Rorug07G0041000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0006371
Physical Location & Seq
Reverse (-)
2885291 .. 2887147
1857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0041000.1

Sequence Viewer

Length: 1059 bp
ATGGCTAACACCAAGAGAACCCAGGTCGATTGTGACGTTGATGGTGATAGTGACGTCATCAAAATCCAAAAACTGGGGAACGTGGATTCATCGCCGTCAGAACAAGCCCTGCCGGAGTTCTTGGCTTTCTCTCCGCGGCGGCCGAGAGTGGTCCTCACCCCGGATCAGTACAAGTATTGCTCCCAGGCTCTCAAGTTCTTCAAAGACAAGTTACAGAACCCTGGCCAGATCAGCCTTGAGTTTGATGAGCTATATGAGCAAGCTGTGATTGAGAAGAGTTGCAATGTGGGTCTCAGCAGTGCTAATTGGAGGAAGAATCGGTACGATGAGATCTTGCCGTTTGACGAAAACAGGGTCGTTCTGAAGGGCTCTTCCACCAGGGGAGGTGACTACATTAATGCCAGCTTTGTCACGACTAGCTCGTCTCGTTTCATTGCAACACAAGGTCCACTTCCGAATACATATGAGGATTTTTGGGAGATGGTGATCCAGTACCGGTGCCCTGTTGTCATTATGCTTACTAGATTGGATACGGGTAAATGTGGAGATTATTTTCGGGCAGAGGGTGAAAGAGAATTCGGAAATGTGTGTATTGTCACAAAGTGGATGAGAAGTAGCGAGTCTAGTGAAAGTAATTCTTCGTTAGTGCTGCGGCTTTTGGAGGTGAGGCGTAAGGCAGGGTCAGAGGAGCCGCCTGTGTCTGTGTTGCATGTTCACTATCCTGAATGGCCTGACCATGGAGTTCCCTCAGACACAAGTGATGTTCGTGAGATGTTGAAAGGATTGATATATCAAGTGGCGCCACCAGAGCTTGGGCCGGTTGTGGTCCATTGTAGTGCAGGTATTGGGAGAACCGGAACATATTGCACAATTCATGATACAATGAAGAGAATTCTTTCCGGGGATATGTCTGCTTTGGATCTTGTTGGTACAATAGCCACATTCAGGTCTCAGCGAGATGGAATGGTCGAGACGCTGAAGCAATATCGGTTCTGTTATTCTGCCATCGTCGATGAATTGGAAGACCTCATCTCAAATCATGGAGATGAGAATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BORCS6

Protein Analysis

352

Amino Acids

39.6

Weight (kDa)

5.17

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Y_phosphatase PF00102 103 - 337 1.2e-65 Protein-tyrosine phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 421
AatII GACGTC 1 cut(s) 57
Acc36I ACCTGC 1 cut(s) 830
AccB1I GGYRCC 2 cut(s) 498, 799
AccB7I CCANNNNNTGG 2 cut(s) 73, 812
AccII CGCG 1 cut(s) 136
AciI CCGC 5 cut(s) 134, 136, 139, 652, 692
AclWI GGATC 3 cut(s) 171, 481, 927
AcoI YGGCCR 2 cut(s) 140, 223
AcsI RAATTY 2 cut(s) 575, 891
AcuI CTGAAG 2 cut(s) 383, 998
AcyI GRCGYC 2 cut(s) 54, 800
AdeI CACNNNGTG 1 cut(s) 603
AfaI GTAC 4 cut(s) 170, 323, 494, 931
AfiI CCNNNNNNNGG 5 cut(s) 73, 160, 737, 812, 945
AgeI ACCGGT 1 cut(s) 495
AgsI TTSAA 2 cut(s) 202, 778
AjnI CCWGG 4 cut(s) 21, 183, 220, 377
