FvH4_5g06600

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013668
Physical Location & Seq
Forward (+)
3890873 .. 3892688
1816 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06600.t1

Sequence Viewer

Length: 1515 bp
ATGGATCTTCTTCAGTTTCTTAACAGACCATCTTTGCTTCTGGCATTCAGTTTCCTCATAGCGTTGCTTACATTCCTCTTCAAGGATAGTTCAAGAAAAAGAAAACTCAAACTCCCACCAGGCCCTCCAAAGCTACCTGTCATTGGCAACCTTCACCTGCTAGGAAACCAGCCTCACCTATCTCTCCGGTCCTTAGCAGAGAAATATGGTCCAATAATTCACTTGCAACTTGGTGAGATCCCAACTGTGGTGGTTTCATCAGCTAGAGTTGCCAAGGAAGTACTAAAAACCCATGATCTTGCACTATCAAGCCGTCCACAAATCTTTTCAGCCAAACATCTCTTCTATAATTGCACTGATGTTGTCTTCTCCCCTTATGGTGCTTATTGGAGACACATACGTAAGATTTGCATACTTGAGCTGTTAAGTGCCAAACGAGTGCAGTCATATAGCCATGCCAGAGAAGAAGAAGTTGCTCGTCTGGCTCATCGGGTTGCAGAGTGCTATCCCGGCACCACTAATCTCAGCAAGTTGCTTGGACTATATGCAAATGACATTCTCTGCCGCGTAGCATTTGGAAGAGATTTCTCAGGTGGTGGAGAGTATGATCAGCATGGTTTTCAAAAGATGCTCGAGGAATACCAGGAATTGCTTGGCGGATTTTCTATTGGAGATTTCTTCCCTTCCATGGAGTTCCTCCACACCTTAACAGGAATGAAATCAAGACTTCAAGAGACATTCCGTCGATTTGATAAACTCTTTGACCAGATTTTGGCTGAACATCTAAATCCCAAAAGACAAACAGAGGAGCACAAGGACCTTGTGGATGTTTTACTGGATGTACAAAAGACAGAGTCTGCTGATATGCCTCTAACTATGGATAATGTCAAGGCTATTATCTTGGATATGTTTGCTGCAGGAACTGACACAACCTTCATCACCCTTGATTGGGGAATGACAGAGCTTTTAATGAATCCCAAAGTCCTCAAAAAAGCACAAGCTGAAGTACGAGCTGTTGTGGGGGAAAGAAGAGTTGTGTTAGAGGGTGATCTTCATCAGCTGGACTATTTGAAAGCTGTCATTAAAGAGATATTCCGGTTGCATCCACCTGCACCTGTACTAGTCCCTAGAGAATCCATGGAAGATGTAACCATTGACGGATACGACATTCTAGCCAAAACAAGAATTTTTGTCAATGCCTGGGCAATAGGAAGACACCCAGAATCTTGGGAAAACCCAGAAAAGTTTGAGCCAGAAAGATTTATGGGTAGCACTATTGATTTCAAGGGGCAGGATTTTGAGCTTTTACCTTTTGGGGCTGGTAGAAGGGGTTGTCCGGCTATTACATTCAGCACAGCCAGCATTGAGCTTGCTCTAGCACAACTTCTGCATAGCTTTGATTGGGAGCTTCCTGCTGGTACTGCAGCTGATGATTTGGACATGACAGAAGATTTTGGCATAACAATGCACAGGATAGCCAATCTGATTGTTGTTGCCAGACCACGGTTTTCCTGA

Protein Analysis

505

Amino Acids

57.05

Weight (kDa)

