Prupe.5G100600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0006371
Physical Location & Seq
Forward (+)
10852040 .. 10854874
2835 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G100600.3

Sequence Viewer

Length: 489 bp
ATGGAGGAAGACGGAGGAGAACGAGCTCAACGGCGCCATCCGACGAGCTCCGAAACCCTAATCTCAGAGCCACACCTGGATCCACCGTCCACGTGTTCTGAAACTACACTCCATCCCGGTGAGGAGGACCGCACGGAATCGAAACCCGAGCTGAACCAGACCGAAATATTCCGAACTCTCGAAGTGGTCGAGAGAGACTCTCTCTCCATCGCCGACAGCTTCACCACTCTCTTCGCCTCCCTTCGCCTGGCTCTTTCTGAGGTCACTAGCAACTCGGTTGATCACATGCATTGCTTTAGCGAGGCTGCTGGCCGCCTTCAAGAATCCGTGCTTGATTGTGCTACCAAGGGAAATCGGTATATAAATTCAAGTCTCAGATTGAATGAAGAAATGAAGGGCATAGACAGTCTAGCATTGCAGCTAAAAGTCTTGAGGAGAAATGTTGATGCTCTAGACTCAGGTGTTAACAAGCTCCTCCGACTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BORCS6

Protein Analysis

163

Amino Acids

18.05

Weight (kDa)

4.95

Isoelectric Point (pI)