AluBI AGCT 5 cut(s) 250, 263, 405, 420, 811
AluI AGCT 5 cut(s) 250, 263, 405, 420, 811
Alw26I GTCTC 4 cut(s) 296, 429, 954, 965
AlwI GGATC 3 cut(s) 171, 481, 927
AoxI GGCC 4 cut(s) 140, 223, 728, 815
ApeKI GCWGC 1 cut(s) 649
ApoI RAATTY 2 cut(s) 575, 891
ArsI GACNNNNNNTTYG 2 cut(s) 339, 371
AseI ATTAAT 1 cut(s) 396
AsiGI ACCGGT 1 cut(s) 495
Asp700I GAANNNNTTC 1 cut(s) 895
AspLEI GCGC 1 cut(s) 802
AspS9I GGNCC 4 cut(s) 151, 446, 815, 826
AsuC2I CCSGG 2 cut(s) 161, 901
AsuHPI GGTGA 6 cut(s) 56, 148, 398, 496, 578, 676
AvaII GGWCC 3 cut(s) 151, 446, 826
BaeGI GKGCMC 1 cut(s) 503
BalI TGGCCA 1 cut(s) 225
BanI GGYRCC 2 cut(s) 498, 799
BanII GRGCYC 1 cut(s) 371
BarI GAAGNNNNNNTAC 2 cut(s) 305, 337
BbsI GAAGAC 1 cut(s) 1029
BbvI GCAGC 1 cut(s) 636
BccI CCATC 4 cut(s) 35, 475, 953, 1013
BceAI ACGGC 2 cut(s) 79, 322
BciT130I CCWGG 4 cut(s) 23, 185, 222, 379
BciVI GTATCC 1 cut(s) 523
BcnI CCSGG 2 cut(s) 161, 901
BcoDI GTCTC 4 cut(s) 296, 429, 954, 965
BfaI CTAG 3 cut(s) 417, 522, 624
BfoI RGCGCY 1 cut(s) 803
BfuAI ACCTGC 1 cut(s) 830
BfuI GTATCC 1 cut(s) 523
BglII AGATCT 1 cut(s) 330
BisI GCNGC 5 cut(s) 137, 140, 650, 653, 692
BlsI GCNGC 5 cut(s) 138, 141, 651, 654, 693
Bme1390I CCNGG 6 cut(s) 23, 161, 185, 222, 379, 901
Bme18I GGWCC 3 cut(s) 151, 446, 826
BmgT120I GGNCC 4 cut(s) 151, 446, 815, 826
BmiI GGNNCC 3 cut(s) 500, 690, 801
BmrFI CCNGG 6 cut(s) 23, 161, 185, 222, 379, 901
BmrI ACTGGG 1 cut(s) 83
BmuI ACTGGG 1 cut(s) 83
BpiI GAAGAC 1 cut(s) 1029
BplI GAGNNNNNCTC 2 cut(s) 138, 170
BpuEI CTTGAG 2 cut(s) 176, 257
BpuMI CCSGG 2 cut(s) 161, 901
BsaBI GATNNNNATC 1 cut(s) 485
BsaHI GRCGYC 2 cut(s) 54, 800
BsaI GGTCTC 2 cut(s) 296, 954
BsaJI CCNNGG 8 cut(s) 21, 134, 159, 183, 220, 378, 736, 900
BsaWI WCCGGW 2 cut(s) 495, 854
Bsc4I CCNNNNNNNGG 5 cut(s) 73, 160, 737, 812, 945
Bse118I RCCGGY 2 cut(s) 495, 817
Bse1I ACTGG 2 cut(s) 78, 490
Bse3DI GCAATG 2 cut(s) 289, 432
Bse8I GATNNNNATC 1 cut(s) 485
BseBI CCWGG 4 cut(s) 23, 185, 222, 379
BseDI CCNNGG 8 cut(s) 21, 134, 159, 183, 220, 378, 736, 900
BseGI GGATG 1 cut(s) 612
BseJI GATNNNNATC 1 cut(s) 485
BseLI CCNNNNNNNGG 5 cut(s) 73, 160, 737, 812, 945