6.3

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 39 - 489 1.2e-102 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 165, 1117
Acc36I ACCTGC 2 cut(s) 165, 1117
AccB1I GGYRCC 1 cut(s) 512
AccB7I CCANNNNNTGG 1 cut(s) 772
AccII CGCG 1 cut(s) 567
AciI CCGC 2 cut(s) 565, 657
AclWI GGATC 2 cut(s) 12, 232
AcsI RAATTY 1 cut(s) 1185
AcuI CTGAAG 1 cut(s) 1023
AfaI GTAC 5 cut(s) 282, 843, 1008, 1119, 1420
AfiI CCNNNNNNNGG 8 cut(s) 82, 143, 247, 688, 772, 948, 949, 1503
AgsI TTSAA 6 cut(s) 82, 93, 623, 731, 1072, 1285
AhdI GACNNNNNGTC 1 cut(s) 741
AhlI ACTAGT 1 cut(s) 1120
AjnI CCWGG 3 cut(s) 118, 642, 1199
AjuI GAANNNNNNNTTGG 2 cut(s) 326, 358
Alw21I GWGCWC 1 cut(s) 813
Alw26I GTCTC 2 cut(s) 385, 728
AlwI GGATC 2 cut(s) 12, 232
AlwNI CAGNNNCTG 2 cut(s) 857, 923
Ama87I CYCGRG 1 cut(s) 632
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 2 cut(s) 914, 1424
ApoI RAATTY 1 cut(s) 1185
AspS9I GGNCC 4 cut(s) 122, 189, 209, 817
AsuC2I CCSGG 1 cut(s) 510
AsuHPI GGTGA 5 cut(s) 146, 167, 245, 931, 1058
AvaI CYCGRG 1 cut(s) 632
AvaII GGWCC 3 cut(s) 189, 209, 817
BanI GGYRCC 1 cut(s) 512
BbsI GAAGAC 2 cut(s) 358, 1219
Bbv12I GWGCWC 1 cut(s) 813
BbvI GCAGC 2 cut(s) 901, 1436
BccI CCATC 1 cut(s) 37
BceAI ACGGC 1 cut(s) 297
BciT130I CCWGG 3 cut(s) 120, 644, 1201
BciVI GTATCC 1 cut(s) 1154
BclI TGATCA 1 cut(s) 607
BcnI CCSGG 1 cut(s) 510
BcoDI GTCTC 2 cut(s) 385, 728
BcuI ACTAGT 1 cut(s) 1120
BfaI CTAG 6 cut(s) 161, 264, 1121, 1128, 1172, 1376
BfmI CTRYAG 2 cut(s) 915, 1422
BfuAI ACCTGC 2 cut(s) 165, 1117
BfuI GTATCC 1 cut(s) 1154
BisI GCNGC 3 cut(s) 565, 915, 1425
BlsI GCNGC 3 cut(s) 566, 916, 1426
BmcAI AGTACT 1 cut(s) 282
Bme1390I CCNGG 4 cut(s) 120, 510, 644, 1201
Bme18I GGWCC 3 cut(s) 189, 209, 817
BmeRI GACNNNNNGTC 1 cut(s) 741
BmeT110I CYCGRG 1 cut(s) 632
BmgT120I GGNCC 4 cut(s) 122, 189, 209, 817
BmiI GGNNCC 1 cut(s) 514
BmrFI CCNGG 4 cut(s) 120, 510, 644, 1201
BmsI GCATC 2 cut(s) 618, 1111
BpiI GAAGAC 2 cut(s) 358, 1219
Bpu10I CCTNAGC 1 cut(s) 193
BpuEI CTTGAG 1 cut(s) 437
BpuMI CCSGG 1 cut(s) 510
BsaAI YACGTR 1 cut(s) 401
BsaBI GATNNNNATC 1 cut(s) 1053
BsaJI CCNNGG 5 cut(s) 273, 687, 1137, 1200, 1502
BsaWI WCCGGW 2 cut(s) 186, 1095
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bsc4I CCNNNNNNNGG 8 cut(s) 82, 143, 247, 688, 772, 948, 949, 1503
Bse1I ACTGG 1 cut(s) 840
Bse8I GATNNNNATC 1 cut(s) 1053
BseBI CCWGG 3 cut(s) 120, 644, 1201
BseDI CCNNGG 5 cut(s) 273, 687, 1137, 1200, 1502
BseGI GGATG 3 cut(s) 832, 844, 1102
BseJI GATNNNNATC 1 cut(s) 1053
