Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001164.1

Orthogroup ID

OG0006371

Physical Location & Seq

Genomic Coordinates Reverse (-)

10410 .. 11968

Gene Structure 1559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001164.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atggaggaagacggaggagatcaagctccgctgccgcatccgccgagctccgaaaccccaatctccgacccaaacctcgatccaccgtccacgtgtcccgattccacagtcgctcatactgaggacgacggctccgactcaaaacctcagctgaaccagaccgatctattcagagctgtcgaagtcgtcgagagggactccctcgccatcgcggagagcttcaactctctcttctcctccctccgcctcgccctctccgaagttactagcaactcggttgatcacatgcattgctttggcgacgccgccggccggcttcaagaatccgtgcttgatgctgctacgaaggggaatcgctacataaattcatgtctgagattaaatgaagaaatgaagggtgttgatagtctagccctgcagctaaaactcttgagaagaaatgttgatgctctagactctggagttaacaggctccttcgccttccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BORCS6

Protein Analysis

162

Amino Acids

17.59

Weight (kDa)

4.52

Isoelectric Point (pI)

54.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23330 AT4G23330 AT4G23330 AT4G23330
fragaria_vesca	FvH4_5g02510 FvH4_5g02510
malus_domestica	MD06G1084200.v1.1 MD14G1105400.v1.1
prunus_persica	Prupe.5G100600_v2.0.a1 Prupe.5G100600_v2.0.a1 Prupe.5G100600_v2.0.a1 Prupe.5G100600_v2.0.a1
pyrus_communis	pycom06g08050 pycom14g10080
rosa_chinensis	RchiOBHm_Chr7g0197541
rosa_laevigata	RLG00000003926
rosa_multiflora	Rmu_sc0001164.1_g000003 Rmu_sc0007007.1_g000002 Rmu_sc0024523.1_g000002
rosa_roxburghii	Rroxscaffold_3G00258360
rosa_rugosa	Rorug07G0041000 Rorug07G0041100 Rorug07G0041100
rosa_samantha	Rh7AG165800 Rh7CG174200 Rh7DG167200
rosa_wichuraiana	Rw7G014430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	212
AciI	CCGC	6 cut(s)	29, 35, 41, 212, 244, 306
AclWI	GGATC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	364
AcvI	CACGTG	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	312
AflIII	ACRYGT	1 cut(s)	92
AgsI	TTSAA	2 cut(s)	223, 320
AluBI	AGCT	6 cut(s)	26, 48, 151, 176, 219, 421
AluI	AGCT	6 cut(s)	26, 48, 151, 176, 219, 421
Alw21I	GWGCWC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	74
AoxI	GGCC	1 cut(s)	310
ApeKI	GCWGC	3 cut(s)	31, 338, 418
ApoI	RAATTY	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	50
BbrPI	CACGTG	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	50
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	3 cut(s)	18, 325, 430
BccI	CCATC	1 cut(s)	215
BceAI	ACGGC	1 cut(s)	145
BclI	TGATCA	1 cut(s)	280
BfaI	CTAG	3 cut(s)	267, 410, 452
BfmI	CTRYAG	1 cut(s)	416
BisI	GCNGC	5 cut(s)	32, 35, 306, 339, 419
BlsI	GCNGC	5 cut(s)	33, 36, 307, 340, 420
BmiI	GGNNCC	2 cut(s)	133, 473
BmsI	GCATC	3 cut(s)	46, 325, 436
BpiI	GAAGAC	1 cut(s)	15
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
BpmI	CTGGAG	1 cut(s)	480
Bpu10I	CCTNAGC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	451
BsaAI	YACGTR	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	303
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse118I	RCCGGY	2 cut(s)	308, 312
Bse3DI	GCAATG	1 cut(s)	289
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	3 cut(s)	111, 161, 365