58.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 33
AciI CCGC 2 cut(s) 130, 313
AclWI GGATC 2 cut(s) 74, 87
AcoI YGGCCR 1 cut(s) 310
AcsI RAATTY 1 cut(s) 364
AcvI CACGTG 1 cut(s) 93
AcyI GRCGYC 1 cut(s) 34
AfiI CCNNNNNNNGG 1 cut(s) 247
AflIII ACRYGT 1 cut(s) 92
AgsI TTSAA 3 cut(s) 320, 369, 382
AjnI CCWGG 2 cut(s) 75, 246
AluBI AGCT 6 cut(s) 26, 48, 151, 219, 421, 472
AluI AGCT 6 cut(s) 26, 48, 151, 219, 421, 472
Alw21I GWGCWC 2 cut(s) 28, 50
Alw26I GTCTC 2 cut(s) 189, 377
AlwI GGATC 2 cut(s) 74, 87
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 2 cut(s) 305, 418
ApoI RAATTY 1 cut(s) 364
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 127
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 2 cut(s) 131, 214
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 1 cut(s) 127
BamHI GGATCC 1 cut(s) 79
BanI GGYRCC 1 cut(s) 33
BanII GRGCYC 2 cut(s) 28, 50
BbrPI CACGTG 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 2 cut(s) 28, 50
BbvI GCAGC 2 cut(s) 292, 430
BccI CCATC 3 cut(s) 45, 120, 215
BceAI ACGGC 1 cut(s) 47
BciT130I CCWGG 2 cut(s) 77, 248
BclI TGATCA 1 cut(s) 280
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 189, 377
BfaI CTAG 3 cut(s) 267, 410, 452
BfoI RGCGCY 1 cut(s) 37
BisI GCNGC 3 cut(s) 306, 313, 419
BlsI GCNGC 3 cut(s) 307, 314, 420
Bme1390I CCNGG 3 cut(s) 77, 117, 248
Bme18I GGWCC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 2 cut(s) 35, 81
BmrFI CCNGG 3 cut(s) 77, 117, 248
BmsI GCATC 1 cut(s) 436
BpiI GAAGAC 1 cut(s) 15
BplI GAGNNNNNCTC 6 cut(s) 182, 214, 184, 216, 186, 218
BpuEI CTTGAG 1 cut(s) 451
BpuMI CCSGG 1 cut(s) 117
BsaAI YACGTR 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 345
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse3DI GCAATG 2 cut(s) 289, 413
BseBI CCWGG 2 cut(s) 77, 248
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 2 cut(s) 37, 112
BseLI CCNNNNNNNGG 1 cut(s) 247
BseMI GCAATG 2 cut(s) 289, 413
BseMII CTCAG 4 cut(s) 78, 249, 388, 471
BseRI GAGGAG 4 cut(s) 30, 137, 448, 464
BseXI GCAGC 2 cut(s) 292, 430
BshFI GGCC 1 cut(s) 312
BshNI GGYRCC 1 cut(s) 33
BsiHKAI GWGCWC 2 cut(s) 28, 50
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 1 cut(s) 117
BslI CCNNNNNNNGG 1 cut(s) 247
BsmAI GTCTC 2 cut(s) 189, 377
BsnI GGCC 1 cut(s) 312
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 2 cut(s) 28, 50
Bsp143I GATC 2 cut(s) 79, 280
BspACI CCGC 2 cut(s) 130, 313
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 4 cut(s) 77, 250, 387, 470
BspLI GGNNCC 2 cut(s) 35, 81
BspPI GGATC 2 cut(s) 74, 87
BspT107I GGYRCC 1 cut(s) 33
BsrDI GCAATG 2 cut(s) 289, 413
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 2 cut(s) 79, 280
BssNI GRCGYC 1 cut(s) 34
BssT1I CCWWGG 1 cut(s) 345
Bst2UI CCWGG 2 cut(s) 77, 248
Bst4CI ACNGT 2 cut(s) 87, 407
Bst6I CTCTTC 1 cut(s) 236
BstACI GRCGYC 1 cut(s) 34
BstBAI YACGTR 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 4 cut(s) 64, 258, 374, 457
BstF5I GGATG 2 cut(s) 37, 112
BstH2I RGCGCY 1 cut(s) 37
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 2 cut(s) 82, 283
BstMAI GTCTC 2 cut(s) 189, 377
BstMBI GATC 2 cut(s) 79, 280
BstNI CCWGG 2 cut(s) 77, 248
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 3 cut(s) 75, 115, 246
BstV1I GCAGC 2 cut(s) 292, 430
BstV2I GAAGAC 1 cut(s) 15
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BsuRI GGCC 1 cut(s) 312
BtgZI GCGATG 1 cut(s) 193
BtsCI GGATG 2 cut(s) 37, 112
Cac8I GCNNGC 1 cut(s) 310
CfoI GCGC 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 127
CviAII CATG 2 cut(s) 286, 486
DdeI CTNAG 4 cut(s) 64, 258, 374, 457
DinI GGCGCC 1 cut(s) 35
DpnI GATC 2 cut(s) 81, 282
DpnII GATC 2 cut(s) 79, 280
EaeI YGGCCR 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Ecl136II GAGCTC 2 cut(s) 26, 48
Eco130I CCWWGG 1 cut(s) 345
Eco24I GRGCYC 2 cut(s) 28, 50
Eco47I GGWCC 1 cut(s) 127
Eco53kI GAGCTC 2 cut(s) 26, 48
Eco72I CACGTG 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 146
EcoICRI GAGCTC 2 cut(s) 26, 48
EcoRII CCWGG 2 cut(s) 75, 246
EcoT14I CCWWGG 1 cut(s) 345
EcoT22I ATGCAT 1 cut(s) 291
