Rw7G014430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0006371
Physical Location & Seq
Reverse (-)
14135164 .. 14136682
1519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G014430.1

Sequence Viewer

Length: 489 bp
ATGGAGGAAGACGGAGGAGATCAAGCTCCGCTGCCGCATCCGCCGAGCTCCGAAACCCCAATCTCCGACCCAAACCTCGATCCACCGTCCACGTGTCCCGATTCCACAGTCGCTCATACTCAGGACGACGGCTCCGACTCAAAACCTCAGCTGAACCAGGCCGATCTATTCAGAGCTGTCGAAGTCGTTGAGAGGGACTCCCTCGCCATCGCGGAGAGCTTCACCTCTCTCTTCTCCTCCCTCCGCCTCGCCCTCTCCGAAGTCACTAGCAACTCGGTTGATCACATGCATTGCTTTGGCGACGCCGCCGGCCGGCTTCAAGAATCCGTGCTTGATGCTGCTACGAAGGGGAATCGCTACATAAATTCATGTCTGAGATTAAATGAAGAAATGAAGGGTGTTGATAGTCTAGCCCTGCAGCTAAAACTCTTGAGAAGAAATGTTGATGCTCTAGACTCCGGAGTTAACAGGCTCCTTCGCCTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BORCS6

Protein Analysis

162

Amino Acids

17.54

Weight (kDa)

4.57

Isoelectric Point (pI)