BseLI CCNNNNNNNGG 8 cut(s) 82, 143, 247, 688, 772, 948, 949, 1503
BseMII CTCAG 2 cut(s) 538, 603
BseNI ACTGG 1 cut(s) 840
BseRI GAGGAG 1 cut(s) 821
BseXI GCAGC 2 cut(s) 901, 1436
BsgI GTGCAG 2 cut(s) 461, 1095
Bsh1236I CGCG 1 cut(s) 567
BshFI GGCC 1 cut(s) 123
BshNI GGYRCC 1 cut(s) 512
BsiHKAI GWGCWC 1 cut(s) 813
BsiHKCI CYCGRG 1 cut(s) 632
BsiSI CCGG 4 cut(s) 187, 510, 1096, 1337
BslFI GGGAC 1 cut(s) 1109
BslI CCNNNNNNNGG 8 cut(s) 82, 143, 247, 688, 772, 948, 949, 1503
BsmAI GTCTC 2 cut(s) 385, 728
BsmFI GGGAC 1 cut(s) 1109
BsmI GAATGC 1 cut(s) 44
BsnI GGCC 1 cut(s) 123
BsoBI CYCGRG 1 cut(s) 632
Bsp1286I GDGCHC 1 cut(s) 813
Bsp1407I TGTACA 1 cut(s) 841
Bsp143I GATC 5 cut(s) 4, 237, 295, 607, 1048
Bsp19I CCATGG 2 cut(s) 687, 1137
BspACI CCGC 2 cut(s) 565, 657
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 2 cut(s) 537, 602
BspFNI CGCG 1 cut(s) 567
BspLI GGNNCC 1 cut(s) 514
BspMAI CTGCAG 2 cut(s) 919, 1426
BspMI ACCTGC 2 cut(s) 165, 1117
BspPI GGATC 2 cut(s) 12, 232
BspT107I GGYRCC 1 cut(s) 512
BsrGI TGTACA 1 cut(s) 841
BsrI ACTGG 1 cut(s) 840
BssECI CCNNGG 5 cut(s) 273, 687, 1137, 1200, 1502
BssMI GATC 5 cut(s) 4, 237, 295, 607, 1048
BssT1I CCWWGG 3 cut(s) 273, 687, 1137
Bst2UI CCWGG 3 cut(s) 120, 644, 1201
Bst4CI ACNGT 2 cut(s) 247, 1506
Bst6I CTCTTC 4 cut(s) 83, 347, 574, 1024
BstAUI TGTACA 1 cut(s) 841
BstBAI YACGTR 1 cut(s) 401
BstC8I GCNNGC 2 cut(s) 1360, 1371
BstDEI CTNAG 3 cut(s) 193, 524, 589
BstDSI CCRYGG 3 cut(s) 687, 1137, 1502
BstENI CCTNNNNNAGG 1 cut(s) 80
BstF5I GGATG 3 cut(s) 832, 844, 1102
BstFNI CGCG 1 cut(s) 567
BstKTI GATC 5 cut(s) 7, 240, 298, 610, 1051
BstMAI GTCTC 2 cut(s) 385, 728
BstMBI GATC 5 cut(s) 4, 237, 295, 607, 1048
BstMWI GCNNNNNNNGC 5 cut(s) 269, 482, 510, 1359, 1421
BstNI CCWGG 3 cut(s) 120, 644, 1201
BstSCI CCNGG 4 cut(s) 118, 508, 642, 1199
BstSFI CTRYAG 2 cut(s) 915, 1422
BstSNI TACGTA 1 cut(s) 401
BstUI CGCG 1 cut(s) 567
BstV1I GCAGC 2 cut(s) 901, 1436
BstV2I GAAGAC 2 cut(s) 358, 1219
BstX2I RGATCY 2 cut(s) 4, 237
BstXI CCANNNNNNTGG 1 cut(s) 1227
BstYI RGATCY 2 cut(s) 4, 237
BsuI GTATCC 1 cut(s) 1154
BsuRI GGCC 1 cut(s) 123
BtgI CCRYGG 3 cut(s) 687, 1137, 1502
BtsCI GGATG 3 cut(s) 832, 844, 1102
BtsIMutI CAGTG 1 cut(s) 354
BveI ACCTGC 2 cut(s) 165, 1117
Cac8I GCNNGC 2 cut(s) 1360, 1371
CaiI CAGNNNCTG 2 cut(s) 857, 923
Cfr13I GGNCC 4 cut(s) 122, 189, 209, 817
Csp6I GTAC 5 cut(s) 281, 842, 1007, 1118, 1419
CspCI CAANNNNNGTGG 2 cut(s) 231, 266
CviAII CATG 6 cut(s) 293, 455, 614, 688, 1138, 1441
CviQI GTAC 5 cut(s) 281, 842, 1007, 1118, 1419