EcoT38I GRGCYC 2 cut(s) 28, 50
EgeI GGCGCC 1 cut(s) 35
EheI GGCGCC 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 2 cut(s) 289, 489
FaiI YATR 5 cut(s) 287, 360, 362, 401, 487
FatI CATG 2 cut(s) 285, 485
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 3 cut(s) 306, 313, 419
FokI GGATG 2 cut(s) 24, 99
FriOI GRGCYC 2 cut(s) 28, 50
Fsp4HI GCNGC 3 cut(s) 306, 313, 419
FspBI CTAG 3 cut(s) 267, 410, 452
GlaI GCGC 1 cut(s) 35
GluI GCNGC 3 cut(s) 306, 313, 419
HaeII RGCGCY 1 cut(s) 37
HaeIII GGCC 1 cut(s) 312
HapII CCGG 1 cut(s) 117
HhaI GCGC 1 cut(s) 36
Hin1I GRCGYC 1 cut(s) 34
Hin1II CATG 2 cut(s) 289, 489
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HinfI GANTC 4 cut(s) 137, 197, 323, 455
HpaI GTTAAC 1 cut(s) 466
HpaII CCGG 1 cut(s) 117
HphI GGTGA 2 cut(s) 131, 214
Hpy166II GTNNAC 2 cut(s) 90, 466
Hpy188I TCNGA 8 cut(s) 42, 52, 67, 100, 173, 259, 377, 479
Hpy188III TCNNGA 5 cut(s) 179, 190, 320, 430, 452
Hpy8I GTNNAC 2 cut(s) 90, 466
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 3 cut(s) 251, 326, 388
HpyCH4III ACNGT 2 cut(s) 87, 407
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 2 cut(s) 289, 418
HpyF3I CTNAG 4 cut(s) 64, 258, 374, 457
HpySE526I ACGT 1 cut(s) 92
Hsp92I GRCGYC 1 cut(s) 34
Hsp92II CATG 2 cut(s) 289, 489
HspAI GCGC 1 cut(s) 34
KasI GGCGCC 1 cut(s) 33
Ksp22I TGATCA 1 cut(s) 280
KspAI GTTAAC 1 cut(s) 466
Kzo9I GATC 2 cut(s) 79, 280
LmnI GCTCC 2 cut(s) 53, 477
LpnPI CCDG 8 cut(s) 62, 89, 130, 170, 233, 260, 294, 444
Lsp1109I GCAGC 2 cut(s) 292, 430
LweI GCATC 1 cut(s) 436
MaeI CTAG 3 cut(s) 267, 410, 452
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 1 cut(s) 262
MalI GATC 2 cut(s) 81, 282
MboI GATC 2 cut(s) 79, 280
MboII GAAGA 3 cut(s) 20, 223, 398
MflI RGATCY 1 cut(s) 79
MhlI GDGCHC 2 cut(s) 28, 50
MluCI AATT 1 cut(s) 364
Mly113I GGCGCC 1 cut(s) 34
MlyI GAGTC 2 cut(s) 191, 449
MmeI TCCRAC 1 cut(s) 65
MnlI CCTC 8 cut(s) 8, 115, 118, 247, 253, 295, 426, 485
Mph1103I ATGCAT 1 cut(s) 291
MseI TTAA 1 cut(s) 465
MslI CAYNNNNRTG 1 cut(s) 117
MspI CCGG 1 cut(s) 117
MspR9I CCNGG 3 cut(s) 77, 117, 248
MvaI CCWGG 2 cut(s) 77, 248
NarI GGCGCC 1 cut(s) 34
NciI CCSGG 1 cut(s) 117
NdeII GATC 2 cut(s) 79, 280
NlaIII CATG 2 cut(s) 289, 489
NlaIV GGNNCC 2 cut(s) 35, 81
NmuCI GTSAC 1 cut(s) 262
NsiI ATGCAT 1 cut(s) 291
NspI RCATGY 1 cut(s) 289
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PfeI GAWTC 2 cut(s) 137, 323
PkrI GCNGC 3 cut(s) 307, 314, 420
PleI GAGTC 2 cut(s) 191, 449
PluTI GGCGCC 1 cut(s) 37
PmaCI CACGTG 1 cut(s) 93
PmlI CACGTG 1 cut(s) 93
PpsI GAGTC 2 cut(s) 191, 449
Ppu21I YACGTR 1 cut(s) 93
Psp124BI GAGCTC 2 cut(s) 28, 50
Psp6I CCWGG 2 cut(s) 75, 246
PspCI CACGTG 1 cut(s) 93
PspGI CCWGG 2 cut(s) 75, 246
PspN4I GGNNCC 2 cut(s) 35, 81
PspPI GGNCC 1 cut(s) 127
PsuI RGATCY 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 117
SacI GAGCTC 2 cut(s) 28, 50
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 3 cut(s) 306, 313, 419
Sau3AI GATC 2 cut(s) 79, 280
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 2 cut(s) 191, 449
ScrFI CCNGG 3 cut(s) 77, 117, 248
SduI GDGCHC 2 cut(s) 28, 50
SfaNI GCATC 1 cut(s) 436
SfoI GGCGCC 1 cut(s) 35
SinI GGWCC 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 430
SmoI CTYRAG 1 cut(s) 430
Sse9I AATT 1 cut(s) 364
SsiI CCGC 2 cut(s) 130, 313
SspDI GGCGCC 1 cut(s) 33
SspI AATATT 1 cut(s) 168
SspMI CTAG 3 cut(s) 267, 410, 452
SstI GAGCTC 2 cut(s) 28, 50
StyD4I CCNGG 3 cut(s) 75, 115, 246
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 2 cut(s) 87, 407
TaiI ACGT 1 cut(s) 95
TaqI TCGA 3 cut(s) 140, 180, 189
TaqII GACCGA 1 cut(s) 176
TasI AATT 1 cut(s) 364
TauI GCSGC 1 cut(s) 315
TfiI GAWTC 2 cut(s) 137, 323
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 2 cut(s) 305, 418
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 2 cut(s) 399, 407
TspGWI ACGGA 3 cut(s) 27, 149, 316
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 1 cut(s) 364
XbaI TCTAGA 1 cut(s) 451
XceI RCATGY 1 cut(s) 289
XspI CTAG 3 cut(s) 267, 410, 452
Zsp2I ATGCAT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.