BseMI GCAATG 2 cut(s) 289, 432
BseMII CTCAG 3 cut(s) 307, 762, 965
BseNI ACTGG 2 cut(s) 78, 490
BseRI GAGGAG 1 cut(s) 701
BseSI GKGCMC 1 cut(s) 503
BseX3I CGGCCG 1 cut(s) 140
BseXI GCAGC 1 cut(s) 636
BsgI GTGCAG 1 cut(s) 858
Bsh1236I CGCG 1 cut(s) 136
Bsh1285I CGRYCG 1 cut(s) 143
BshFI GGCC 4 cut(s) 142, 225, 730, 817
BshNI GGYRCC 2 cut(s) 498, 799
BshTI ACCGGT 1 cut(s) 495
BsiEI CGRYCG 1 cut(s) 143
BsiSI CCGG 6 cut(s) 113, 161, 496, 818, 855, 900
BslI CCNNNNNNNGG 5 cut(s) 73, 160, 737, 812, 945
BsmAI GTCTC 4 cut(s) 296, 429, 954, 965
BsmBI CGTCTC 2 cut(s) 429, 965
BsnI GGCC 4 cut(s) 142, 225, 730, 817
Bso31I GGTCTC 2 cut(s) 296, 954
Bsp1286I GDGCHC 2 cut(s) 371, 503
Bsp143I GATC 5 cut(s) 163, 228, 330, 486, 919
Bsp19I CCATGG 1 cut(s) 736
BspACI CCGC 5 cut(s) 134, 136, 139, 652, 692
BspANI GGCC 4 cut(s) 142, 225, 730, 817
BspCNI CTCAG 3 cut(s) 306, 761, 964
BspFNI CGCG 1 cut(s) 136
BspHI TCATGA 1 cut(s) 874
BspLI GGNNCC 3 cut(s) 500, 690, 801
BspMI ACCTGC 1 cut(s) 830
BspPI GGATC 3 cut(s) 171, 481, 927
BspQI GCTCTTC 1 cut(s) 376
BspT107I GGYRCC 2 cut(s) 498, 799
BspTNI GGTCTC 2 cut(s) 296, 954
BsrDI GCAATG 2 cut(s) 289, 432
BsrFI RCCGGY 2 cut(s) 495, 817
BsrI ACTGG 2 cut(s) 78, 490
BssAI RCCGGY 2 cut(s) 495, 817
BssECI CCNNGG 8 cut(s) 21, 134, 159, 183, 220, 378, 736, 900
BssMI GATC 5 cut(s) 163, 228, 330, 486, 919
BssNI GRCGYC 2 cut(s) 54, 800
BssT1I CCWWGG 1 cut(s) 736
Bst2UI CCWGG 4 cut(s) 23, 185, 222, 379
Bst6I CTCTTC 3 cut(s) 269, 376, 881
BstACI GRCGYC 2 cut(s) 54, 800
BstC8I GCNNGC 2 cut(s) 261, 403
BstDEI CTNAG 3 cut(s) 293, 748, 951
BstDSI CCRYGG 2 cut(s) 134, 736
BstF5I GGATG 1 cut(s) 612
BstFNI CGCG 1 cut(s) 136
BstH2I RGCGCY 1 cut(s) 803
BstHHI GCGC 1 cut(s) 802
BstKTI GATC 5 cut(s) 166, 231, 333, 489, 922
BstMAI GTCTC 4 cut(s) 296, 429, 954, 965
BstMBI GATC 5 cut(s) 163, 228, 330, 486, 919
BstMCI CGRYCG 1 cut(s) 143
BstMWI GCNNNNNNNGC 3 cut(s) 231, 256, 808
BstNI CCWGG 4 cut(s) 23, 185, 222, 379
BstNSI RCATGY 1 cut(s) 713
BstSCI CCNGG 6 cut(s) 21, 159, 183, 220, 377, 899
BstSLI GKGCMC 1 cut(s) 503
BstUI CGCG 1 cut(s) 136
BstV1I GCAGC 1 cut(s) 636
BstV2I GAAGAC 1 cut(s) 1029