51.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BORCS6 PF10157 59 - 152 5.5e-20 BLOC-1-related complex sub-unit 6 C-terminal helix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 212
AccIII TCCGGA 1 cut(s) 458
AciI CCGC 6 cut(s) 29, 35, 41, 212, 244, 306
AclWI GGATC 1 cut(s) 74
AcoI YGGCCR 1 cut(s) 310
AcsI RAATTY 1 cut(s) 364
AcvI CACGTG 1 cut(s) 93
AcyI GRCGYC 1 cut(s) 303
AfiI CCNNNNNNNGG 1 cut(s) 312
AflIII ACRYGT 1 cut(s) 92
AgsI TTSAA 1 cut(s) 320
AjnI CCWGG 1 cut(s) 156
AluBI AGCT 6 cut(s) 26, 48, 151, 176, 219, 421
AluI AGCT 6 cut(s) 26, 48, 151, 176, 219, 421
Alw21I GWGCWC 1 cut(s) 50
AlwI GGATC 1 cut(s) 74
Aor13HI TCCGGA 1 cut(s) 458
AoxI GGCC 2 cut(s) 159, 310
ApeKI GCWGC 3 cut(s) 31, 338, 418
ApoI RAATTY 1 cut(s) 364
AsuHPI GGTGA 1 cut(s) 214
BanII GRGCYC 1 cut(s) 50
BbrPI CACGTG 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 50
BbvCI CCTCAGC 1 cut(s) 147
BbvI GCAGC 3 cut(s) 18, 325, 430
BccI CCATC 1 cut(s) 215
BceAI ACGGC 1 cut(s) 145
BciT130I CCWGG 1 cut(s) 158
BclI TGATCA 1 cut(s) 280
BfaI CTAG 3 cut(s) 267, 410, 452
BfmI CTRYAG 1 cut(s) 416
BisI GCNGC 5 cut(s) 32, 35, 306, 339, 419
BlsI GCNGC 5 cut(s) 33, 36, 307, 340, 420
Bme1390I CCNGG 1 cut(s) 158
BmiI GGNNCC 2 cut(s) 133, 473
BmrFI CCNGG 1 cut(s) 158
BmsI GCATC 3 cut(s) 46, 325, 436
BpiI GAAGAC 1 cut(s) 15
BplI GAGNNNNNCTC 2 cut(s) 182, 214
Bpu10I CCTNAGC 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 451
BsaAI YACGTR 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 303
BsaWI WCCGGW 1 cut(s) 458
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 1 cut(s) 312
Bse118I RCCGGY 2 cut(s) 308, 312
Bse3DI GCAATG 1 cut(s) 289
BseAI TCCGGA 1 cut(s) 458
BseBI CCWGG 1 cut(s) 158
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 1 cut(s) 312
BseMI GCAATG 1 cut(s) 289
BseMII CTCAG 3 cut(s) 134, 161, 365
BseRI GAGGAG 2 cut(s) 30, 226
BseX3I CGGCCG 1 cut(s) 310
BseXI GCAGC 3 cut(s) 18, 325, 430
Bsh1236I CGCG 1 cut(s) 212
Bsh1285I CGRYCG 1 cut(s) 313
BshFI GGCC 2 cut(s) 161, 312
BsiEI CGRYCG 1 cut(s) 313
BsiHKAI GWGCWC 1 cut(s) 50
BsiSI CCGG 3 cut(s) 309, 313, 459
BslFI GGGAC 2 cut(s) 81, 209
BslI CCNNNNNNNGG 1 cut(s) 312
BsmFI GGGAC 2 cut(s) 81, 209
BsnI GGCC 2 cut(s) 161, 312
Bsp1286I GDGCHC 1 cut(s) 50
Bsp13I TCCGGA 1 cut(s) 458
Bsp143I GATC 4 cut(s) 19, 79, 163, 280
BspACI CCGC 6 cut(s) 29, 35, 41, 212, 244, 306
BspANI GGCC 2 cut(s) 161, 312
BspCNI CTCAG 3 cut(s) 133, 160, 366
BspEI TCCGGA 1 cut(s) 458
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 2 cut(s) 133, 473
BspMAI CTGCAG 1 cut(s) 420
BspPI GGATC 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 289
BsrFI RCCGGY 2 cut(s) 308, 312
BssAI RCCGGY 2 cut(s) 308, 312
BssMI GATC 4 cut(s) 19, 79, 163, 280
BssNI GRCGYC 1 cut(s) 303
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 2 cut(s) 87, 109
Bst6I CTCTTC 1 cut(s) 236
BstACI GRCGYC 1 cut(s) 303
BstBAI YACGTR 1 cut(s) 93
BstC8I GCNNGC 2 cut(s) 310, 314
BstDEI CTNAG 3 cut(s) 120, 147, 374
BstF5I GGATG 1 cut(s) 37
BstFNI CGCG 1 cut(s) 212
BstKTI GATC 4 cut(s) 22, 82, 166, 283
BstMBI GATC 4 cut(s) 19, 79, 163, 280
BstMCI CGRYCG 1 cut(s) 313
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNI CCWGG 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 156
BstSFI CTRYAG 1 cut(s) 416
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 3 cut(s) 18, 325, 430
BstV2I GAAGAC 1 cut(s) 15
BstZI CGGCCG 1 cut(s) 310
BsuRI GGCC 2 cut(s) 161, 312
BtgZI GCGATG 1 cut(s) 193
BtsCI GGATG 1 cut(s) 37
Cac8I GCNNGC 2 cut(s) 310, 314
Cfr10I RCCGGY 2 cut(s) 308, 312
CseI GACGC 1 cut(s) 311
CviAII CATG 3 cut(s) 286, 369, 486
DdeI CTNAG 3 cut(s) 120, 147, 374
DpnI GATC 4 cut(s) 21, 81, 165, 282
DpnII GATC 4 cut(s) 19, 79, 163, 280
EaeI YGGCCR 1 cut(s) 310
EagI CGGCCG 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
EciI GGCGGA 2 cut(s) 30, 233
Ecl136II GAGCTC 1 cut(s) 48
EclXI CGGCCG 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 50
Eco52I CGGCCG 1 cut(s) 310
Eco53kI GAGCTC 1 cut(s) 48
Eco72I CACGTG 1 cut(s) 93
EcoICRI GAGCTC 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 291
EcoT38I GRGCYC 1 cut(s) 50
FaeI CATG 3 cut(s) 289, 372, 489
