GCGATG 1 cut(s) 193
BtsCI GGATG 1 cut(s) 37
Cac8I GCNNGC 2 cut(s) 310, 314
Cfr10I RCCGGY 1 cut(s) 308
CseI GACGC 1 cut(s) 311
CviAII CATG 2 cut(s) 286, 369
CviJI RGCY 7 cut(s) 26, 48, 132, 151, 176, 219, 316
CviKI_1 RGCY 7 cut(s) 26, 48, 132, 151, 176, 219, 316
DdeI CTNAG 3 cut(s) 120, 147, 374
DpnI GATC 3 cut(s) 81, 165, 282
DpnII GATC 3 cut(s) 79, 163, 280
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
EciI GGCGGA 2 cut(s) 30, 233
Ecl136II GAGCTC 2 cut(s) 48, 176
Eco24I GRGCYC 2 cut(s) 50, 178
Eco53kI GAGCTC 2 cut(s) 48, 176
Eco72I CACGTG 1 cut(s) 93
EcoICRI GAGCTC 2 cut(s) 48, 176
EcoT22I ATGCAT 1 cut(s) 291
EcoT38I GRGCYC 2 cut(s) 50, 178
FaeI CATG 2 cut(s) 289, 372
FaiI YATR 4 cut(s) 117, 287, 362, 370
FaqI GGGAC 2 cut(s) 81, 209
FatI CATG 2 cut(s) 285, 368
FauI CCCGC 1 cut(s) 305
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 4 cut(s) 32, 35, 306, 339
FokI GGATG 1 cut(s) 24
FriOI GRGCYC 2 cut(s) 50, 178
Fsp4HI GCNGC 4 cut(s) 32, 35, 306, 339
FspBI CTAG 1 cut(s) 267
GluI GCNGC 4 cut(s) 32, 35, 306, 339
HapII CCGG 1 cut(s) 309
HgaI GACGC 1 cut(s) 311
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 2 cut(s) 289, 372
HinfI GANTC 5 cut(s) 101, 137, 197, 323, 352
HpaII CCGG 1 cut(s) 309
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 6 cut(s) 52, 67, 136, 173, 259, 375
Hpy188III TCNNGA 4 cut(s) 98, 122, 179, 320
Hpy8I GTNNAC 1 cut(s) 90
Hpy99I CGWCG 2 cut(s) 131, 305
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 1 cut(s) 87
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 1 cut(s) 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 3 cut(s) 120, 147, 374
HpySE526I ACGT 1 cut(s) 92
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 2 cut(s) 289, 372
KroI GCCGGC 1 cut(s) 308
KroNI GCCGGC 1 cut(s) 310
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 3 cut(s) 79, 163, 280
LmnI GCTCC 3 cut(s) 31, 53, 137
LpnPI CCDG 3 cut(s) 107, 170, 322
Lsp1109I GCAGC 2 cut(s) 18, 325
LweI GCATC 2 cut(s) 46, 325
MaeI CTAG 1 cut(s) 267
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 1 cut(s) 262
MalI GATC 3 cut(s) 81, 165, 282
MboI GATC 3 cut(s) 79, 163, 280
MboII GAAGA 2 cut(s) 20, 223
MhlI GDGCHC 2 cut(s) 50, 178
MluCI AATT 1 cut(s) 364
MlyI GAGTC 2 cut(s) 131, 191
MmeI TCCRAC 2 cut(s) 90, 159
Mph1103I ATGCAT 1 cut(s) 291
MreI CGCCGGCG 1 cut(s) 308
MroNI GCCGGC 1 cut(s) 308
MspA1I CMGCKG 2 cut(s) 31, 151
MspI CCGG 1 cut(s) 309
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 40
NaeI GCCGGC 1 cut(s) 310
NdeII GATC 3 cut(s) 79, 163, 280
NgoMIV GCCGGC 1 cut(s) 308
NlaIII CATG 2 cut(s) 289, 372
NlaIV GGNNCC 1 cut(s) 133
NmeAIII GCCGAG 1 cut(s) 69
NsiI ATGCAT 1 cut(s) 291
NspI RCATGY 1 cut(s) 289
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 255
PdiI GCCGGC 1 cut(s) 310
PfeI GAWTC 3 cut(s) 101, 323, 352
PkrI GCNGC 4 cut(s) 33, 36, 307, 340
PleI GAGTC 2 cut(s) 131, 191
PmaCI CACGTG 1 cut(s) 93
PmlI CACGTG 1 cut(s) 93
PpsI GAGTC 2 cut(s) 131, 191
Ppu21I YACGTR 1 cut(s) 93
Psp124BI GAGCTC 2 cut(s) 50, 178
PspCI CACGTG 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 133
PvuII CAGCTG 1 cut(s) 151
SacI GAGCTC 2 cut(s) 50, 178
SatI GCNGC 4 cut(s) 32, 35, 306, 339
Sau3AI GATC 3 cut(s) 79, 163, 280
SchI GAGTC 2 cut(s) 131, 191
SduI GDGCHC 2 cut(s) 50, 178
SfaNI GCATC 2 cut(s) 46, 325
SgrAI CRCCGGYG 1 cut(s) 308
Sse9I AATT 1 cut(s) 364
SsiI CCGC 7 cut(s) 29, 35, 41, 212, 244, 306, 312
SspMI CTAG 1 cut(s) 267
SstI GAGCTC 2 cut(s) 50, 178
TaaI ACNGT 1 cut(s) 87
TaiI ACGT 1 cut(s) 95
TaqI TCGA 2 cut(s) 78, 180
TaqII GACCGA 1 cut(s) 176
TasI AATT 1 cut(s) 364
TauI GCSGC 2 cut(s) 37, 308
TfiI GAWTC 3 cut(s) 101, 323, 352
TseI GCWGC 2 cut(s) 31, 338
TspDTI ATGAA 1 cut(s) 357
TspGWI ACGGA 1 cut(s) 316
XapI RAATTY 1 cut(s) 364
XceI RCATGY 1 cut(s) 289
XspI CTAG 1 cut(s) 267
Zsp2I ATGCAT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.