Rh7AG123600

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013668
Physical Location & Seq
Reverse (-)
9705490 .. 9705879
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG123600.1

Sequence Viewer

Length: 390 bp
ATGCTTGAGCTACTAAGTGCCAAAAGAGTGCAATCATTTAGTCATGTAAGAGTAGAAGAAGTTGCTCGTCTGGCTCATCGGGTTGCAGAGTCCTATCCTGGCACCACTAATCTGAGCAAGTTGGTTGGACTATATGCAAATGATATTCTCTGCCGCGTAGCATTTGGAAGAGATTTCTCAGGTGGTGGAGAGTATGATCAGCATGGTTTCCAAAAGATGCTTGAGGAATACCAGGAATTGCTTGGCGGATTTTCTATTGGAGATTTCTTCCCTTCTATGGAGTTTCTGCACACCTTAACAGGAATGAAATCAAGACTTCAAGAGACATTCGGGAGATTCGATAAACTATTTGACCAGATAATAACTGAACATCAAAATCCCAAAAGATAA

Protein Analysis

129

Amino Acids

14.76

Weight (kDa)

6.19

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 12 - 126 9.7e-08 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 101
AccII CGCG 1 cut(s) 156
AciI CCGC 2 cut(s) 154, 246
AfiI CCNNNNNNNGG 1 cut(s) 277
AgsI TTSAA 1 cut(s) 320
AjnI CCWGG 2 cut(s) 97, 231
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw26I GTCTC 1 cut(s) 317
BanI GGYRCC 1 cut(s) 101
BciT130I CCWGG 2 cut(s) 99, 233
BclI TGATCA 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 317
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
Bme1390I CCNGG 2 cut(s) 99, 233
BmiI GGNNCC 1 cut(s) 103
BmrFI CCNGG 2 cut(s) 99, 233
BmsI GCATC 1 cut(s) 207
BpuEI CTTGAG 2 cut(s) 26, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 277
BseBI CCWGG 2 cut(s) 99, 233
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMII CTCAG 2 cut(s) 104, 192
BsgI GTGCAG 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 156
BshNI GGYRCC 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 317
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 2 cut(s) 154, 246
BspCNI CTCAG 2 cut(s) 105, 191
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 103
BspT107I GGYRCC 1 cut(s) 101
BssMI GATC 1 cut(s) 196
Bst2UI CCWGG 2 cut(s) 99, 233
Bst6I CTCTTC 1 cut(s) 163
BstDEI CTNAG 3 cut(s) 14, 113, 178
BstFNI CGCG 1 cut(s) 156
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 2 cut(s) 99, 233
BstSCI CCNGG 2 cut(s) 97, 231
BstUI CGCG 1 cut(s) 156
CviAII CATG 2 cut(s) 44, 203
CviJI RGCY 2 cut(s) 10, 74
CviKI_1 RGCY 2 cut(s) 10, 74
DdeI CTNAG 3 cut(s) 14, 113, 178
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 163
EciI GGCGGA 1 cut(s) 261
EcoRII CCWGG 2 cut(s) 97, 231
FaeI CATG 2 cut(s) 47, 206
FaiI YATR 6 cut(s) 45, 133, 135, 195, 204, 278
FatI CATG 2 cut(s) 43, 202
FbaI TGATCA 1 cut(s) 196
Fnu4HI GCNGC 1 cut(s) 154
Fsp4HI GCNGC 1 cut(s) 154
GluI GCNGC 1 cut(s) 154
Hin1II CATG 2 cut(s) 47, 206
HinfI GANTC 2 cut(s) 89, 336
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 3 cut(s) 312, 320, 331
HpyAV CCTTC 1 cut(s) 282
HpyCH4V TGCA 4 cut(s) 31, 86, 137, 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 3 cut(s) 14, 113, 178
Hsp92II CATG 2 cut(s) 47, 206
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 1 cut(s) 196
LpnPI CCDG 8 cut(s) 56, 84, 111, 165, 218, 245, 285, 368
LweI GCATC 1 cut(s) 207
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 3 cut(s) 68, 180, 259
MluCI AATT 1 cut(s) 236
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 1 cut(s) 217
MseI TTAA 1 cut(s) 296
MspR9I CCNGG 2 cut(s) 99, 233
MvaI CCWGG 2 cut(s) 99, 233
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 1 cut(s) 196
NlaIII CATG 2 cut(s) 47, 206
NlaIV GGNNCC 1 cut(s) 103
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PfeI GAWTC 1 cut(s) 336
PkrI GCNGC 1 cut(s) 155
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Psp6I CCWGG 2 cut(s) 97, 231
PspGI CCWGG 2 cut(s) 97, 231
PspN4I GGNNCC 1 cut(s) 103
SaqAI TTAA 1 cut(s) 296
SatI GCNGC 1 cut(s) 154
Sau3AI GATC 1 cut(s) 196
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 2 cut(s) 99, 233
SetI ASST 3 cut(s) 12, 184, 296
SfaNI GCATC 1 cut(s) 207
SmlI CTYRAG 2 cut(s) 5, 221
SmoI CTYRAG 2 cut(s) 5, 221
Sse9I AATT 1 cut(s) 236
SsiI CCGC 2 cut(s) 154, 246
StyD4I CCNGG 2 cut(s) 97, 231
TaqI TCGA 1 cut(s) 339
TasI AATT 1 cut(s) 236
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 1 cut(s) 336
Tru1I TTAA 1 cut(s) 296
Tru9I TTAA 1 cut(s) 296
TspDTI ATGAA 1 cut(s) 320
XcmI CCANNNNNNNNNTGG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.