BstX2I RGATCY 2 cut(s) 330, 919
BstYI RGATCY 2 cut(s) 330, 919
BstZI CGGCCG 1 cut(s) 140
BsuI GTATCC 1 cut(s) 523
BsuRI GGCC 4 cut(s) 142, 225, 730, 817
BtgI CCRYGG 2 cut(s) 134, 736
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 1 cut(s) 612
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 1 cut(s) 304
BveI ACCTGC 1 cut(s) 830
Cac8I GCNNGC 2 cut(s) 261, 403
CciI TCATGA 1 cut(s) 874
CfoI GCGC 1 cut(s) 802
Cfr10I RCCGGY 2 cut(s) 495, 817
Cfr13I GGNCC 4 cut(s) 151, 446, 815, 826
Cfr42I CCGCGG 1 cut(s) 137
CseI GACGC 1 cut(s) 982
Csp6I GTAC 4 cut(s) 169, 322, 493, 930
CspAI ACCGGT 1 cut(s) 495
CviAII CATG 4 cut(s) 710, 737, 875, 1040
CviQI GTAC 4 cut(s) 169, 322, 493, 930
DdeI CTNAG 3 cut(s) 293, 748, 951
DinI GGCGCC 1 cut(s) 801
DpnI GATC 5 cut(s) 165, 230, 332, 488, 921
DpnII GATC 5 cut(s) 163, 228, 330, 486, 919
DraIII CACNNNGTG 1 cut(s) 603
DrdI GACNNNNNNGTC 1 cut(s) 421
DseDI GACNNNNNNGTC 1 cut(s) 421
EaeI YGGCCR 2 cut(s) 140, 223
EagI CGGCCG 1 cut(s) 140
Eam1104I CTCTTC 3 cut(s) 269, 376, 881
EarI CTCTTC 3 cut(s) 269, 376, 881
EclXI CGGCCG 1 cut(s) 140
Eco130I CCWWGG 1 cut(s) 736
Eco24I GRGCYC 1 cut(s) 371
Eco31I GGTCTC 2 cut(s) 296, 954
Eco47I GGWCC 3 cut(s) 151, 446, 826
Eco52I CGGCCG 1 cut(s) 140
Eco57I CTGAAG 2 cut(s) 383, 998
EcoRI GAATTC 2 cut(s) 575, 891
EcoRII CCWGG 4 cut(s) 21, 183, 220, 377
EcoT14I CCWWGG 1 cut(s) 736
EcoT38I GRGCYC 1 cut(s) 371
EgeI GGCGCC 1 cut(s) 801
EheI GGCGCC 1 cut(s) 801
ErhI CCWWGG 1 cut(s) 736
Esp3I CGTCTC 2 cut(s) 429, 965
FaeI CATG 4 cut(s) 713, 740, 878, 1043
FalI AAGNNNNNCTT 4 cut(s) 435, 467, 622, 654
FatI CATG 4 cut(s) 709, 736, 874, 1039
FauNDI CATATG 1 cut(s) 463
Fnu4HI GCNGC 5 cut(s) 137, 140, 650, 653, 692
FokI GGATG 1 cut(s) 619
FriOI GRGCYC 1 cut(s) 371
Fsp4HI GCNGC 5 cut(s) 137, 140, 650, 653, 692
FspBI CTAG 3 cut(s) 417, 522, 624
GlaI GCGC 1 cut(s) 801
GluI GCNGC 5 cut(s) 137, 140, 650, 653, 692
HaeII RGCGCY 1 cut(s) 803
HaeIII GGCC 4 cut(s) 142, 225, 730, 817
HapII CCGG 6 cut(s) 113, 161, 496, 818, 855, 900
HgaI GACGC 1 cut(s) 982
HhaI GCGC 1 cut(s) 802
Hin1I GRCGYC 2 cut(s) 54, 800
Hin1II CATG 4 cut(s) 713, 740, 878, 1043
