Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8395345.1

Orthogroup ID

OG0013668

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1242

Gene Structure 1241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8395345.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1112 bp

gttcaagaaaaagaaaacttaaactcccaccaagccctccaaagctacctgttgttggcaaccttcaccagctaggaaacaagcctcacctatctctccggtccttggcacaaaagtatggtccaataatttacttacaacttggtgagatcccaactgtggtggtttcatcagctagacttgccaaggaagtactgaaaacccatgatcttgcactatcaagccgtccacaaatcttttcagccaaacacctcttctataattgcactgatgttgtcttctccccttatggtgcttattggagacacatacgtaagatttgcatacttgagctgttaagtgccaaaagagtgcagtcatttagccatgccagagaggaagaagttgctcgtctggctcgtcgggttgcagagtcctatcccggcaccactaatctcagcaagttgcttggactctatgcaaatgatattctctgccgcgtagcatttggaagagatttctcaggtggtggagagtatgatcagcatgatttccaaaagatgcttgaggaatatcaggaattgctaggtggattttctattggagatttcttcccttccatggagttcctccacaccttaacaggaatgaaatcaagacttcaagacacattcagtcgatttgataaactcttcgaccagattttgactgaacatctcaatcccaaaagagaaaaagaggagcataaggacctcgtggatgttttactggagatacagaaggaagagactgccgatatgcctctaaccatggataatgtcaaggctattattttggacatgtttgctgctggaacagacacaaccttcatcacccttgattgggggatgacagaacttctgatgaaccccaaagttctcaaaaaagcacaagctgaagtaagaggtgttgttagggaaaaaagagttgtgttagagggtgatcttcatcagctggactatttgaaagctgtcataaaagagatatttcggctgcatccacctgcaccagtattagtacctagagaatccatggaagatgtaaccattgatggatacgacattctagccaaaacaagaatttttgtcaatgcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

370

Amino Acids

42.15

Weight (kDa)