DdeI CTNAG 3 cut(s) 193, 524, 589
DpnI GATC 5 cut(s) 6, 239, 297, 609, 1050
DpnII GATC 5 cut(s) 4, 237, 295, 607, 1048
DriI GACNNNNNGTC 1 cut(s) 741
Eam1104I CTCTTC 4 cut(s) 83, 347, 574, 1024
Eam1105I GACNNNNNGTC 1 cut(s) 741
EarI CTCTTC 4 cut(s) 83, 347, 574, 1024
EciI GGCGGA 1 cut(s) 672
Eco105I TACGTA 1 cut(s) 401
Eco130I CCWWGG 3 cut(s) 273, 687, 1137
Eco47I GGWCC 3 cut(s) 189, 209, 817
Eco57I CTGAAG 1 cut(s) 1023
Eco88I CYCGRG 1 cut(s) 632
EcoNI CCTNNNNNAGG 1 cut(s) 80
EcoO109I RGGNCCY 2 cut(s) 122, 817
EcoRII CCWGG 3 cut(s) 118, 642, 1199
EcoT14I CCWWGG 3 cut(s) 273, 687, 1137
ErhI CCWWGG 3 cut(s) 273, 687, 1137
FaeI CATG 6 cut(s) 296, 458, 617, 691, 1141, 1444
FaqI GGGAC 1 cut(s) 1109
FatI CATG 6 cut(s) 292, 454, 613, 687, 1137, 1440
FbaI TGATCA 1 cut(s) 607
Fnu4HI GCNGC 3 cut(s) 565, 915, 1425
FokI GGATG 3 cut(s) 839, 851, 1089
Fsp4HI GCNGC 3 cut(s) 565, 915, 1425
FspBI CTAG 6 cut(s) 161, 264, 1121, 1128, 1172, 1376
GluI GCNGC 3 cut(s) 565, 915, 1425
HaeIII GGCC 1 cut(s) 123
HapII CCGG 4 cut(s) 187, 510, 1096, 1337
Hin1II CATG 6 cut(s) 296, 458, 617, 691, 1141, 1444
HinfI GANTC 4 cut(s) 854, 973, 1133, 1223
HpaII CCGG 4 cut(s) 187, 510, 1096, 1337
HphI GGTGA 5 cut(s) 146, 167, 245, 931, 1058
Hpy166II GTNNAC 1 cut(s) 317
Hpy188I TCNGA 1 cut(s) 1485
Hpy188III TCNNGA 4 cut(s) 93, 723, 731, 1512
Hpy8I GTNNAC 1 cut(s) 317
Hpy99I CGWCG 1 cut(s) 747
HpyAV CCTTC 4 cut(s) 161, 693, 943, 1320
HpyCH4III ACNGT 2 cut(s) 247, 1506
HpyCH4IV ACGT 1 cut(s) 400
HpyF10VI GCNNNNNNNGC 5 cut(s) 269, 482, 510, 1359, 1421
HpyF3I CTNAG 3 cut(s) 193, 524, 589
HpySE526I ACGT 1 cut(s) 400
Hsp92II CATG 6 cut(s) 296, 458, 617, 691, 1141, 1444
Ksp22I TGATCA 1 cut(s) 607
Kzo9I GATC 5 cut(s) 4, 237, 295, 607, 1048
LmnI GCTCC 2 cut(s) 808, 1405
Lsp1109I GCAGC 2 cut(s) 901, 1436
LweI GCATC 2 cut(s) 618, 1111
MaeI CTAG 6 cut(s) 161, 264, 1121, 1128, 1172, 1376
MaeII ACGT 1 cut(s) 400
MaeIII GTNAC 1 cut(s) 1147
MalI GATC 5 cut(s) 6, 239, 297, 609, 1050
MboI GATC 5 cut(s) 4, 237, 295, 607, 1048
MflI RGATCY 2 cut(s) 4, 237
MhlI GDGCHC 1 cut(s) 813
MluCI AATT 4 cut(s) 216, 349, 647, 1185
MlyI GAGTC 1 cut(s) 863
MseI TTAA 5 cut(s) 21, 425, 707, 968, 1083
MslI CAYNNNNRTG 1 cut(s) 1463
MspA1I CMGCKG 2 cut(s) 1060, 1427
MspI CCGG 4 cut(s) 187, 510, 1096, 1337
MspR9I CCNGG 4 cut(s) 120, 510, 644, 1201
Mva1269I GAATGC 1 cut(s) 44
MvaI CCWGG 3 cut(s) 120, 644, 1201
MvnI CGCG 1 cut(s) 567
MwoI GCNNNNNNNGC 5 cut(s) 269, 482, 510, 1359, 1421
NciI CCSGG 1 cut(s) 510
NcoI CCATGG 2 cut(s) 687, 1137