Hin6I GCGC 1 cut(s) 800
HinP1I GCGC 1 cut(s) 800
HinfI GANTC 3 cut(s) 86, 316, 620
HpaII CCGG 6 cut(s) 113, 161, 496, 818, 855, 900
HphI GGTGA 6 cut(s) 56, 148, 398, 496, 578, 676
Hpy166II GTNNAC 2 cut(s) 449, 715
Hpy188I TCNGA 6 cut(s) 100, 363, 456, 581, 685, 751
Hpy188III TCNNGA 5 cut(s) 412, 722, 767, 875, 970
Hpy8I GTNNAC 2 cut(s) 449, 715
Hpy99I CGWCG 1 cut(s) 1013
HpyAV CCTTC 1 cut(s) 358
HpyCH4IV ACGT 3 cut(s) 36, 54, 81
HpyCH4V TGCA 5 cut(s) 282, 437, 709, 839, 867
HpyF10VI GCNNNNNNNGC 3 cut(s) 231, 256, 808
HpyF3I CTNAG 3 cut(s) 293, 748, 951
HpySE526I ACGT 3 cut(s) 36, 54, 81
Hsp92I GRCGYC 2 cut(s) 54, 800
Hsp92II CATG 4 cut(s) 713, 740, 878, 1043
HspAI GCGC 1 cut(s) 800
KasI GGCGCC 1 cut(s) 799
KspI CCGCGG 1 cut(s) 137
Kzo9I GATC 5 cut(s) 163, 228, 330, 486, 919
LguI GCTCTTC 1 cut(s) 376
LmnI GCTCC 2 cut(s) 185, 688
Lsp1109I GCAGC 1 cut(s) 636
MaeI CTAG 3 cut(s) 417, 522, 624
MaeII ACGT 3 cut(s) 36, 54, 81
MaeIII GTNAC 6 cut(s) 32, 50, 210, 386, 409, 595
MalI GATC 5 cut(s) 165, 230, 332, 488, 921
MboI GATC 5 cut(s) 163, 228, 330, 486, 919
MboII GAAGA 7 cut(s) 190, 286, 325, 363, 630, 898, 1034
MflI RGATCY 2 cut(s) 330, 919
MhlI GDGCHC 2 cut(s) 371, 503
MlsI TGGCCA 1 cut(s) 225
MluCI AATT 7 cut(s) 304, 575, 634, 870, 891, 1016, 1054
MluNI TGGCCA 1 cut(s) 225
Mly113I GGCGCC 1 cut(s) 800
MlyI GAGTC 1 cut(s) 629
Mox20I TGGCCA 1 cut(s) 225
MroXI GAANNNNTTC 1 cut(s) 895
MscI TGGCCA 1 cut(s) 225
MseI TTAA 1 cut(s) 396
MslI CAYNNNNRTG 2 cut(s) 834, 1044
Msp20I TGGCCA 1 cut(s) 225
MspA1I CMGCKG 1 cut(s) 136
MspI CCGG 6 cut(s) 113, 161, 496, 818, 855, 900
MspR9I CCNGG 6 cut(s) 23, 161, 185, 222, 379, 901
MvaI CCWGG 4 cut(s) 23, 185, 222, 379
MvnI CGCG 1 cut(s) 136
MwoI GCNNNNNNNGC 3 cut(s) 231, 256, 808
NarI GGCGCC 1 cut(s) 800
NciI CCSGG 2 cut(s) 161, 901
NcoI CCATGG 1 cut(s) 736
NdeI CATATG 1 cut(s) 463
NdeII GATC 5 cut(s) 163, 228, 330, 486, 919
NlaIII CATG 4 cut(s) 713, 740, 878, 1043
NlaIV GGNNCC 3 cut(s) 500, 690, 801
NmeAIII GCCGAG 1 cut(s) 168
NmuCI GTSAC 5 cut(s) 32, 50, 386, 409, 595
NspI RCATGY 1 cut(s) 713
PagI TCATGA 1 cut(s) 874
PciSI GCTCTTC 1 cut(s) 376