8.25

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013668)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06600
malus_domestica	MD14G1168600.v1.1
rosa_chinensis	RchiOBHm_Chr7g0192161
rosa_laevigata	RLG00000004391 RLG00000004392
rosa_multiflora	Rmu_co8367077.1_g000001 Rmu_co8395345.1_g000001 Rmu_sc0002164.1_g000020
rosa_roxburghii	Rroxscaffold_3G00263240 Rroxscaffold_3G00263250
rosa_rugosa	Rorug06G0513300
rosa_samantha	Rh7AG123600 Rh7AG123700 Rh7BG125300 Rh7BG125500 Rh7DG127200 Rh7DG127300
rosa_wichuraiana	Rw7G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1029
Acc36I	ACCTGC	1 cut(s)	1029
AccB1I	GGYRCC	1 cut(s)	424
AccII	CGCG	1 cut(s)	479
AciI	CCGC	1 cut(s)	477
AclWI	GGATC	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	1097
AcuI	CTGAAG	1 cut(s)	935
AfaI	GTAC	2 cut(s)	194, 1037
AfiI	CCNNNNNNNGG	6 cut(s)	55, 105, 159, 600, 860, 861
AflIII	ACRYGT	1 cut(s)	818
AgsI	TTSAA	3 cut(s)	5, 643, 984
AjuI	GAANNNNNNNTTGG	2 cut(s)	238, 270
AluBI	AGCT	7 cut(s)	45, 72, 175, 333, 913, 972, 988
AluI	AGCT	7 cut(s)	45, 72, 175, 333, 913, 972, 988
Alw26I	GTCTC	2 cut(s)	297, 760
AlwI	GGATC	1 cut(s)	144
ApeKI	GCWGC	2 cut(s)	826, 1011
ApoI	RAATTY	1 cut(s)	1097
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
AspS9I	GGNCC	3 cut(s)	101, 121, 729
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	5 cut(s)	58, 79, 157, 843, 970
AvaII	GGWCC	3 cut(s)	101, 121, 729
BanI	GGYRCC	1 cut(s)	424
BauI	CACGAG	1 cut(s)	733
BbsI	GAAGAC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	813, 998
BccI	CCATC	1 cut(s)	1063
BceAI	ACGGC	1 cut(s)	209
BciVI	GTATCC	1 cut(s)	1066
BclI	TGATCA	1 cut(s)	519
BcnI	CCSGG	1 cut(s)	422
BcoDI	GTCTC	2 cut(s)	297, 760
BfaI	CTAG	5 cut(s)	73, 176, 565, 1040, 1084
BfuAI	ACCTGC	1 cut(s)	1029
BfuI	GTATCC	1 cut(s)	1066
BisI	GCNGC	3 cut(s)	477, 827, 1012
BlsI	GCNGC	3 cut(s)	478, 828, 1013
BmcAI	AGTACT	1 cut(s)	194
Bme1390I	CCNGG	1 cut(s)	422
Bme18I	GGWCC	3 cut(s)	101, 121, 729
BmgT120I	GGNCC	3 cut(s)	101, 121, 729
BmiI	GGNNCC	1 cut(s)	426
BmrFI	CCNGG	1 cut(s)	422
BmsI	GCATC	2 cut(s)	530, 1023
BpiI	GAAGAC	1 cut(s)	270
BpmI	CTGGAG	1 cut(s)	769
BpuEI	CTTGAG	2 cut(s)	349, 565
BpuMI	CCSGG	1 cut(s)	422
BsaAI	YACGTR	1 cut(s)	313
BsaBI	GATNNNNATC	1 cut(s)	965
BsaJI	CCNNGG	5 cut(s)	104, 185, 599, 788, 1049
BsaWI	WCCGGW	1 cut(s)	98
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	6 cut(s)	55, 105, 159, 600, 860, 861
Bse1I	ACTGG	2 cut(s)	752, 1027
Bse8I	GATNNNNATC	1 cut(s)	965
BseDI	CCNNGG	5 cut(s)	104, 185, 599, 788, 1049
BseGI	GGATG	3 cut(s)	744, 872, 1014
BseJI	GATNNNNATC	1 cut(s)	965
BseLI	CCNNNNNNNGG	6 cut(s)	55, 105, 159, 600, 860, 861
BseMII	CTCAG	2 cut(s)	450, 515
BseNI	ACTGG	2 cut(s)	752, 1027
BseRI	GAGGAG	1 cut(s)	733
BseXI	GCAGC	2 cut(s)	813, 998
BsgI	GTGCAG	2 cut(s)	373, 1007
Bsh1236I	CGCG	1 cut(s)	479
BshNI	GGYRCC	1 cut(s)	424