FaiI YATR 5 cut(s) 117, 287, 362, 370, 487
FaqI GGGAC 2 cut(s) 81, 209
FatI CATG 3 cut(s) 285, 368, 485
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 5 cut(s) 32, 35, 306, 339, 419
FokI GGATG 1 cut(s) 24
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 5 cut(s) 32, 35, 306, 339, 419
FspBI CTAG 3 cut(s) 267, 410, 452
GluI GCNGC 5 cut(s) 32, 35, 306, 339, 419
HaeIII GGCC 2 cut(s) 161, 312
HapII CCGG 3 cut(s) 309, 313, 459
HgaI GACGC 1 cut(s) 311
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 3 cut(s) 289, 372, 489
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HinfI GANTC 6 cut(s) 101, 137, 197, 323, 352, 455
HpaI GTTAAC 1 cut(s) 466
HpaII CCGG 3 cut(s) 309, 313, 459
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 90, 466
Hpy188I TCNGA 6 cut(s) 52, 67, 136, 173, 259, 375
Hpy188III TCNNGA 6 cut(s) 98, 122, 320, 430, 452, 459
Hpy8I GTNNAC 2 cut(s) 90, 466
Hpy99I CGWCG 2 cut(s) 131, 305
HpyAV CCTTC 3 cut(s) 340, 388, 485
HpyCH4III ACNGT 2 cut(s) 87, 109
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 2 cut(s) 289, 418
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 3 cut(s) 120, 147, 374
HpySE526I ACGT 1 cut(s) 92
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 3 cut(s) 289, 372, 489
Kpn2I TCCGGA 1 cut(s) 458
KroI GCCGGC 2 cut(s) 308, 312
KroNI GCCGGC 2 cut(s) 310, 314
Ksp22I TGATCA 1 cut(s) 280
KspAI GTTAAC 1 cut(s) 466
Kzo9I GATC 4 cut(s) 19, 79, 163, 280
LmnI GCTCC 4 cut(s) 31, 53, 137, 477
LpnPI CCDG 8 cut(s) 107, 143, 170, 322, 326, 428, 454, 472
Lsp1109I GCAGC 3 cut(s) 18, 325, 430
LweI GCATC 3 cut(s) 46, 325, 436
MaeI CTAG 3 cut(s) 267, 410, 452
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 1 cut(s) 262
MalI GATC 4 cut(s) 21, 81, 165, 282
MboI GATC 4 cut(s) 19, 79, 163, 280
MboII GAAGA 4 cut(s) 20, 223, 398, 447
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 1 cut(s) 364
MlyI GAGTC 3 cut(s) 131, 191, 449
MmeI TCCRAC 2 cut(s) 90, 159
Mph1103I ATGCAT 1 cut(s) 291
MroI TCCGGA 1 cut(s) 458
MroNI GCCGGC 2 cut(s) 308, 312
MseI TTAA 2 cut(s) 380, 465
MspA1I CMGCKG 2 cut(s) 31, 151
MspI CCGG 3 cut(s) 309, 313, 459
MspR9I CCNGG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 158
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 40
NaeI GCCGGC 2 cut(s) 310, 314
NdeII GATC 4 cut(s) 19, 79, 163, 280
NgoMIV GCCGGC 2 cut(s) 308, 312
NlaIII CATG 3 cut(s) 289, 372, 489
NlaIV GGNNCC 2 cut(s) 133, 473
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 262
NsiI ATGCAT 1 cut(s) 291
NspI RCATGY 1 cut(s) 289
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 255
PdiI GCCGGC 2 cut(s) 310, 314
PfeI GAWTC 3 cut(s) 101, 323, 352
PkrI GCNGC 5 cut(s) 33, 36, 307, 340, 420
PleI GAGTC 3 cut(s) 131, 191, 449
PmaCI CACGTG 1 cut(s) 93
PmlI CACGTG 1 cut(s) 93
PpsI GAGTC 3 cut(s) 131, 191, 449
Ppu21I YACGTR 1 cut(s) 93
Psp124BI GAGCTC 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 156
PspCI CACGTG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 2 cut(s) 133, 473
PstI CTGCAG 1 cut(s) 420
PvuII CAGCTG 1 cut(s) 151
SacI GAGCTC 1 cut(s) 50
SaqAI TTAA 2 cut(s) 380, 465
SatI GCNGC 5 cut(s) 32, 35, 306, 339, 419
Sau3AI GATC 4 cut(s) 19, 79, 163, 280
SchI GAGTC 3 cut(s) 131, 191, 449
ScrFI CCNGG 1 cut(s) 158
SduI GDGCHC 1 cut(s) 50
SfaNI GCATC 3 cut(s) 46, 325, 436
SfcI CTRYAG 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 430
SmoI CTYRAG 1 cut(s) 430
Sse9I AATT 1 cut(s) 364
SsiI CCGC 6 cut(s) 29, 35, 41, 212, 244, 306
SspMI CTAG 3 cut(s) 267, 410, 452
SstI GAGCTC 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 156
TaaI ACNGT 2 cut(s) 87, 109
TaiI ACGT 1 cut(s) 95
TaqI TCGA 2 cut(s) 78, 180
TasI AATT 1 cut(s) 364
TauI GCSGC 2 cut(s) 37, 308
TfiI GAWTC 3 cut(s) 101, 323, 352
Tru1I TTAA 2 cut(s) 380, 465
Tru9I TTAA 2 cut(s) 380, 465
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 3 cut(s) 31, 338, 418
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 3 cut(s) 357, 399, 407
TspGWI ACGGA 2 cut(s) 27, 316
XapI RAATTY 1 cut(s) 364
XbaI TCTAGA 1 cut(s) 451
XceI RCATGY 1 cut(s) 289
XspI CTAG 3 cut(s) 267, 410, 452
Zsp2I ATGCAT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.