BseRI	GAGGAG	2 cut(s)	30, 226
BseX3I	CGGCCG	1 cut(s)	310
BseXI	GCAGC	3 cut(s)	18, 325, 430
Bsh1236I	CGCG	1 cut(s)	212
Bsh1285I	CGRYCG	1 cut(s)	313
BshFI	GGCC	1 cut(s)	312
BsiEI	CGRYCG	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	50
BsiSI	CCGG	2 cut(s)	309, 313
BslFI	GGGAC	2 cut(s)	81, 209
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmFI	GGGAC	2 cut(s)	81, 209
BsnI	GGCC	1 cut(s)	312
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	4 cut(s)	19, 79, 163, 280
BspACI	CCGC	6 cut(s)	29, 35, 41, 212, 244, 306
BspANI	GGCC	1 cut(s)	312
BspCNI	CTCAG	3 cut(s)	112, 160, 366
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	2 cut(s)	133, 473
BspMAI	CTGCAG	1 cut(s)	420
BspPI	GGATC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	289
BsrFI	RCCGGY	2 cut(s)	308, 312
BssAI	RCCGGY	2 cut(s)	308, 312
BssMI	GATC	4 cut(s)	19, 79, 163, 280
BssNI	GRCGYC	1 cut(s)	303
Bst4CI	ACNGT	2 cut(s)	87, 109
Bst6I	CTCTTC	1 cut(s)	236
BstACI	GRCGYC	1 cut(s)	303
BstBAI	YACGTR	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	310, 314
BstDEI	CTNAG	3 cut(s)	120, 147, 374
BstF5I	GGATG	1 cut(s)	37
BstFNI	CGCG	1 cut(s)	212
BstKTI	GATC	4 cut(s)	22, 82, 166, 283
BstMBI	GATC	4 cut(s)	19, 79, 163, 280
BstMCI	CGRYCG	1 cut(s)	313
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstNSI	RCATGY	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	416
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	3 cut(s)	18, 325, 430
BstV2I	GAAGAC	1 cut(s)	15
BstZI	CGGCCG	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	37
Cac8I	GCNNGC	2 cut(s)	310, 314
Cfr10I	RCCGGY	2 cut(s)	308, 312
CseI	GACGC	1 cut(s)	311
CviAII	CATG	3 cut(s)	286, 369, 486
DdeI	CTNAG	3 cut(s)	120, 147, 374
DpnI	GATC	4 cut(s)	21, 81, 165, 282
DpnII	GATC	4 cut(s)	19, 79, 163, 280
EaeI	YGGCCR	1 cut(s)	310
EagI	CGGCCG	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
EciI	GGCGGA	2 cut(s)	30, 233
Ecl136II	GAGCTC	1 cut(s)	48
EclXI	CGGCCG	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	50
Eco52I	CGGCCG	1 cut(s)	310
Eco53kI	GAGCTC	1 cut(s)	48
Eco72I	CACGTG	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	48
EcoT22I	ATGCAT	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	50
FaeI	CATG	3 cut(s)	289, 372, 489
FaiI	YATR	5 cut(s)	117, 287, 362, 370, 487
FaqI	GGGAC	2 cut(s)	81, 209
FatI	CATG	3 cut(s)	285, 368, 485
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	5 cut(s)	32, 35, 306, 339, 419
FokI	GGATG	1 cut(s)	24
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	5 cut(s)	32, 35, 306, 339, 419
FspBI	CTAG	3 cut(s)	267, 410, 452
GluI	GCNGC	5 cut(s)	32, 35, 306, 339, 419
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	1 cut(s)	312
HapII	CCGG	2 cut(s)	309, 313
HgaI	GACGC	1 cut(s)	311
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	3 cut(s)	289, 372, 489
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HinfI	GANTC	6 cut(s)	101, 137, 197, 323, 352, 455
HpaI	GTTAAC	1 cut(s)	466
HpaII	CCGG	2 cut(s)	309, 313
Hpy166II	GTNNAC	2 cut(s)	90, 466
Hpy188I	TCNGA	6 cut(s)	52, 67, 136, 173, 259, 375