PcsI WCGNNNNNNNCGW 2 cut(s) 33, 419
PdmI GAANNNNTTC 1 cut(s) 895
PfeI GAWTC 2 cut(s) 86, 316
PflMI CCANNNNNTGG 2 cut(s) 73, 812
PinAI ACCGGT 1 cut(s) 495
PkrI GCNGC 5 cut(s) 138, 141, 651, 654, 693
PleI GAGTC 1 cut(s) 628
PluTI GGCGCC 1 cut(s) 803
PpsI GAGTC 1 cut(s) 628
PshBI ATTAAT 1 cut(s) 396
Psp6I CCWGG 4 cut(s) 21, 183, 220, 377
PspGI CCWGG 4 cut(s) 21, 183, 220, 377
PspN4I GGNNCC 3 cut(s) 500, 690, 801
PspPI GGNCC 4 cut(s) 151, 446, 815, 826
PsuI RGATCY 2 cut(s) 330, 919
RsaI GTAC 4 cut(s) 170, 323, 494, 931
RsaNI GTAC 4 cut(s) 169, 322, 493, 930
RseI CAYNNNNRTG 2 cut(s) 834, 1044
SacII CCGCGG 1 cut(s) 137
SapI GCTCTTC 1 cut(s) 376
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 5 cut(s) 137, 140, 650, 653, 692
Sau3AI GATC 5 cut(s) 163, 228, 330, 486, 919
Sau96I GGNCC 4 cut(s) 151, 446, 815, 826
SchI GAGTC 1 cut(s) 629
ScrFI CCNGG 6 cut(s) 23, 161, 185, 222, 379, 901
SduI GDGCHC 2 cut(s) 371, 503
SfoI GGCGCC 1 cut(s) 801
Sfr303I CCGCGG 1 cut(s) 137
SgrBI CCGCGG 1 cut(s) 137
SinI GGWCC 3 cut(s) 151, 446, 826
SmiMI CAYNNNNRTG 2 cut(s) 834, 1044
SmlI CTYRAG 2 cut(s) 191, 236
SmoI CTYRAG 2 cut(s) 191, 236
Sse9I AATT 7 cut(s) 304, 575, 634, 870, 891, 1016, 1054
SsiI CCGC 5 cut(s) 134, 136, 139, 652, 692
SspDI GGCGCC 1 cut(s) 799
SspMI CTAG 3 cut(s) 417, 522, 624
StyD4I CCNGG 6 cut(s) 21, 159, 183, 220, 377, 899
StyI CCWWGG 1 cut(s) 736
TaiI ACGT 3 cut(s) 39, 57, 84
TaqI TCGA 3 cut(s) 27, 969, 1011
TasI AATT 7 cut(s) 304, 575, 634, 870, 891, 1016, 1054
TatI WGTACW 1 cut(s) 168
TauI GCSGC 4 cut(s) 139, 142, 655, 694
TfiI GAWTC 2 cut(s) 86, 316
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TscAI CASTG 1 cut(s) 304
TseFI GTSAC 5 cut(s) 32, 50, 386, 409, 595
TseI GCWGC 1 cut(s) 649
Tsp45I GTSAC 5 cut(s) 32, 50, 386, 409, 595
TspDTI ATGAA 5 cut(s) 78, 421, 863, 899, 1029
TspRI CASTG 1 cut(s) 304
Van91I CCANNNNNTGG 2 cut(s) 73, 812
VpaK11BI GGWCC 3 cut(s) 151, 446, 826
VspI ATTAAT 1 cut(s) 396
XapI RAATTY 2 cut(s) 575, 891
XceI RCATGY 1 cut(s) 713
XmnI GAANNNNTTC 1 cut(s) 895
XspI CTAG 3 cut(s) 417, 522, 624
ZraI GACGTC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.