NdeII GATC 5 cut(s) 4, 237, 295, 607, 1048
NlaIII CATG 6 cut(s) 296, 458, 617, 691, 1141, 1444
NlaIV GGNNCC 1 cut(s) 514
PaeR7I CTCGAG 1 cut(s) 632
PaqCI CACCTGC 2 cut(s) 165, 1117
PctI GAATGC 1 cut(s) 44
PfeI GAWTC 3 cut(s) 973, 1133, 1223
PflFI GACNNNGTC 1 cut(s) 853
PflMI CCANNNNNTGG 1 cut(s) 772
PkrI GCNGC 3 cut(s) 566, 916, 1426
PleI GAGTC 1 cut(s) 862
PpsI GAGTC 1 cut(s) 862
Ppu21I YACGTR 1 cut(s) 401
PpuMI RGGWCCY 1 cut(s) 817
Psp5II RGGWCCY 1 cut(s) 817
Psp6I CCWGG 3 cut(s) 118, 642, 1199
PspGI CCWGG 3 cut(s) 118, 642, 1199
PspN4I GGNNCC 1 cut(s) 514
PspPI GGNCC 4 cut(s) 122, 189, 209, 817
PspPPI RGGWCCY 1 cut(s) 817
PspXI VCTCGAGB 1 cut(s) 632
PstI CTGCAG 2 cut(s) 919, 1426
PstNI CAGNNNCTG 2 cut(s) 857, 923
PsuI RGATCY 2 cut(s) 4, 237
PsyI GACNNNGTC 1 cut(s) 853
PvuII CAGCTG 2 cut(s) 1060, 1427
RsaI GTAC 5 cut(s) 282, 843, 1008, 1119, 1420
RsaNI GTAC 5 cut(s) 281, 842, 1007, 1118, 1419
RseI CAYNNNNRTG 1 cut(s) 1463
SaqAI TTAA 5 cut(s) 21, 425, 707, 968, 1083
SatI GCNGC 3 cut(s) 565, 915, 1425
Sau3AI GATC 5 cut(s) 4, 237, 295, 607, 1048
Sau96I GGNCC 4 cut(s) 122, 189, 209, 817
ScaI AGTACT 1 cut(s) 282
SchI GAGTC 1 cut(s) 863
ScrFI CCNGG 4 cut(s) 120, 510, 644, 1201
SduI GDGCHC 1 cut(s) 813
SfaNI GCATC 2 cut(s) 618, 1111
SfcI CTRYAG 2 cut(s) 915, 1422
Sfr274I CTCGAG 1 cut(s) 632
SinI GGWCC 3 cut(s) 189, 209, 817
SlaI CTCGAG 1 cut(s) 632
SmiMI CAYNNNNRTG 1 cut(s) 1463
SmlI CTYRAG 2 cut(s) 416, 632
SmoI CTYRAG 2 cut(s) 416, 632
SnaBI TACGTA 1 cut(s) 401
SpeI ACTAGT 1 cut(s) 1120
Sse9I AATT 4 cut(s) 216, 349, 647, 1185
SsiI CCGC 2 cut(s) 565, 657
SspMI CTAG 6 cut(s) 161, 264, 1121, 1128, 1172, 1376
StyD4I CCNGG 4 cut(s) 118, 508, 642, 1199
StyI CCWWGG 3 cut(s) 273, 687, 1137
TaaI ACNGT 2 cut(s) 247, 1506
TaiI ACGT 1 cut(s) 403
TaqI TCGA 2 cut(s) 633, 745
TasI AATT 4 cut(s) 216, 349, 647, 1185
TatI WGTACW 3 cut(s) 280, 841, 1117
TauI GCSGC 1 cut(s) 567
TfiI GAWTC 3 cut(s) 973, 1133, 1223
Tru1I TTAA 5 cut(s) 21, 425, 707, 968, 1083
Tru9I TTAA 5 cut(s) 21, 425, 707, 968, 1083
TscAI CASTG 1 cut(s) 361
TseI GCWGC 2 cut(s) 914, 1424
TspDTI ATGAA 5 cut(s) 246, 731, 925, 986, 1043
TspGWI ACGGA 2 cut(s) 731, 1173
TspRI CASTG 1 cut(s) 361
Tth111I GACNNNGTC 1 cut(s) 853
Van91I CCANNNNNTGG 1 cut(s) 772
VpaK11BI GGWCC 3 cut(s) 189, 209, 817
XagI CCTNNNNNAGG 1 cut(s) 80
XapI RAATTY 1 cut(s) 1185
XcmI CCANNNNNNNNNTGG 1 cut(s) 650
XhoI CTCGAG 1 cut(s) 632
XspI CTAG 6 cut(s) 161, 264, 1121, 1128, 1172, 1376
ZrmI AGTACT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.