Hpy188III	TCNNGA	6 cut(s)	98, 190, 320, 430, 452, 459
Hpy8I	GTNNAC	2 cut(s)	90, 466
Hpy99I	CGWCG	3 cut(s)	131, 191, 305
HpyAV	CCTTC	3 cut(s)	340, 388, 485
HpyCH4III	ACNGT	2 cut(s)	87, 109
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	2 cut(s)	289, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	3 cut(s)	120, 147, 374
HpySE526I	ACGT	1 cut(s)	92
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	3 cut(s)	289, 372, 489
KroI	GCCGGC	2 cut(s)	308, 312
KroNI	GCCGGC	2 cut(s)	310, 314
Ksp22I	TGATCA	1 cut(s)	280
KspAI	GTTAAC	1 cut(s)	466
Kzo9I	GATC	4 cut(s)	19, 79, 163, 280
LmnI	GCTCC	4 cut(s)	31, 53, 137, 477
LpnPI	CCDG	6 cut(s)	170, 322, 326, 428, 444, 454
Lsp1109I	GCAGC	3 cut(s)	18, 325, 430
LweI	GCATC	3 cut(s)	46, 325, 436
MaeI	CTAG	3 cut(s)	267, 410, 452
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	4 cut(s)	21, 81, 165, 282
MboI	GATC	4 cut(s)	19, 79, 163, 280
MboII	GAAGA	4 cut(s)	20, 223, 398, 447
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	1 cut(s)	364
MlyI	GAGTC	3 cut(s)	131, 191, 449
MmeI	TCCRAC	2 cut(s)	90, 159
Mph1103I	ATGCAT	1 cut(s)	291
MroNI	GCCGGC	2 cut(s)	308, 312
MseI	TTAA	2 cut(s)	380, 465
MspA1I	CMGCKG	2 cut(s)	31, 151
MspI	CCGG	2 cut(s)	309, 313
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	40
NaeI	GCCGGC	2 cut(s)	310, 314
NdeII	GATC	4 cut(s)	19, 79, 163, 280
NgoMIV	GCCGGC	2 cut(s)	308, 312
NlaIII	CATG	3 cut(s)	289, 372, 489
NlaIV	GGNNCC	2 cut(s)	133, 473
NmeAIII	GCCGAG	1 cut(s)	69
NsiI	ATGCAT	1 cut(s)	291
NspI	RCATGY	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 186, 255
PdiI	GCCGGC	2 cut(s)	310, 314
PfeI	GAWTC	3 cut(s)	101, 323, 352
PkrI	GCNGC	5 cut(s)	33, 36, 307, 340, 420
PleI	GAGTC	3 cut(s)	131, 191, 449
PmaCI	CACGTG	1 cut(s)	93
PmlI	CACGTG	1 cut(s)	93
PpsI	GAGTC	3 cut(s)	131, 191, 449
Ppu21I	YACGTR	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	50
PspCI	CACGTG	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	133, 473
PstI	CTGCAG	1 cut(s)	420
PvuII	CAGCTG	1 cut(s)	151
SacI	GAGCTC	1 cut(s)	50
SaqAI	TTAA	2 cut(s)	380, 465
SatI	GCNGC	5 cut(s)	32, 35, 306, 339, 419
Sau3AI	GATC	4 cut(s)	19, 79, 163, 280
SchI	GAGTC	3 cut(s)	131, 191, 449
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	9 cut(s)	28, 50, 78, 95, 148, 153, 178, 221, 423
SfaNI	GCATC	3 cut(s)	46, 325, 436
SfcI	CTRYAG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	430
SmoI	CTYRAG	1 cut(s)	430
Sse9I	AATT	1 cut(s)	364
SsiI	CCGC	6 cut(s)	29, 35, 41, 212, 244, 306
SspMI	CTAG	3 cut(s)	267, 410, 452
SstI	GAGCTC	1 cut(s)	50
TaaI	ACNGT	2 cut(s)	87, 109
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	3 cut(s)	78, 180, 189
TaqII	GACCGA	1 cut(s)	176
TasI	AATT	1 cut(s)	364
TauI	GCSGC	2 cut(s)	37, 308
TfiI	GAWTC	3 cut(s)	101, 323, 352
Tru1I	TTAA	2 cut(s)	380, 465
Tru9I	TTAA	2 cut(s)	380, 465
TseI	GCWGC	3 cut(s)	31, 338, 418
TspDTI	ATGAA	3 cut(s)	357, 399, 407
TspGWI	ACGGA	2 cut(s)	27, 316
XapI	RAATTY	1 cut(s)	364
XbaI	TCTAGA	1 cut(s)	451
XceI	RCATGY	1 cut(s)	289
XspI	CTAG	3 cut(s)	267, 410, 452
Zsp2I	ATGCAT	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.