BsiSI	CCGG	2 cut(s)	99, 422
BslI	CCNNNNNNNGG	6 cut(s)	55, 105, 159, 600, 860, 861
BsmAI	GTCTC	2 cut(s)	297, 760
Bsp143I	GATC	4 cut(s)	149, 207, 519, 960
Bsp19I	CCATGG	3 cut(s)	599, 788, 1049
BspACI	CCGC	1 cut(s)	477
BspCNI	CTCAG	2 cut(s)	449, 514
BspFNI	CGCG	1 cut(s)	479
BspLI	GGNNCC	1 cut(s)	426
BspMI	ACCTGC	1 cut(s)	1029
BspPI	GGATC	1 cut(s)	144
BspT107I	GGYRCC	1 cut(s)	424
BsrI	ACTGG	2 cut(s)	752, 1027
BssECI	CCNNGG	5 cut(s)	104, 185, 599, 788, 1049
BssMI	GATC	4 cut(s)	149, 207, 519, 960
BssSI	CACGAG	1 cut(s)	733
BssT1I	CCWWGG	5 cut(s)	104, 185, 599, 788, 1049
Bst2BI	CACGAG	1 cut(s)	733
Bst4CI	ACNGT	1 cut(s)	159
Bst6I	CTCTTC	4 cut(s)	259, 486, 676, 758
BstBAI	YACGTR	1 cut(s)	313
BstDEI	CTNAG	2 cut(s)	436, 501
BstDSI	CCRYGG	3 cut(s)	599, 788, 1049
BstF5I	GGATG	3 cut(s)	744, 872, 1014
BstFNI	CGCG	1 cut(s)	479
BstKTI	GATC	4 cut(s)	152, 210, 522, 963
BstMAI	GTCTC	2 cut(s)	297, 760
BstMBI	GATC	4 cut(s)	149, 207, 519, 960
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 394
BstNSI	RCATGY	1 cut(s)	822
BstSCI	CCNGG	1 cut(s)	420
BstSNI	TACGTA	1 cut(s)	313
BstUI	CGCG	1 cut(s)	479
BstV1I	GCAGC	2 cut(s)	813, 998
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
BsuI	GTATCC	1 cut(s)	1066
BtgI	CCRYGG	3 cut(s)	599, 788, 1049
BtsCI	GGATG	3 cut(s)	744, 872, 1014
BtsIMutI	CAGTG	1 cut(s)	266
BveI	ACCTGC	1 cut(s)	1029
Cfr13I	GGNCC	3 cut(s)	101, 121, 729
Csp6I	GTAC	2 cut(s)	193, 1036
CspCI	CAANNNNNGTGG	2 cut(s)	143, 178
CviAII	CATG	7 cut(s)	205, 367, 526, 600, 789, 819, 1050
CviQI	GTAC	2 cut(s)	193, 1036
DdeI	CTNAG	2 cut(s)	436, 501
DpnI	GATC	4 cut(s)	151, 209, 521, 962
DpnII	GATC	4 cut(s)	149, 207, 519, 960
Eam1104I	CTCTTC	4 cut(s)	259, 486, 676, 758
EarI	CTCTTC	4 cut(s)	259, 486, 676, 758
Eco105I	TACGTA	1 cut(s)	313
Eco130I	CCWWGG	5 cut(s)	104, 185, 599, 788, 1049
Eco47I	GGWCC	3 cut(s)	101, 121, 729
Eco57I	CTGAAG	1 cut(s)	935
EcoO109I	RGGNCCY	1 cut(s)	729
EcoT14I	CCWWGG	5 cut(s)	104, 185, 599, 788, 1049
ErhI	CCWWGG	5 cut(s)	104, 185, 599, 788, 1049
FaeI	CATG	7 cut(s)	208, 370, 529, 603, 792, 822, 1053
FatI	CATG	7 cut(s)	204, 366, 525, 599, 788, 818, 1049
FbaI	TGATCA	1 cut(s)	519
Fnu4HI	GCNGC	3 cut(s)	477, 827, 1012
FokI	GGATG	3 cut(s)	751, 879, 1001
Fsp4HI	GCNGC	3 cut(s)	477, 827, 1012
FspBI	CTAG	5 cut(s)	73, 176, 565, 1040, 1084
GluI	GCNGC	3 cut(s)	477, 827, 1012
GsuI	CTGGAG	1 cut(s)	769
HapII	CCGG	2 cut(s)	99, 422
Hin1II	CATG	7 cut(s)	208, 370, 529, 603, 792, 822, 1053
HinfI	GANTC	3 cut(s)	412, 452, 1045
HpaII	CCGG	2 cut(s)	99, 422
HphI	GGTGA	5 cut(s)	58, 79, 157, 843, 970
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	1 cut(s)	881
Hpy188III	TCNNGA	4 cut(s)	5, 556, 635, 643
Hpy8I	GTNNAC	1 cut(s)	229
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	4 cut(s)	73, 605, 753, 855
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	8 cut(s)	214, 266, 323, 354, 409, 460, 1014, 1024
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 394
HpyF3I	CTNAG	2 cut(s)	436, 501
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	7 cut(s)	208, 370, 529, 603, 792, 822, 1053
Ksp22I	TGATCA	1 cut(s)	519
Kzo9I	GATC	4 cut(s)	149, 207, 519, 960
LmnI	GCTCC	1 cut(s)	720
Lsp1109I	GCAGC	2 cut(s)	813, 998
LweI	GCATC	2 cut(s)	530, 1023
MaeI	CTAG	5 cut(s)	73, 176, 565, 1040, 1084
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	1059
MalI	GATC	4 cut(s)	151, 209, 521, 962
MboI	GATC	4 cut(s)	149, 207, 519, 960
MboII	GAAGA	9 cut(s)	246, 270, 391, 503, 582, 663, 775, 955, 1066
MflI	RGATCY	1 cut(s)	149
MluCI	AATT	4 cut(s)	128, 261, 559, 1097
MlyI	GAGTC	2 cut(s)	421, 446
MseI	TTAA	3 cut(s)	20, 337, 619
MspA1I	CMGCKG	1 cut(s)	972
MspI	CCGG	2 cut(s)	99, 422
MspR9I	CCNGG	1 cut(s)	422
MvnI	CGCG	1 cut(s)	479
MwoI	GCNNNNNNNGC	2 cut(s)	181, 394
NciI	CCSGG	1 cut(s)	422
NcoI	CCATGG	3 cut(s)	599, 788, 1049
NdeII	GATC	4 cut(s)	149, 207, 519, 960
NlaIII	CATG	7 cut(s)	208, 370, 529, 603, 792, 822, 1053
NlaIV	GGNNCC	1 cut(s)	426
NspI	RCATGY	1 cut(s)	822
PaqCI	CACCTGC	1 cut(s)	1029
PciI	ACATGT	1 cut(s)	818
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	1045
PkrI	GCNGC	3 cut(s)	478, 828, 1013
PleI	GAGTC	2 cut(s)	420, 446
PpsI	GAGTC	2 cut(s)	420, 446
Ppu21I	YACGTR	1 cut(s)	313
PpuMI	RGGWCCY	1 cut(s)	729
PscI	ACATGT	1 cut(s)	818
Psp5II	RGGWCCY	1 cut(s)	729
PspN4I	GGNNCC	1 cut(s)	426
PspPI	GGNCC	3 cut(s)	101, 121, 729
PspPPI	RGGWCCY	1 cut(s)	729
PsuI	RGATCY	1 cut(s)	149
PvuII	CAGCTG	1 cut(s)	972
RsaI	GTAC	2 cut(s)	194, 1037
RsaNI	GTAC	2 cut(s)	193, 1036
SaqAI	TTAA	3 cut(s)	20, 337, 619
SatI	GCNGC	3 cut(s)	477, 827, 1012
Sau3AI	GATC	4 cut(s)	149, 207, 519, 960
Sau96I	GGNCC	3 cut(s)	101, 121, 729
ScaI	AGTACT	1 cut(s)	194
SchI	GAGTC	2 cut(s)	421, 446
ScrFI	CCNGG	1 cut(s)	422
SfaNI	GCATC	2 cut(s)	530, 1023
SinI	GGWCC	3 cut(s)	101, 121, 729
SmlI	CTYRAG	2 cut(s)	328, 544
SmoI	CTYRAG	2 cut(s)	328, 544
SnaBI	TACGTA	1 cut(s)	313
Sse9I	AATT	4 cut(s)	128, 261, 559, 1097
SsiI	CCGC	1 cut(s)	477
SspMI	CTAG	5 cut(s)	73, 176, 565, 1040, 1084
StyD4I	CCNGG	1 cut(s)	420
StyI	CCWWGG	5 cut(s)	104, 185, 599, 788, 1049
TaaI	ACNGT	1 cut(s)	159
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	2 cut(s)	657, 674
TasI	AATT	4 cut(s)	128, 261, 559, 1097
TatI	WGTACW	1 cut(s)	192
TauI	GCSGC	1 cut(s)	479
TfiI	GAWTC	1 cut(s)	1045
Tru1I	TTAA	3 cut(s)	20, 337, 619
Tru9I	TTAA	3 cut(s)	20, 337, 619
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	2 cut(s)	826, 1011
TspDTI	ATGAA	5 cut(s)	158, 643, 837, 898, 955
TspRI	CASTG	1 cut(s)	273
VpaK11BI	GGWCC	3 cut(s)	101, 121, 729
XapI	RAATTY	1 cut(s)	1097
XceI	RCATGY	1 cut(s)	822
XspI	CTAG	5 cut(s)	73, 176, 565, 1040, 1084
ZrmI	AGTACT	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.